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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0246700 |
| Transcript ID | LotjaGi5g1v0246700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT2G47460.1 myb domain protein 12; Swiss-Prot: sp|O22264|MYB12_ARATH Transcription factor MYB12; TrEMBL-Plants: tr|A0A151SNJ7|A0A151SNJ7_CAJCA Transcription factor MYB12; Found in the gene: LotjaGi5g1v0246700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55521989..55525813) extracted from Lotus japonicus Gifu genome v1.2.
ACAAACATCCACCACAGATACATCTCCCTCACTGTCCCCACCGCATTTCAGTTCTATAAACCATTTCAACTGCTCTAGGC CTTTTTCCACTGCAAAAGCGCGAGTGATATGCTCCTACTATTAATACCCCTTTTGCAACTTGCAGCAAATGGCATTATTA TTAGCACAGAAATAAACAAGCCATTCTATTTCAGTGAAGCAGCTGTAATATATAGCATTGATATAGAGTGGACAAAAACA TTAAGAAAAAATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAGAGGGAGGTGGACAGCAGAGGAGGATGAAA TTTTATTGAAATACATTCAGGCAAATGGGGAAGGTTCGTGGAGGTCATTGCCCAAAAATGCAGGTACTACATGTATATAA TATTTTAGTATTGGTTCATTTTGTTTTGTTTTGAGTTTGAACTAAAAAGTTGTGTGCATCATGGAAGGATTGTTGAGGTG TGGAAAGAGTTGCAGACTAAGATGGATTAACTATTTAAGGACTGACCTCAAAAGAGGCAACATTTCTGCTCAAGAGGAAG ATACCATCGTAAAGCTGCACGCTTCTTTTGGCAACAGGTTAGTAATTAACAGAGCCATTTTAAGTATATTGCCAGTGGAA AAAAAGAGTCATGAAGTAAACATACGATTTTGGAGTGACATGAACATACGCATTAACGTTGGTTTTTAACCACTGTAAAT ATTAATGATGGTTAAAATCTGTTATTAATGTGTATGTTTATTCAATGTCGTCTAAAACCGCACTAACATTTTTTAGGAAA AAAATTTATTAATAACTTGTTTGGTTTCACGTTTTGCACGAGATACAATGTGCGTTTATTCTGAAGTTTAATACTTCTAA CTTTTACGTTAAAATTAATTTTTGAGCATTTTATCGTGTAACCAAACATGCTCATAATATTTTCACGGTAAAATAGTCTA GGTTAGAAGTTACTATAAGCTTAACTTAGTTGTAAACGTGGGGTGTCTACTATTATATATGAAACCAAACATGTCTTGTT CATGAAGCTGGTAATGCGTACGTACCTTTGTACTTTTTTTTCAGCAACTTGTTTTCAGAAGATTAATTTTTTATTTTGAT GTTAAGTACTTCAACCCAGTCCATTTATTGCTGTAAAATATATAACTAGTTACCGCGTTAAACAATAAAAGAAAAACCTC AGTTCATCTTCTTTGTCAATGTAAGCTGCTCACTGATCGATGTCTTTATCAGTTATTAATATAGATGGAGACCTCTATCT GCAACCTCTGTCTTTACATGAGAATAATGTGCTTAATTAAACAATTTTAGAATATAAAGTATAAAGTATAAACTAAAAAG CTAAAAGATAGTTTTATATATAATTTCAAATTTCTAAAATTGTATATACTCAAAAACTCTAATGTTCCTATTTTGTTCTT TCAAATCTATTTTACTACTCCTCATTCACTATTGTCAGCAGTACGTATTTGAAAAAATATCAATAAATAAATGTTTATTT AAATTTTAAGACAGCTATATAAATAGTTATATTTTTTTTCTAAGTAAATAAATTTATAAACACTCAATATTTACTTTATT TATCTCGCTATATATATATATATCTCTTTTTAATCACATCATATTTTTTTTTATGCATCAGAAAATTAACGAAAAACAAG TTTATCTTTTTTATTTTTGATAATTTGAGTTGAAGGGCTTAAAGCCAAAAAAACGAGTTTATCTTTCTCAACTAATCTAT