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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0247900 |
| Transcript ID | LotjaGi5g1v0247900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT3G16850.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|A7PZL3|PGLR_VITVI Probable polygalacturonase; TrEMBL-Plants: tr|A0A0R0KR00|A0A0R0KR00_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0247900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55665857..55669867) extracted from Lotus japonicus Gifu genome v1.2.
GTTTATGTTCTTGTTTTCTAGTACTTGGTTTGGTTGGCATTGTTATACCAAGTACCACTGCTTCTCTTCTTTCTCTTTGC TCTGTCCTCATGTTCTTCTTCTACTCCTAGTCCCAGTTCTCTTCCCTCTTCTTCACTCCCTCCTCGCCCCTCGTTCCTTC CCTTCTTCTCGAGGTTGCTGTTTTCACCTTGCTGGGACTGAAGAAGAGGGTAAGATACCATGAAGAGGCTAGTAAGTAGT ACGTTCTCTACTACAATTTTCAGACAATTTTTCACTGTGGGGTTCTTTTGTTTTCAAATTCTGTTGTAGCCTGCAAAGTT TTTTTTCCAACCCTCACAATTGATTGATGTTGATGTGGTTTTTGTAGTTATATTGTGTTATAATGTCTGAGATTTAATCA TAAATGAATGGCATCACCCTCCCTGAAATCAAATCTTGCAAACAATTTTGTAGGATCATATTTAGATAGGGATTAAGCTG TGGCCAGTTGATTGGGACATTGTCCTGTCTCACAAAATGGGTCTATGGATCTTTTTAGTAACATTCATGATTTATTGCAT TCTCCTGGCTTTCTAACTGGAAATCTTCTATTAATGGGTTGCTAGTTTGAATTACATGTTAATTTTGGTTTTTGATAATC CTGTTTATGATTCTTGTAACTCTAGTATTTATCCTTCAGTATCTCTAGAACATGTTTTGGGAAATTATATCAAGCTTAAT TAGTTTGCTTTGAGTATAGCTGGTTAACTGTTATGTTGTTTCAATAGTATTCCTGGTTACTCCTTTGGGAAAATGTGAAG TTTTCACACCTTTGATATCAAGTTGCATCTTCTGTCTGTTTGTTTTTGTAAATTATTTTATTTTCCTCTCTAGAGTCTAG CAATGAGTTGGTTCTCTGGGCCATAGGTAAAATCTCTTCTAGCCAAGGCTGAAATGGAATATTTGTTATACTTTTTTATT GTTTGGAAGTTTTTATGATTTGCCTGATTTTAAATTTGATTACATGCTCAGTGTTGGTCTCCAGATTGCATGTCTTGCAG TTTTTATGAAGTCCTTTAAAGTTTTTCCTTTTCTTTTTTCCTTTTCAGGTAACTGTGCTTTTACTTATAGCATTCAGCAC TGCTCTGGAAAGCAATGGGGATGATCATGGACCATGTAAGAAAATTACATTGGATCCTAGGCCTCACAGCGTGTCAATAT TGGAGTTCGGGGCAGTTGGGGATGGAAAAACATTGAATACAGTTGCATTTCAGAATGCAGTTTTTTATGCCAAGTCCTTT GCTGACAAAGGTGGAGCTCAACTGTATGTTCCATCTGGAAAATGGCTTACTGGAAGTTTTAACCTTACAAGTCACCTCAC TCTCTTCCTTGAGAAAGGCGCAACCATCATTGCATCACAGGTTTTCATATTTAATTTTAGTCCTCTTTCAATTAACTTGC TTATTTCTTATAAGAAACTCCAAGGAATACCATACAAATTTGTTTCTTGCACCCTTTCACAACTGTGTCAAGAGAAGTTC AATCATGATGGGAAATTCATGTAGTCGATTTATTTGGCATCATTTACTACTTTCAATCAAATTTATGCCATACAAACTGT GCGGAATGATAAGGTTCGCCTTAATCATATCTGCATCCTAACCAATAGCGTGTATATACAAGTAATGCAGAAGGGAAAAT GGAATCAACTTTTATTGTTGGTCTCTAAACCTTGCCTACTCTTGTTATCCTGCCTATCAGTCACCTGTCTCACTTCTGGA GCATGAAAATTGTGTGATTTTTCTGCAACCTACAGAAGCAAAACTATCTATGAAGATATTTATGGAAACACCAATTTTAC