Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0246300 |
| Transcript ID | LotjaGi5g1v0246300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 205; TAIR: AT3G62580.1 Late embryogenesis abundant protein (LEA) family protein; Swiss-Prot: sp|Q6GPW4|TM205_XENLA Transmembrane protein 205; TrEMBL-Plants: tr|I3SAD0|I3SAD0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0246300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55492550..55496654) extracted from Lotus japonicus Gifu genome v1.2.
GCCCACCATAAATTCCAATGAGCGCTGGTAGGTGGTTTGGTTTGGTAGATAGTAGAGATAACTAAGCATCTTGCTTTGCT TGCTTCAATCTTCATCGTCCCTTGCAGAATCGAAACACCACTCACTCTTTCACTCACTGCAATCATGGGTTGGCTGAGTC GGTTTCTAACGGCGGTGACTTTCTTAGCCGTCGGAGTATTATTCTCGCCGGAGACACTCGCTTCAAAATCAACAGCTCTT TCAACCTACCTCAAACTCGCTCACCTCCTCAGCTTCTCCACCGCCTTCGGTTCTGCTCTCTGGGTCACCTTCATCGGTGG AATCATCATGTTCAAGTAAGTAACCTTTCCTTTTCATTTTCATTTTCACAGTAATTTGATGCGTGATTGTGGCTGATTTG GTTGAATTGTTGACTGTGTTTAGGAATCTGCCGAGGCATCAGTTTGGTAATCTTCAGAGCAAGATGTTTCCGGCGTATTT CTCACTGGTGGGAACGTGTGGCGCCATTGCGGTGGCTTCCTTTGGGTACCTGCACCCGTGGAAAACTGCTTCCACTAGTG AACGATACCAGCTTGGGTTCTTGCTCTCTTCCTTTGCATTCAATCTCACCAACTTGTTTGTGTTTACGCCTATGACCATT GAGGTAATTTTCTTTCTTTTTTAGGTTGTTCTTGTCTCTGTAGCGGTCTCCTGTTAATTAGTTTACACTTGTCAAAGTAG TCCCTTGAGCTTGTATGTGTGTTCAAAATAATATGATCCTTCTAGTTTATATATTATATTCTCACTTAGGTATGCTTGAT TTCTAGTTGGGTACAATGTGGTACAATTACGATGTTACCTGTTACCATGTCCGCCATGTCAAAATTCTATTAGCATTTTC CAATTTCTTTCAAGCAAAGCAAACTAGGCCTTAAGGTGTGTGTTAAATCATTTTTTTATTTTGGAATATATGTGAACTTC CGTATTGAAAACGGATATCCAAATTCCAAACACGCCCTTAATTGTTACTTCCTACTAGTAATTAGTGAGGCGAAATTAAG TTTTCTTAGGCTTTATTTGAGAGTTTTTCAGGGAGAGGGGAGGGGAATGGAGGGAAAGCTATTCCCTTGTTTGGCAGTTC AAAATTTTCAAAAACCCCCAATTTGGGGGAACTCAATAAAAATAGCTGAAGAGGGTCTTGGAGGGTTTTTCAGAAATTCC CCAAACCTCTTCCCTGTTAGGGTGTGTTTGGATGTTTTTAGAGGAGGAAAGGGAAAGACTTTAAGGGGAAGGGGAGGGCA AGAGAGGGGGAAGCGGGGTAAGCCCTTCCCTTGTCTGGCATTTCCAAAACCCCCCCAATTTGGGGTACTAAAAATTATAA CTAAGTATTTTGGAGGGGTTTCACTTTCGTAAACACCCCAAACTCCCTCCCTCCCCCCCCAAATTTTTATAATCTCTCAA ACAAGGGGAGGGCTTCTCATAAGTCTTCCCTTCCCTCACTCTAAAACTCAAGTCACAAACAAACACACCCTTAAAAAAAC TCCCAAAACAATGGAGGGCTTCTCATAAGACTCTTCTTTACCTTTTCTTCCTTCCAAAATCCAACTCTCAAACAGAGCCT AAGGAAATGCATTTACTAAGGCTGTGTTTTGATATGCATTGGCTCCTGTGCAAAAAGTGAACGAAACTCTTCTTATGAAT