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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0241700 |
| Transcript ID | LotjaGi5g1v0241700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G48000.1 myb domain protein 112; Swiss-Prot: sp|Q9LDE1|MY108_ARATH Transcription factor MYB108; TrEMBL-Plants: tr|I3RSY6|I3RSY6_LOTJA R2R3MYB transcription factor; Found in the gene: LotjaGi5g1v0241700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55002754..55004472) extracted from Lotus japonicus Gifu genome v1.2.
CCCAATAAGTGAAAACCATCAATTCCTTAACAGAGACCAAATCCCACACGCTTCTTCATTTCATAGCCGTACTGTCCTAT CCATATATAGACCATACCATTCGTTCTTCCTCTCCCAAAATTACACACGCACTTTCACACTCGTCACCACCTCAATATAC ATAGGCAAAACAGAGTAGCATGAGAAGTGTAGATCCTAAGGTTAAGAAAGGAGTGTCTGTAACAGAGCACAAAGAAAACG ATTCAACAAGCATCAGAAAAGGTCCATGGACGTTAGATGAGGACACCATTCTCATCAATTACATTACCACCCACGGTGAA GGTCACTGGAATTCGCTGGCACGTGCTGCAGGCAAGTTACTGCACTTTCATTTTGTCTTCAATTATATATAATTGAAAAA GATACAGAAACCTCTTAATATTGCAGTACGCTTCGAGACACCTCACTTTATTTGCGGAATCAAAACCGCTACAATAGTGA GGTGTCCCTGGACTGCAAGGTTAAGGGGTTTCGATTATAATTTAGAAATCTAAAACTGAAACATGAATTATATTAATACA GGTTTGAGGAGAAATGGGAAAAGTTGCAGATTGAGGTGGCTAAACTACTTGCGCCCTGATGTTCGGCGTGGAAACATCAC ACTCCAAGAGCAGATATTGATCCTTGAACTCCATTCTCAGTGGGGTAACAGGTGGTCAAAGATTGCTCAGCATCTACCAG GAAGAACAGACAACGAAATCAAGAACTATTGGAGAACGAGGGTGATAAAGCAAGCAAAGCAGCTAAAGTGCGATGTCAAC AGCAAACAATTCAGAGACACCTTGCGTCACGTGTGGATGCCACGCTTGCTGGAGCGAGTTCAGACAAACAGAACAGAGTG TGTAAAACAGAGCAACTCCCTCTCCTCCGGTTCAAGTGGAGCATACTCAGACTCATCGTCACTGGAGCTCCATGTTGGTT CAAATTCAGACCCTGAACTGTTGGGTCGTGATGTCTCGGTGGATTTAAGGCCATGTTTCAATGACCAGATGTTAGAACAG GGGAAGGGTGGTGGTGACTCGTTAGAGAATTTGTGGAATGATGAGAGTATGTGGTTTAATTTGCAGCAATTTTCTGATGG CATGGAATCAACATACAGTTAATTTCCTTGCGTGACGCACTGGATTTAATAGTAATAGGTATAGGTATATTGCATTAGGG ATGATCTTTTTCCTAAAGAATGATCATGATGATTTTTCCTACAAGCAAGTGCACGCTCTAGCAATGAATGATGTGATTAG TTTTTCTTTTTTCTTTTTTTGGTATTTTCCTGTGGGAATTACTAGTTTTAGCGATGCGAGAGTTGGGTTGCTTCTACGCT TGTTAAATAGAGTTTGTGGAGAGCAAGCAATGTGTTTCATACTTCAAACCTCAAAAGGAATGGAAGTTTAGTGCTCCATC AATCTCGCAGCTAGATTAGTTGACTATCTCATTTCCATCGTTTTTTTCTGTCCTAGTAGTATCTTAACAATTTCTAATTG TAAAGCAGCATGTGAAATCTTAAATTGTCATTCAACACATGTTACACGCGGGATATGCATTACTTATTAAGTTACACAAT CAATTGGTTATATCTTGAATAAAGATTTATTTATATCATGCTTATTAATCAAAATGTAATAAACATAAATTCATATAATT CACACCGTTTCATTCCCTTCATCTTCATCCAAACGCCAC
CDS sequence (LotjaGi5g1v0241700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTATATTAATACAGGTTTGAGGAGAAATGGGAAAAGTTGCAGATTGAGGTGGCTAAACTACTTGCGCCCTGATGT TCGGCGTGGAAACATCACACTCCAAGAGCAGATATTGATCCTTGAACTCCATTCTCAGTGGGGTAACAGGTGGTCAAAGA TTGCTCAGCATCTACCAGGAAGAACAGACAACGAAATCAAGAACTATTGGAGAACGAGGGTGATAAAGCAAGCAAAGCAG CTAAAGTGCGATGTCAACAGCAAACAATTCAGAGACACCTTGCGTCACGTGTGGATGCCACGCTTGCTGGAGCGAGTTCA GACAAACAGAACAGAGTGTGTAAAACAGAGCAACTCCCTCTCCTCCGGTTCAAGTGGAGCATACTCAGACTCATCGTCAC TGGAGCTCCATGTTGGTTCAAATTCAGACCCTGAACTGTTGGGTCGTGATGTCTCGGTGGATTTAAGGCCATGTTTCAAT GACCAGATGTTAGAACAGGGGAAGGGTGGTGGTGACTCGTTAGAGAATTTGTGGAATGATGAGAGTATGTGGTTTAATTT GCAGCAATTTTCTGATGGCATGGAATCAACATACAGTTAA
Protein sequence (LotjaGi5g1v0241700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNYINTGLRRNGKSCRLRWLNYLRPDVRRGNITLQEQILILELHSQWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQ LKCDVNSKQFRDTLRHVWMPRLLERVQTNRTECVKQSNSLSSGSSGAYSDSSSLELHVGSNSDPELLGRDVSVDLRPCFN DQMLEQGKGGGDSLENLWNDESMWFNLQQFSDGMESTYS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 23 | 23 | 4.263 | ||
| Gene3D | 3 | 29 | 27 | 9.7E-6 | – | |
| PANTHER | 6 | 123 | 118 | 2.5E-77 | – | |
| PANTHER | 6 | 123 | 118 | 2.5E-77 | – | |
| SUPERFAMILY | 9 | 74 | 66 | 1.03E-19 | ||
| ProSiteProfiles | 24 | 78 | 55 | 23.594 | ||
| SMART | 28 | 76 | 49 | 2.9E-14 | ||
| Pfam | 29 | 72 | 44 | 3.3E-14 | ||
| Gene3D | 31 | 97 | 67 | 8.5E-17 | – | |
| CDD | 33 | 72 | 40 | 2.82393E-10 | ||
| MobiDBLite | 114 | 139 | 26 | - | – | |
| MobiDBLite | 114 | 141 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0241700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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