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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0248800 |
| Transcript ID | LotjaGi5g1v0248800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT1G02790.1 polygalacturonase 4; Swiss-Prot: sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184; TrEMBL-Plants: tr|I1JBJ8|I1JBJ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0248800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55713902..55716393) extracted from Lotus japonicus Gifu genome v1.2.
CATAGGAAAAGGGGGTTCTAAATTGCAGTTTGGTTGCGATAATAACAGCAACCACAATATCACATTGAAAGCTGCAATTT AAAACCTTATATATTCTGAATTTTTAGCTGCATTCACCATGGCTACGGAGATCATTTACTTCTTAGGCATTGTTTTCCTT TCTTGCAGCATGATAGATGCATCCCGTGGCCATGGGGCTCACCGTACCCTCCTCCAAGTTGGTGGCGGCGGTGGTCCTGC AGTTTTCAATGTGATGAAATATGGTGCGGTTGCTAATGACAAGACGGACAATGTTGATGTGAGTTAAATTAATTTTTTTA CCTAGATTCAATGAATTCATTCCAAGATATCATTCTTTTGACATACAATCGCCATGCATATTAAGTGCAATTTTCAATCG CGGCAAACATTTGCGACGGTTTTTTTAACTGCTGCGTGCTAATATTTATGTTTGTATGTTATGGGAATCTATATATATGT TTACAAATTAAATTTTTTCCCTTAACTCTCTAAGTAAGGTTTAAGGTTCGAGTACTATGAGTGAAAGAATAATAAATATG GTGAAAAAAGAAAAATACATGAAAAAAAATGAATGAAGATATGTAAGGAAATAGGAAAAAACATGTTTGATGAAAATTTA ATAATCTATGATATTTATGCAGGCATTTAGAGCTGCATGGGCAGACGCATGCAAAAAAAGCACAACTCAAGCAAAGCTTT TGATCCCAGCAGGAACATTTCGTGCTGGTCCAACTATGTTTGCAGGACCATGCACCAGCCCAAGCCCCATCACCATTGAA GTTGAAGGAACAGTTAAAGCTACCACTGACCTATCTGAGTATGTTAGTCCAGAATGGTTCACAATTCAAGACATTCATGG CTTGGTGTTGACTGGTAAAGGAGTTTTCGATGGCCAAGGAGCTGTTACTTGGCCGCTCAATGACTGCAAGAAAACCAAGG GCAATTGTGCTCCCCTCCCTGCGGTAAGCTTGTTGCACGAACATATATTAATAATCTTATATTATATTTCTAACACGTTT TTTATGCAATGTTGTATTTTATGAATGCAGTCACTGAAATTCTTTAAGGTGAACGATTCCATCGTTAGAGACATCACGTC GCTAAACAGCATGTATTTCCACTATCATATTCATGGCTGCAGCAACGTCACATTCACTAACCTCACCATAACAGCCCCCG GAAACAGTCCAAACACAGACGGCATGCACATCAGTACAAGCGATAGGATCACAGTCACTGACAGCACCATTGGAACCGGC GATGACTGCATTTCCATTGGACACAGCACCTTAAACATTTCTATCCACCGCATCACATGTGGTCCTGGTCATGGCATTAG CGTTGGAAGCCTAGGTAAGAGGCCGGATGAACAAAGTGTGAATGGCATCACCGTTACAAATTGCACCTTTGTGAACACAA CCAACGGTGCTAGAATCAAAACATGGATTGGGACACACCCAGCTGAGGCAAAAAACATTGTCTATGAAGACATCATCTTG GACGGTGTTCAGAATCCCATTGTTATTGACCAAAGTTATGGTTCCAAGAAGAAAAGAGCGGTAATCAACTTAACTATACA