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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0242100 |
| Transcript ID | LotjaGi5g1v0242100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT5G19730.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q8VYZ3|PME53_ARATH Probable pectinesterase 53; TrEMBL-Plants: tr|A0A151SMT2|A0A151SMT2_CAJCA Pectinesterase; Found in the gene: LotjaGi5g1v0242100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55030775..55039410) extracted from Lotus japonicus Gifu genome v1.2.
ATCGTACCCTATGAGTCTCTGATTTTGTTCTAGAAAATGCTTAGTCCCCACTACATATTAGGTCCTTTCTGATCAAAAGA GGGGCCAAGAACAAAAATAAATAAATAGGCCATTTTGTGTGTGTGTGTGTGTGTATGCACTTACTTGCATTTTAAATTAT AATCAAGTGCTAGCTTGGTCTTGAAATAGCAAGTTTAGTATCACTAGCTTTACCTTACCATGATTCTGAAAATCCATTTC CATGTCATTTTATTTCTTCTTTCATCGTTATACATCACTACTACCAGCTCAGACGATTTTGACAAGTGGATATCTTGGAA CGTCAAGAGTTATCATCAGAAAAAGACCGTTTTGGGAACCAAATGGAACTTGGCTGCACCAGATTTGAAACTGAGGCAGG CTGAGAGTGACAAAGTTAGAATTACAGTTAGCCAAGATGGTGCTGGTGATTTCAAAACCATTACAGAAGCTATTAATAGC ATTCCGCCGCGAAACACTAGGAGAGTCATAGTGATGATTGCCCCCGGTGTTTATAGGTATGTAGTACACGTTGAATTGAA ATTTGTCAATGTTGGAGATCACAATTCATAGTGTGTTACAAAGAAATTAATTAACTTGGTATGATGATTAATTAATTGAT TTTTAGGGAGAAAGTGATGATCCCAAGAACATTGCCATTCATTACATTCTTAGGGGATGCTTTGGATCCACCAACCATTA CTGGAAATGATACAGCTTCTGTCACTGGAAGCAATGGAGCTCCATTAGGGACATTCCGGAGTGCAACTGTTGCTGTGGAT GCTAGTTATTTTATTGCCATCAACATCAAATTTGAGGTACATAAATGTAAAGAACAAACAAGCAATTAAGAGAATTTTCT GAATTATAGTGGATAACAGTACCAGTATAGAGTACGTGGGTAAACTTTTCTATATTTCTGTATGAAATTTCTTACAATGG ATGTAGAGTTTCTATGGAATGGAAATAACTAAAAGATAACAACACTCAGAAGAGACACAGAGACTAGACTAGAGAAGAGA GGTGAGTCCACAATATTCCCCACCCTCTCTCATTCCCCCAACCATGCTTATATCCCTCTCAGCCACACACGTAATCCCTC AATTGAGAATTGGTTATTTTCTCTCTAGTGCTTCTTCTCAATTTCTGTTTCTCATTGTCATGTGCCACGTGACCCACCTC TTTGTCTATTATGCCCTTTTCATTAATTCCTTCTTCATTTGTTTCCCCTGACTTCATAACATTTCCTTCCCCATTAAAAA CAACCTTGTCCTCAAGGTTGAAGTCTGGATAAGATTGGTTGAATTCCTTAGCATCTTCCCATGTTGCTTGTGTAGAGTCT AGTCCTTCCCATTGGATCAAGACTTGAAAAATTTGTTGAGAGCCTCTGATGATGGTTCTAGTGTCTAATACTAACTGAGG GTATAAAACAGGGCCTACTTCATTTGTTTTAAATGGTAGAGGAACATAAGATATGTGGTGTCCTCCTCTGCATTGTTTCA GCTGTGAAATATGAAATACTGGGTGTATTTTTGCTGAAGGAGGAAGCAGTAACTTGTAGGCAACCTGTCCAATTTTCTGC ACAATTGGAAATGGTCCAAAATACTTGAGACCCAATTTCTGATTCTTCCTCAATGCCACTGAATGCTGTCTATAAGGTTG TAATTTGACCAACACCAAGTCACCTAATTGAAACTCTTTATGCACCCTTTTCTGATCAGCATATTTCTTCATAGTTGCCT