CAGGAAGAAGTTCGTTGACTTTGCACTAAAATAGTATACCAACACACACTAAATGATTTATTTTGTCATGGAAATGGATT CATGAAATGTTTTATTTTTTGATGGAATTGATAGTGTGAAATGGCAGACTGATTGAGTGATAATCACTTAAGATTATCTG ATTCTAGGGAAGACTAGAGTACTGATGCCTCATTCTTTGCATGACAAAATTGTTTTCCGTACTCAAAATATCATGCGCCT GCAACAATTTAACTATTCACTAAAAGTCTAGAACCTTAATGACTAGAATCTGTTATGATCTATATCTCATTTTCGGTTAA ATTGAACTATTTGACATGTTGATCAAATTTTCCTGATGCAACATTTTGCAAAATTAAGCTAAGCATATATTTCACAAGCT TAAATGAATTCAACACCAGTCAAACTCAAATGGTCAAAGTTTGTTACTTTTGTTTAATCTTAAGTTTGTAGGTAAGTTGG TTGGTAGTTTCCAACTGTTAAATCATAAGAGTTCTTTCCAATTACATTCTATAGGGGAACAGGTCCAATTGATTGCGTCA TTTTGATTTGGTTTTTATTATATTTATTACTCCCTCCGTTCCTAAATAACTGACACTTTAAGGTTGTTGCACAAGTATTA AGAAATAGCAATTAATGTTCTTGTTTTATTAAAATTACAATCTAACTTCCTATTATACCCTTTATCTCTCATATTAATTC TAACTTTTCAACTTTTCTACCACCAATAAATGAAGGGTACAATTGGTAAAGTATAATTAATGCTCTCTTGAACTTTGTAA AATGGCAGATAATTAGGAACAAAATTTAGTTAGAAATAGTGTCAGTTATTTAGGAACGGAGGGAGTATTAACTTGTATTG TTTGATATCATCATACCAATAGCAATGTGTTGATTGTGTTTCATCTCTTTCCTCTTATTGTTATATGGAAACTTGAGAAC TTTCAACTAGCTTATATATATTTATTTAGGGTAAAACTTACCTGCAGTGCCATACATGCAGTTGGTACTGTTCTCATGTA TCCCTTTTTTTTCGACTCTTATCTTCATTCATCACACTAATGGCACTGTAGCAAGGGTCTTAATCATATCTACCTTCATG AAAACATTTTATGTTGTTACTCTGCCAATAGTTATTATACCTTTTATGGTTGATAATGAAACCATTTGGTTGCTCTGATA CAGCTGATGAAGCAAAGGCATAAAGTGGAGAGAGAAAATAATGTTGGAGAGGAAGTTGGGTGGTCAAAAAATGTGGAAGT TGCAAAGACAAACCCAAAGCTTGCAGCCATGAATAAGAAGTTCGGTATGATTCATGGATTATCTTCCCTCTCTAATATCA TGTCGTTTGGAAGCCTTGCAGTACACTCTTGGTACTTGGCAGGTAAAATTAATCTGTGAATCAATTTCTGCCACACGTTC TATTCGACATGGCTGAGCACCTTATGAAAAGTTATATTAAGTCAGGATCCCAGTGTTCTCTTTATCTGCTAGTTAATCGT TTTACTTGCCAAGAAGTCTAGAATGTCAATTTGTGAAATGTACCATGAGAGCATTTTACCGTATCGATTTACCAAGAATG CCTGGCCATGGACACATAATGTAATCGCCCTAGTTCATATGAATAAACTATGTTGTCTGTGTACCTTTCTGTAGTCAAAG GTAACAAATATTGTAGACTCCAGCTGTTATCATATGTTAGCATTTGTTTTTCTAGGTGTACTATTTCTCTGTTATTTTTT CCCATATTGAGGGGGACTACATTTTGCTAGTCTCTGAGTTCAATGTTGAGGTCTATTTTGTTGTTCTCTTAAAGCTTGAA GATTCACCCTCTATTTTCCCTGAAAATGTGCTCGAGTTATTACGGCTTGTTCAGAATATTGAAAGAAAGGTGCTGTTCAT CTCATGTACATGTGCACCTGCTTCTACAAGCACCAATACAGTATAGTAATGCTAGCTTAGCCACCATGGACTAAAAAATA AAACCTAACTAAGCTTGGGAAGCCACTTAGATAACTGACGGTGTCAAATTAGTGGCCAGCAATGCTTGGTGATGCCTTGT ATTGTAGGTCTATGATTTTGAGCATACCATGCTCTATGTTGCGCCAGAACTTGTCTGTGTTGTGCAGTTGAGATCCCTGT TCCAAAAACTAGAATGGCCAAAATAAGCCTGATATTTGATTGAAGAGAAATTTTTTCATAGGAACAAACGCTGTGTTATC TTGTAAAATATAATCTGTAAATTTCCTGATTCACTTTCTCAAATTACACGTTTTTTTAATAAAATCAAATTACACATTTT AAATCCTACATTGTTGTGTCATGAGTTTGGCACTGTTGGTTTATGATTTACTTTATTTAGAGATGATTATTTTTAAAATT TAGATATTGATAGATAAAGTAAAAG