TCACTATGGAAAAGTTTTTACTTATGCCTTTTGTTTTATATAATTTTAGGATTATGCGCATTGGAGTGTAGCGGATCCCC TACCTTCTTATGGCCGAGGAATTGATATCCCAGGTGGGAGATATCGTAGCTTGATTTACGTAAATAACTTAACTGATGTG GTAATTACAGGCAAGGATATTCTTTCATTACAATAGATTCTTATTTGAAGTTTCTCTCATAGGATGCGCATTGCTTTGTT TCCATACTCAAATTCATGTATTTAATTAATGCATCAGGTTATGATGGAACTATTGATGGCCAGGGTTCTGTCTGGTGGGA CCTAATCAGTACTGGTGACCTAAATTATAGCAGACCACATATCATAGAACTTATTGGTTCTGATAATATCACAATCTCAA ATTTGACAATTTTAAACTCTCCTTCTTGGGGAATCCATCCAGTATATTGCAGGTACATGTAGCTCATGTTTGTGGTTCCT GACTAACTTGTTAAAAATGGAAGTGTTCTGCTTTATATGAATCCTCTTTACACAATCCATGCAGGTACGTTCAAATTCAT AACATAACAGTGCATGCACCGCCTGAATCCCCTCACACAAGCGGAATAGTTCCAGGTAAATTCAGAAGTTGTTAGTTTCT ACTTTACTGTTTGTTATAACACAATCTGTATCTTTGAACTGTGAACCTTTTAGCAAACTGAATTTTTTATTTGGCAAGCT TTAAGGGTTCTAAGTATGATTAAAGAAAGAATACCGTTCTCAATTCTCGTTCCCTTTCACAAATCTTCTGATTTTTTTGA AACTCAAGTGTTCATGATCAACATGTGGTTTAGTCTTGTAGTGATAGTTTCATGTACATTGATTTGCTTCAAGGATGCTC TTTTTCTTTTTTCATTGTGTGCATTATGGATCTCAATCATCTCATTACAATTTTCAATTTGCAGATTCTTCTGAGTACAT TTGCATTGACAAAAGCAATATTAGCACCGGTCATGATGCAATCGCGTTGAAGAGTGGTTGGGATGAATATGGAGTTGCAT ATGGCAAACCAACCTTGAATGTCCACATTAGTAGCGTTTACCTACAATCATCATCAGGTGCTGGATTAGCATTCGGAAGC GAGATGTCTGGAGGCATATCCAATATAATTGCAGAGCAGGTTCATATTATCAACTCAAAAATTGGTATTGAACTGAAGAC AACTAAGGGTAGAGGTGGCTACATGAAAGACATTTTGATTTCCGACACAAAATTGGAAAACATTCACTTGGGTATCGGCA TGATAGGAGACTACGGTTCCCATCCAGATGACAAGTATGATCCTAATGCAATGCCGGTTGTCGGTAGCATTACTTTTAAG AATGTGGTTGGTGGAAATGTTTCTATTGCTGGGAATTTTTCAGGGATAGTTGATTCGCCATTCGCACCTATCTGCCTATC AAATGTGACTTTTTCTATCAGTTCTGAGTCATCATCACCTTCATGGTTCTGTTCTAATGTAATGGGTTTCTCTGAAGAGG TGTTTCCTAAGCCATGTTCTGATCTGCAGAGCTCATATTCAACAAACATTCCCTCTTGCTATTCCTACCAGCATCATCCG TCATCTAGTTATGTCTCGAGCGTGTGAGATCACCGTCTCAAAGTCTAGTCATTCCTTTGATTCAACCTGTACATGTGACA CAAAATTCATATTTCATCAAGAACTACTTCATTACAATTTTCCAAATAAAAGGAAATTCTTGATTTAAAATTGTTCTTTC TCTTCAATGAACCTTCCTTTGTCTGTCTATGCAAAGTGTCTAGAGTGGTGTCAATTCCAAATAGTACATTTGTGTACAGC CTCAATTTCTTCATTCATGTACAAGAAATTTTTGATGTTGGTGTACAGCCTAAGACTATTTGCTTTCAATGTATAATTTG GAGTTCTATGTTGCTTGGTTGTCCATATGGCTTGGCTTTGAGAGGGTGTGTAGTGTGCTGGTTTTGACAAAACTAAGTTT TCTTTGCATAGTTTTTATGTTCGATTAATGACTTAGCTATGGTTGTCCATCATGTATAATGTGGTTTTATGTTTTGTTTA TTCGTTTTCCTGATTTTCTTGATATTGCATAACCATACATGTGGATGATATTTAGTATGAATGGATCTAGTTATCTCGAA TTGACTCTGAC