GGGCCTTTAACAAGTTTCCCTTTAATTGAGACAAAATGATATCTCTTTGCAGAAGCAATTCCTGTAAGGATGGAAGGTCT TTGGCATCTTGAACATATTTAGAAATAGTGGGAGGGTCCCTTCCATAAACTACCTTGAAGGGAGTCATATTCATACTACA ATGGAATGAAGTATTATACCAATATTCAGCCCATGGGAGTGCCTCAGTCCAGCTCTTGGGTTTCTCAAAAGTGAAACACC TCAAATACATTTCAATACATTTGTTTACAACTTCAGATTGGCCATCAGATTGAGGATGGTAGGCTGTACTCATAGCTAAG GTAGTGCCACTCAACCTGAATAAGTGTTGCCAAAATTGACTTGTGAAAACTTTATCCCTGTCAGAGACAATTGTCTTTGG AAAACCATGTAATTTCACAATGTTTTTGAGAAATAACTCAGCCACTTGTTTGCTAGAATAATCAGTCTTCAATGTAGCAA AATGACCATACTTTGATAACCTATCAATGACCACCATAATAACTGTGAAGCCATTAGAAGGAGGCAAACCTGTAATAAAA TCCATGGCTAAATCGTCCCAAATCTGCATTGGGATTGGCAAAGGTTGTAATAAGCCTGCTGGGAGTGTAGTAGCAGACTT GGCCTGTTGGCAAATGAGGCACTCTTGCACATATGTTTTAACATCTTTGTGCATTCCTTGCCAAAAAAACTGAGACGCAA TTCTAGCTAGTGTCCTTGTGATGCCGGAGTGACCACCCAAGGGAGAACTATGGTATTCATGCAATATTTGTTGGATCATA GAATGGTCCCGTGGAATCACTAATCTTCCTTTCCAATATAATAGCCCATCATGTGCTGAATAATGAAGATCGGGCGGTTT ACCTTGAATGCACAACTTATACACCTCAGTGAGTTTTGAATCAGCAGCAATGGCTTCTTTTAGACAGTGGAGAATTTCTA GCTTTGGTTGTGACCATGCCATGAAACAAGACCGGGAAAGAGCATCAGCTGCAAGGTTTTCTCTACCAGGTTTGTACTCA ATGGTAAAGTCATAACCCAAAAATTTATGTAACCACGCTTGCTGTTCTGGTGTTTGCAACGGTTGCTCAAAAAGACTGCT GAGACTCTTTTGATCGGTACGAATGATGAACTTATGGCCCAGCAAATAGTGACGAAATTTAGCAATTGCTTCTGTAATAG CATAGAATTCTCTTGCATAAGCAGATTGTTTTTGCATCCTTGGTGTTAATTTCTTAGAGAAGAAAGCTATAGGGTGTTTT CCTTGATTTAGTACAGCTCCAATACCCGTCCCGGAGGCATCAGTCTCCAATATAAAAGGCTGAGAAAAATTTGGTAGAGC TAGTACAGGGGCACTAGTGATAGCAAACTGTAATGACTTAAAAGCAGCAGTTGCTTGATCATCCCAAGAGAAACTAGCCT TCTTCAACAAGTTTGTCAAAGGAGTTGCAATCGTTGCATACCCTTTTATAAATCGTCTATAGTAACCTGTAAGCCCAAGA AATCCTCTCAGCTGTTTGACAGAATTGGGAATGGGCCAAGTTAATATTGCTTCAACCTTAGTCTTATCCATTGCTACTCC TTGTCCCGAAACCGTATGACCCAAGTAATCAACCTCAGTGAGTCCAAAAGAACATTTGGACAGTTTAGCATATAAGGAAT GCTGCTGCAGAATTTGTAAAACCATCTCTAAATGATGTAAATGCAAAGACCATGATGAACTATATACCAGAATATCATCA AAGAAAACTAAAACTGATTTCCTTAATAATTCTTTAAACACATCATTCATCAAGCTTTGGAAGGTGGCAGGGGCATTGGT TAGCCCAAATGGCATCACAAGCCATTCATAGTGTCCTTGATGTGTCCGAAATGCTGTTTTATACCTATCATTGTTGTTCA CCAGTATTTGATGGTACCCAGATCTAAGATCAAGTTTAGAAAAATATTGTGCTCCAAATAACTCATCCAATAATTCTTCC ACAGTAGGAATAGGAAAACTGTCCTTCACCGTGATTGCATTTAGAGCCCTGTAGTCTGTACAAAACCGCCAAGTTCCGTC TTTCTTTTTGACTAATACAATAGGAGAAGAGAAAGGACTTCTACTTGGAACTATGATGCCTTCCTCTAACATTTGCTGCA CCATTTTTTCAATTTGCTCTTTCTGACTATGTGGGTATTTATAAGGTCGCACTTTAACTGGAGTGCTGTCGGGAAGCAAG