CDS sequence (LotjaGi5g1v0246300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGGCTGAGTCGGTTTCTAACGGCGGTGACTTTCTTAGCCGTCGGAGTATTATTCTCGCCGGAGACACTCGCTTC AAAATCAACAGCTCTTTCAACCTACCTCAAACTCGCTCACCTCCTCAGCTTCTCCACCGCCTTCGGTTCTGCTCTCTGGG TCACCTTCATCGGTGGAATCATCATGTTCAAGAATCTGCCGAGGCATCAGTTTGGTAATCTTCAGAGCAAGATGTTTCCG GCGTATTTCTCACTGGTGGGAACGTGTGGCGCCATTGCGGTGGCTTCCTTTGGGTACCTGCACCCGTGGAAAACTGCTTC CACTAGTGAACGATACCAGCTTGGGTTCTTGCTCTCTTCCTTTGCATTCAATCTCACCAACTTGTTTGTGTTTACGCCTA TGACCATTGAGCTGATGAAGCAAAGGCATAAAGTGGAGAGAGAAAATAATGTTGGAGAGGAAGTTGGGTGGTCAAAAAAT GTGGAAGTTGCAAAGACAAACCCAAAGCTTGCAGCCATGAATAAGAAGTTCGGTATGATTCATGGATTATCTTCCCTCTC TAATATCATGTCGTTTGGAAGCCTTGCAGTACACTCTTGGTACTTGGCAGGTAAAATTAATCTGTGA
Protein sequence (LotjaGi5g1v0246300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGWLSRFLTAVTFLAVGVLFSPETLASKSTALSTYLKLAHLLSFSTAFGSALWVTFIGGIIMFKNLPRHQFGNLQSKMFP AYFSLVGTCGAIAVASFGYLHPWKTASTSERYQLGFLLSSFAFNLTNLFVFTPMTIELMKQRHKVERENNVGEEVGWSKN VEVAKTNPKLAAMNKKFGMIHGLSSLSNIMSFGSLAVHSWYLAGKINL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 208 | 208 | 2.8E-104 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 26 | 26 | - | – | |
| SignalP_EUK | 1 | 26 | 26 | - | – | |
| TMHMM | 4 | 21 | 18 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 26 | 8 | - | – | |
| Phobius | 27 | 41 | 15 | - | – | |
| TMHMM | 41 | 63 | 23 | - | – | |
| Phobius | 42 | 66 | 25 | - | – | |
| Pfam | 42 | 143 | 102 | 7.0E-29 | ||
| Phobius | 67 | 77 | 11 | - | – | |
| Phobius | 78 | 100 | 23 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Phobius | 101 | 111 | 11 | - | – | |
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 112 | 132 | 21 | - | – | |
| Phobius | 133 | 182 | 50 | - | – | |
| TMHMM | 180 | 202 | 23 | - | – | |
| Phobius | 183 | 203 | 21 | - | – | |
| Phobius | 204 | 208 | 5 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0246300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…