ATACTCCTCGTACTCAAATCTTTACCTTGATAGTTTATACAGTAGGATCCCATAAATTATCATATGCTCAGCTTGATTTG ACAATTATGAACCGAATAATGTTACCTACACACCTCTAAGCACACCTCTCTTAGAGGTGTGTAGAGGTGGAAGGAAGAGA GAGATAGGAAGAAAAGAAAAAGTAAGAGAGAGAAAGTATGAGATGTGATAGATGATAAGAGGAGAGAGATAGAAATAAAA ATAGGTAGAAATAAAGTGTTTAAAAAGAGAGGTGTGTATATATCATTACTCTCATGAACCATATTAATGTTTACATGTCC CTAGTTTTTGACTTGTGTCCTTCTGGAAAGTTTGTCCTTTGTGCCATTTCCCTTAGTAATGCAGAGTGATACCGAGAGTT TTGTCGGAATTGTGTTACCATATTAAATATTGGTGAGTTGTCCCTGTCATTAGTAGCAAGTAAAATCACAATCAATCCTA ATTTGTAGAGACCTAAATTATGCTGATACGATACATGTATTTAATTTTCCCTGTAACATGTGTCCATAAAAAATCTATCA GAACATCATTTTGTAAATTGTAACCTGTTAGTCTAACTTATATCATAAAATTAGATAGGTCAATAATATTTAAGATAAAT AAGTTAAAAAAATTATGATTTTTTAATTGTGGCAGTGCTAACTTTGTCTTTTAACCATAAATTTTTGTTATGTTGTTTTT AGATGGTCATTGATAGCAAGTCACTTGCCAGGGCGAACGGACAACGAGATAAAAAATTACTGGAACTCTCATTTGAGCAG AAAAATCTACAGTTTTCATAGGGTAACTACTACTTCTACTACTACTACTATTGAGCCAAGGGTGCTGATGAGCATTCCTC CTCGCCCGCGAAGGGGTGGCAGAACTAGCCGTCGGGCCATGAAGAAGAACAAAAGCAGCTACACCCAAACTCAGATCAGG CCTAATAAACCAACTGTAATTTCGCAACCGAATAATGAAACTGCAGTTCCACTACCACCACTGCTGCCGGCCCCGTCACT AGAAAAAGCAGCAGGGGTTGCTGATGAGGCAAGAAGTGAGGATTTGGAATTGACAGAAACCACCGATGACGACGACATCT TCCTAGAACTGTTGGAGGTGGAGGGAGACATTAATGGCGGCACTGGTGGGGCGTTACGTTTGAGTGAGATGATAGAGAGT TGTTTGGTGGAAGAAGGAGAAGAAGGATGTGGGGTTCCGACATTAATTGCTGAGAATAGAGGGGACAAATGCAATGACGT GGAGGGAAATGAAATACGATGGAATAAGAATGAAGACAAAATGGTATCATCATCGTCATCATCATCATGTGAAGATCACA AGGAGAGTAGCAGCAGTGTGAATTTGGACGGTGGTGATGATAACTGGAATTGGGAGAGTGTGATGGAGTTTAATGAGGTT GATGATGCATGGGAGCATAAAGAAAAACTGCTTACGTGGCTGTGGAATGATGATGATGACTGGGAAAGCGATGGCAACAA CAACTTGGGAGAGATGATGGATCCTGAGAAACAAAATGATGTTATTGCTTGGTTTCTGTCTTGAAAATTAATTTTGTGTG AAAATTAGGAAAGGAGAACATGAGGTGTAGAAAAATAATCTGCATGTGCTAGCTAGATTGGGAAAATTAGAATAGGCAAT GAATGATCATGAGTTTGTGTTTTATTACTCCCCCATTTTGCTCCCATTTGAGCATGTGTTCTCACCACCTGTGTTCCCTC ACGGCCTCACCCTTGTGTGTAGTAGTACTCTTGTATTCAATTTGTTGAGCAGAAAAAGGAAAAAAATATCTCCTCACATC AAGTACACTCATACTTAGATAAATTATGAAGAGAATAGAGATAAATGTGTTACATGATAGATGCTGTGATAAAAAATATA AAGAGGCAATAAGAAAATGTATGAAAATGAGCTAGAAAAGAAAGTGATGTAATAATATTAAAACGTAGTACACAAATATG CAATTTTTGTTTTAGACTAGACATATGCAAGAATAAGTTTTTATCCACACTTCTCTTATACTTAC