GGAATGCAATGATCCTGTGATCTCGGTGGTGGTAAGCCAACAGGTTGAGAAAATATGATCCTGTAATTATGCAACAGTAG AGCTAATTCAGGTTCCATATCATCAGGAAGGTCCAACCACTGATCATGTGAGGTGTCAACAAGCTGAAACTGCAATGTGA ATAACTCTGCAATAGCATGTGTGTTACTCATCCTCCGGAGATGATGACATTGAGCTGCAGATGGTAACTGAGGTTGGTCT CCATGAAGTGTTACAAACTGACCATTCAGATAAAACTTTATGGTGAGAGCACTGTAATCTGCAATGTGAGGGCCCAATGT GGCAAGCCAAGTAGCTCCCAAAACTAAATCAGCACCTGAAACTGGCAGAAGATAAACAGGTAATTTAAGAGTGTGACCCT GAACCTGGACTTGGACTTCCTTAATCAGTCCTTCAGCAGCTAAAGAGTGACCATTGCCCACCATTACTGGGAATTCCGCA ACAGGTTCTACAGGTAACTTGAGACAATGAGCCAATCTTGGTTGCAAAAAATTATCAGAACTGCCACTGTCTAGGAGAAT CTGCACCTGAAGACCATTAATCAATCCTTGAAACTTCATAGTTCCTAAACCCGTAGAACCTTTTAAAGCATTATAAGATA AATGATGCTCAAGTATTTCTTGCCCACCATCTTGAACAGAATTGTCAGGAGGTTCAGGTTCAGCAGTGATGTTATCATCA TCCACCAATTGCAAAAACAAGTACTGCTTATTTGGGCACTTGTGATTGAAGGAAAATTTGTCATCACATGTGTAACAGAG GCCTTTTTCTCTGCGCAATTGCATCTCAGCAGGAGACATGGTTTTGACATTAGAATTTCGTTGAGGTTGTGTGGTAGGTT TAAGGTTTGGTGTTGGTAAGATTGGAGCCATGGTGGGAGTTCTGTATGATTGGTTTTGAGTTCTGGGAAATGAACTTGGA TAAGTTGGTTTTGGTTTGATATATTTTTCTTCATAGAGTTTGGCTAGAGACACAGCTTTGAGTAAGGAAGTGGGGCATTG AGCAATCACTTCCCGTTTGATATCATCTTTCAACCCACTCACAAAACAATCAACCAATGCTTCAGAACTAACTCCATAAA CTCGATTAGCAAGAGCGGTGAACTCAACATAATAGTCATTCACAGACCCAGATTGCGACAACTTGAACATAGTAGCTCGT GGACAATCATAAGGGGATGGACCGAATTCCAGCTCCAATGATTTGGTGAAACCCTTCCAGGACTGAAATGGATTGTTTCG ATTCATCATTTGGAACCATGGCACAGCATCTTTCTCCATATGGACCGCAGCAATCGTTAAACGTTGCTCATCAGGGGTTT TGTAATAATCAAAAAATTGTTCAGCCCTAAAAATCCATTGCAACACATCCTTACCATCAAAACGTGGGAAATCAAGCTTA ATGTTCCTTACCTGAAATGGCTGCACAGGTCGACTTGAGTTCGAGCCGCCATCGGCGAGAATCTGACCGAGATTGCCCAT TGCAGCATCAATCTGATCAAATCGCTCAGAATATTGCAGATCTCGTTTCTCCATCAATTCCATAAGCCGTTTCACATCAG CAGACAATTCCTTCAACCTTGTGTTCTCAGCCATGGAGGTCAATGAAAGCACCAAATGTAAAGAACAAACAAGCAATTAA GAGAATTTTCTGAATTATAGTGGATAACAGTACCAGTATAGAGTACGTGGGTAAACTTTTCTGTATTTCTGTATGAAATT TCTTACAATGGATGTAGAGTTTCTATGGAATGGAAATAACTAAAAGATAACAACACTCAGAAGAGACACAGAGACTAGAC TAGAGAAGAGAGGTGAGTCCACAATATTCCCCACCCTCTCTCATTCCCCCAACCATGCTTATATCCCTCTCAGCCACACA CGTAATCCCTCAATTGAGAATTGGTTATTTTCTCTCTAGTGCTTCTTCTCAATTTCTGTTTCTCATTGTCATGTGCCACG TGACCCACCTCTTTGTCTATTATGCCCTTTTCATTAATTCCTTCTTCATTTGTTTCCCCTGACTTCATAACAATAAACTT CCTTATTAATAAATACAAGTTACTTTTATCCAAGTTTATTTTCTTGAACAAGGAAATAGACCTTCATAACATAATGAAAA ATGCTAATAACACCTCTAATTGCATGCTAAAACAGAACACTGCTGGGCATGTCATTGGATCAGTGGGGGGACAAGCAGTG GCGCTTCGCATCTCAGGAACCAAAGCTGCATTTTACAATTGCAGCTTCTATGGGGCTCAAGACACACTTTATGATCACAA