CDS sequence (LotjaGi5g1v0247900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGAGGCTAGTAACTGTGCTTTTACTTATAGCATTCAGCACTGCTCTGGAAAGCAATGGGGATGATCATGGACCATG TAAGAAAATTACATTGGATCCTAGGCCTCACAGCGTGTCAATATTGGAGTTCGGGGCAGTTGGGGATGGAAAAACATTGA ATACAGTTGCATTTCAGAATGCAGTTTTTTATGCCAAGTCCTTTGCTGACAAAGGTGGAGCTCAACTGTATGTTCCATCT GGAAAATGGCTTACTGGAAGTTTTAACCTTACAAGTCACCTCACTCTCTTCCTTGAGAAAGGCGCAACCATCATTGCATC ACAGGATTATGCGCATTGGAGTGTAGCGGATCCCCTACCTTCTTATGGCCGAGGAATTGATATCCCAGGTGGGAGATATC GTAGCTTGATTTACGTAAATAACTTAACTGATGTGGTAATTACAGGTTATGATGGAACTATTGATGGCCAGGGTTCTGTC TGGTGGGACCTAATCAGTACTGGTGACCTAAATTATAGCAGACCACATATCATAGAACTTATTGGTTCTGATAATATCAC AATCTCAAATTTGACAATTTTAAACTCTCCTTCTTGGGGAATCCATCCAGTATATTGCAGGTACGTTCAAATTCATAACA TAACAGTGCATGCACCGCCTGAATCCCCTCACACAAGCGGAATAGTTCCAGATTCTTCTGAGTACATTTGCATTGACAAA AGCAATATTAGCACCGGTCATGATGCAATCGCGTTGAAGAGTGGTTGGGATGAATATGGAGTTGCATATGGCAAACCAAC CTTGAATGTCCACATTAGTAGCGTTTACCTACAATCATCATCAGGTGCTGGATTAGCATTCGGAAGCGAGATGTCTGGAG GCATATCCAATATAATTGCAGAGCAGGTTCATATTATCAACTCAAAAATTGGTATTGAACTGAAGACAACTAAGGGTAGA GGTGGCTACATGAAAGACATTTTGATTTCCGACACAAAATTGGAAAACATTCACTTGGGTATCGGCATGATAGGAGACTA CGGTTCCCATCCAGATGACAAGTATGATCCTAATGCAATGCCGGTTGTCGGTAGCATTACTTTTAAGAATGTGGTTGGTG GAAATGTTTCTATTGCTGGGAATTTTTCAGGGATAGTTGATTCGCCATTCGCACCTATCTGCCTATCAAATGTGACTTTT TCTATCAGTTCTGAGTCATCATCACCTTCATGGTTCTGTTCTAATGTAATGGGTTTCTCTGAAGAGGTGTTTCCTAAGCC ATGTTCTGATCTGCAGAGCTCATATTCAACAAACATTCCCTCTTGCTATTCCTACCAGCATCATCCGTCATCTAGTTATG TCTCGAGCGTGTGA
Protein sequence (LotjaGi5g1v0247900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLVTVLLLIAFSTALESNGDDHGPCKKITLDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAQLYVPS GKWLTGSFNLTSHLTLFLEKGATIIASQDYAHWSVADPLPSYGRGIDIPGGRYRSLIYVNNLTDVVITGYDGTIDGQGSV WWDLISTGDLNYSRPHIIELIGSDNITISNLTILNSPSWGIHPVYCRYVQIHNITVHAPPESPHTSGIVPDSSEYICIDK SNISTGHDAIALKSGWDEYGVAYGKPTLNVHISSVYLQSSSGAGLAFGSEMSGGISNIIAEQVHIINSKIGIELKTTKGR GGYMKDILISDTKLENIHLGIGMIGDYGSHPDDKYDPNAMPVVGSITFKNVVGGNVSIAGNFSGIVDSPFAPICLSNVTF SISSESSSPSWFCSNVMGFSEEVFPKPCSDLQSSYSTNIPSCYSYQHHPSSSYVSSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 16 | 16 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 17 | 14 | - | – | |
| PANTHER | 5 | 448 | 444 | 5.6E-231 | – | |
| PANTHER | 5 | 448 | 444 | 5.6E-231 | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 457 | 436 | - | – | |
| SUPERFAMILY | 27 | 434 | 408 | 2.24E-93 | ||
| Gene3D | 28 | 422 | 395 | 5.4E-103 | ||
| Pfam | 39 | 96 | 58 | 2.1E-6 | ||
| Pfam | 134 | 416 | 283 | 7.9E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0247900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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