CDS sequence (LotjaGi5g1v0246700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAGAGGGAGGTGGACAGCAGAGGAGGATGAAATTTTATTGAA ATACATTCAGGCAAATGGGGAAGGTTCGTGGAGGTCATTGCCCAAAAATGCAGGATTGTTGAGGTGTGGAAAGAGTTGCA GACTAAGATGGATTAACTATTTAAGGACTGACCTCAAAAGAGGCAACATTTCTGCTCAAGAGGAAGATACCATCGTAAAG CTGCACGCTTCTTTTGGCAACAGATGGTCATTGATAGCAAGTCACTTGCCAGGGCGAACGGACAACGAGATAAAAAATTA CTGGAACTCTCATTTGAGCAGAAAAATCTACAGTTTTCATAGGGTAACTACTACTTCTACTACTACTACTATTGAGCCAA GGGTGCTGATGAGCATTCCTCCTCGCCCGCGAAGGGGTGGCAGAACTAGCCGTCGGGCCATGAAGAAGAACAAAAGCAGC TACACCCAAACTCAGATCAGGCCTAATAAACCAACTGTAATTTCGCAACCGAATAATGAAACTGCAGTTCCACTACCACC ACTGCTGCCGGCCCCGTCACTAGAAAAAGCAGCAGGGGTTGCTGATGAGGCAAGAAGTGAGGATTTGGAATTGACAGAAA CCACCGATGACGACGACATCTTCCTAGAACTGTTGGAGGTGGAGGGAGACATTAATGGCGGCACTGGTGGGGCGTTACGT TTGAGTGAGATGATAGAGAGTTGTTTGGTGGAAGAAGGAGAAGAAGGATGTGGGGTTCCGACATTAATTGCTGAGAATAG AGGGGACAAATGCAATGACGTGGAGGGAAATGAAATACGATGGAATAAGAATGAAGACAAAATGGTATCATCATCGTCAT CATCATCATGTGAAGATCACAAGGAGAGTAGCAGCAGTGTGAATTTGGACGGTGGTGATGATAACTGGAATTGGGAGAGT GTGATGGAGTTTAATGAGGTTGATGATGCATGGGAGCATAAAGAAAAACTGCTTACGTGGCTGTGGAATGATGATGATGA CTGGGAAAGCGATGGCAACAACAACTTGGGAGAGATGATGGATCCTGAGAAACAAAATGATGTTATTGCTTGGTTTCTGT CTTGA
Protein sequence (LotjaGi5g1v0246700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCEKVGLKRGRWTAEEDEILLKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISAQEEDTIVK LHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYSFHRVTTTSTTTTIEPRVLMSIPPRPRRGGRTSRRAMKKNKSS YTQTQIRPNKPTVISQPNNETAVPLPPLLPAPSLEKAAGVADEARSEDLELTETTDDDDIFLELLEVEGDINGGTGGALR LSEMIESCLVEEGEEGCGVPTLIAENRGDKCNDVEGNEIRWNKNEDKMVSSSSSSSCEDHKESSSSVNLDGGDDNWNWES VMEFNEVDDAWEHKEKLLTWLWNDDDDWESDGNNNLGEMMDPEKQNDVIAWFLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 374 | 373 | 8.1E-86 | ||
| PANTHER | 2 | 374 | 373 | 8.1E-86 | – | |
| ProSiteProfiles | 9 | 61 | 53 | 17.069 | ||
| Gene3D | 11 | 67 | 57 | 1.9E-16 | – | |
| SUPERFAMILY | 11 | 108 | 98 | 4.77E-28 | ||
| SMART | 13 | 63 | 51 | 5.7E-13 | ||
| Pfam | 14 | 61 | 48 | 1.5E-13 | ||
| CDD | 16 | 61 | 46 | 5.05101E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 24.201 | ||
| SMART | 66 | 114 | 49 | 5.7E-16 | ||
| Pfam | 67 | 112 | 46 | 4.4E-13 | ||
| CDD | 71 | 112 | 42 | 4.06891E-10 | ||
| Gene3D | 71 | 116 | 46 | 3.4E-19 | – | |
| MobiDBLite | 138 | 185 | 48 | - | – | |
| MobiDBLite | 156 | 182 | 27 | - | – | |
| MobiDBLite | 284 | 312 | 29 | - | – | |
| MobiDBLite | 286 | 312 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0246700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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