AGGTCTTCACTACTTCAACAATTGCTCTATTCAAGGCTCTGTTGATTTCATCTTCGGCTCTGGGAAGTCCCTTTATGAGG TCTTTTTGTCTTTTGATTTGCTTCTCTTTTTATCTTTATGAAGGTTCTTTTGTTTCAAACTTTTGTTATTTTTTGGGTGT GGACCTGCCTTTGCTAATTAACTAATTGAGACATGGGTTTGATCAAGGTCCAAAAGACACTAACTTCCAGCTCAAGTTAA CTTTATATAGATGGCCTTTGACAATATAAAAAAACTATAATAGATGGGTTTTCCTGGCCTAGTTGGGCTTAATATTATAA ACTTGAATAAGGATGCTTATATCAGCTTATTTTTCTCAGAACCAATTCTTGCACTCACAAGAAGCTTCTTACCAGAATTG ATGATAGCTTTTTTTTAAGGATTTCCAAACATGCATTATGATAACTTGTCATGGGCTTGCTGGCCCCAAAAAATAAAGTA AAATTGAAGGCTAAAGTGCTTGATTCAATTGACATACAGAACTGCTATCTGAGTTCCATAACCAAGAAAGTGGCTTCCAT CACTGCACAAAAGCGTACAAATTCATCATTGGAAAGCGGCTTTTCGTTCAAAAACAGTGTTATAACAGGCAGTGGACAGG TGTATCTTGGAAGAGCATGGGGAGATTATTCAAGAGTTGTTTTTTCTTACACCTACATGGACAAGATAGTCCACCCAAGA GGATGGAGTGATTGGGGTGACCAAAAGAGGGACCAGTAAGTACAATGCAGAAGCATAGTCTCCATAATCCTTGTCTTTAC ACAAATTACACAATGAATTTGTTTTATTGTTTGTGTGTGTTGCAGGAGGGTATATTATGGAGAGTACAAGTGCAGTGGGC CGGGAGCTAACTTGAGCGGAAGAGTGCCATGGGCTAGAGTGCTTACAGATGAAGAGGCCAAACCTTTTATTGGGATGAAC TTCATTGAAGGAGACACTTGGCTCATTAACCCCTAAGCCATGATCTCAACTTCTGAATTTCCACAACTTATCAATGTTCA TCAATGCTAGATTTATATCTACAAATAATTTGCTTCAATTAAGTTTTAACTACTTGAAAATAATAAGAGCTCTACTATTG TGTTTAGGTTGGTTGGGGACACACATAATCTAAAGTACGGTAATTTAAAAGTCACTGTTATTTTTAATTGTGTTGAAGTG ATGTTTCTTCTGCGTTCACTGCCTTAGAAAGTGGGATTCAAAATTCCTAGGTATCAAATGGGGTCCCCAACAAAAAAAAA TAGCACTACATTGTTAGTGTGTTTGGTTATGTAGTAGGAAACTCCATAATCACTTCTAGTGAGAAGTTATAAAATGTAAC TTATGACTAACTACTTTGGATTGTGTGTTCATCTCTCGGTACATATTTAGAAACTTATTTGAAAATTATGGTGAACAAAA GTAAAAGCTAAGAGAAGTTGTCTATGTCCATCATCATGATTTTGAATCCTCCGTGGTTTTTCCAAAAAGTTTCTAACGTG TGCACTCATCCAAACACACTATTCATAGCTTTTCTCTAAAATTGATTATGAGGCTCTTAATTAATTGCATAACTAATTAA ATATGTTATTCATATATTTGTCTCACCATCAACAGATACATAATGCACTGCTAACTGTCTTCATCTTCATAATTTCCCTT TGGACTTTCAAATTAAGCGACAGTATATGTCTTCTTGAATGGAAGAAAGAATAAAAGACAATATTATTTGATGCGGTTAT GAACTTATGATGGAGGAAAGGACCAATAAAACACCACGCTGGACAAGCTTGATGCTTCCTACAAAAGCATCAAATTCTGT CTTCATTGTTGGGATATGAATTGAAAATACAATGTAGGGTAAGATGGAGAGGAACATCAGAATGTCATAATGTTTGATTA ATTTTAAGGCCAAATGGAACACTCTGCTAATTTCCAGGGTTTGGTCTCTTCTTTGTAATCATTCAGAAAACCACAAAAGT GATCTAAGTTGTCCATGCTGGTGGATGCTTTCCCCTGCTTGTTCACCTCAGTAATAGATGTCAAATCTATTGTCTCTTTC CCCTTACACCTCGGACACTGTAGTAGAAGTTCATGATGACAGCATCTTATTAAAGCTTCAAGCAATAGCAAAATTGAAGC CATTGTAGAGATGGTACATTTGTTGTCAAGGTGTAGACAGACATAGATTAGATGGAAGAATGAGACATCATATATATATG CAGGGTTTTGCTCTGCTCTTCACCCTTATACATGTTTTCAATATTTAAATTTGAAGGGGGACTTGTTAGTTGTTAG
CDS sequence (LotjaGi5g1v0242100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCTGAAAATCCATTTCCATGTCATTTTATTTCTTCTTTCATCGTTATACATCACTACTACCAGCTCAGACGATTT TGACAAGTGGATATCTTGGAACGTCAAGAGTTATCATCAGAAAAAGACCGTTTTGGGAACCAAATGGAACTTGGCTGCAC CAGATTTGAAACTGAGGCAGGCTGAGAGTGACAAAGTTAGAATTACAGTTAGCCAAGATGGTGCTGGTGATTTCAAAACC ATTACAGAAGCTATTAATAGCATTCCGCCGCGAAACACTAGGAGAGTCATAGTGATGATTGCCCCCGGTGTTTATAGGGA GAAAGTGATGATCCCAAGAACATTGCCATTCATTACATTCTTAGGGGATGCTTTGGATCCACCAACCATTACTGGAAATG ATACAGCTTCTGTCACTGGAAGCAATGGAGCTCCATTAGGGACATTCCGGAGTGCAACTGTTGCTGTGGATGCTAGTTAT TTTATTGCCATCAACATCAAATTTGAGAACACTGCTGGGCATGTCATTGGATCAGTGGGGGGACAAGCAGTGGCGCTTCG CATCTCAGGAACCAAAGCTGCATTTTACAATTGCAGCTTCTATGGGGCTCAAGACACACTTTATGATCACAAAGGTCTTC ACTACTTCAACAATTGCTCTATTCAAGGCTCTGTTGATTTCATCTTCGGCTCTGGGAAGTCCCTTTATGAGAACTGCTAT CTGAGTTCCATAACCAAGAAAGTGGCTTCCATCACTGCACAAAAGCGTACAAATTCATCATTGGAAAGCGGCTTTTCGTT CAAAAACAGTGTTATAACAGGCAGTGGACAGGTGTATCTTGGAAGAGCATGGGGAGATTATTCAAGAGTTGTTTTTTCTT ACACCTACATGGACAAGATAGTCCACCCAAGAGGATGGAGTGATTGGGGTGACCAAAAGAGGGACCAGAGGGTATATTAT GGAGAGTACAAGTGCAGTGGGCCGGGAGCTAACTTGAGCGGAAGAGTGCCATGGGCTAGAGTGCTTACAGATGAAGAGGC CAAACCTTTTATTGGGATGAACTTCATTGAAGGAGACACTTGGCTCATTAACCCCTAA
Protein sequence (LotjaGi5g1v0242100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MILKIHFHVILFLLSSLYITTTSSDDFDKWISWNVKSYHQKKTVLGTKWNLAAPDLKLRQAESDKVRITVSQDGAGDFKT ITEAINSIPPRNTRRVIVMIAPGVYREKVMIPRTLPFITFLGDALDPPTITGNDTASVTGSNGAPLGTFRSATVAVDASY FIAINIKFENTAGHVIGSVGGQAVALRISGTKAAFYNCSFYGAQDTLYDHKGLHYFNNCSIQGSVDFIFGSGKSLYENCY LSSITKKVASITAQKRTNSSLESGFSFKNSVITGSGQVYLGRAWGDYSRVVFSYTYMDKIVHPRGWSDWGDQKRDQRVYY GEYKCSGPGANLSGRVPWARVLTDEEAKPFIGMNFIEGDTWLINP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| PANTHER | 9 | 365 | 357 | 1.9E-179 | – | |
| PANTHER | 9 | 365 | 357 | 1.9E-179 | – | |
| Phobius | 9 | 19 | 11 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 365 | 341 | - | – | |
| Gene3D | 65 | 364 | 300 | 1.1E-108 | ||
| SUPERFAMILY | 67 | 362 | 296 | 1.44E-89 | ||
| Pfam | 68 | 359 | 292 | 2.7E-77 | ||
| ProSitePatterns | 221 | 230 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi5g1v0242100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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