AAGATGATGATTATCATTTTATTATTGAGACCTTTTTAGCTTTTTCAATATTCTTATAATGTGTACTATGTGTAAATGTG CAGCCATCAACTTCAGTGTGGAAGATCAGTGATGTTCATTTCCGCAAGATAAGAGGAACTACAGTATCAAACGTTGCAGT GTCTTTGCAATGCAGCTCAAAGAACCCCTGCGAAGGTGTTGAGGTAGCCGACGTGGATTTGGCTTATGCCGGCCGTCCAG GAAACACAACTTTCGTATCGTCTTGTTTGAATGCAAAAGCTACTTTTGGAGGGAAACTCAACCCCCCAGCTTGCTAATTT TTTTCATTAATTTTTCGTGAACCATAAAACCGCAATGACATCGGCGACACCAGCTTTTGTAGCAGTTTTAGACCTTCACA AACCGCACTTGATGGTTTTTTTTTAACTTTCCATTTTGTGTCACTTTGTAGCGGTTTGATCGCGACAAAAGTGGACGTCG CCAATTGTAGTTCACATATCAGCGTTGATTTTTTTACGAAGTAATATGGGTTCCATTTACCAGCATGGGATGCTAGTTGT TTGATGTCAAGTATGTAGATATGACACTCTTTGTTGATGTGTATATAGCTTGGACCTCGTGGAGGTAATGTCATCCTTAA AATATTGAAACTATGACCTTCTAATTAAGGTCTTCTTTTGAATCCTCCATTTTTCATTTCATTTACAAGGGCCTGAGCTC GCTCTAGTAACCCTATATTGTGCTTCCATCGTTCGTGAAATTGTCGCTACAAATATCAAATATATGATTGATTTAATGTT TTTAAACAAATCTGTTAGAAAGTCGTCTAAGGTTTGCGTTTGTTTTTCAGTTAAATAATCCATTTGCTACATATGGGAAT TCTAAATTTCAC
CDS sequence (LotjaGi5g1v0248800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACGGAGATCATTTACTTCTTAGGCATTGTTTTCCTTTCTTGCAGCATGATAGATGCATCCCGTGGCCATGGGGC TCACCGTACCCTCCTCCAAGTTGGTGGCGGCGGTGGTCCTGCAGTTTTCAATGTGATGAAATATGGTGCGGTTGCTAATG ACAAGACGGACAATGTTGATGCATTTAGAGCTGCATGGGCAGACGCATGCAAAAAAAGCACAACTCAAGCAAAGCTTTTG ATCCCAGCAGGAACATTTCGTGCTGGTCCAACTATGTTTGCAGGACCATGCACCAGCCCAAGCCCCATCACCATTGAAGT TGAAGGAACAGTTAAAGCTACCACTGACCTATCTGAGTATGTTAGTCCAGAATGGTTCACAATTCAAGACATTCATGGCT TGGTGTTGACTGGTAAAGGAGTTTTCGATGGCCAAGGAGCTGTTACTTGGCCGCTCAATGACTGCAAGAAAACCAAGGGC AATTGTGCTCCCCTCCCTGCGTCACTGAAATTCTTTAAGGTGAACGATTCCATCGTTAGAGACATCACGTCGCTAAACAG CATGTATTTCCACTATCATATTCATGGCTGCAGCAACGTCACATTCACTAACCTCACCATAACAGCCCCCGGAAACAGTC CAAACACAGACGGCATGCACATCAGTACAAGCGATAGGATCACAGTCACTGACAGCACCATTGGAACCGGCGATGACTGC ATTTCCATTGGACACAGCACCTTAAACATTTCTATCCACCGCATCACATGTGGTCCTGGTCATGGCATTAGCGTTGGAAG CCTAGGTAAGAGGCCGGATGAACAAAGTGTGAATGGCATCACCGTTACAAATTGCACCTTTGTGAACACAACCAACGGTG CTAGAATCAAAACATGGATTGGGACACACCCAGCTGAGGCAAAAAACATTGTCTATGAAGACATCATCTTGGACGGTGTT CAGAATCCCATTGTTATTGACCAAAGTTATGGTTCCAAGAAGAAAAGAGCGCCATCAACTTCAGTGTGGAAGATCAGTGA TGTTCATTTCCGCAAGATAAGAGGAACTACAGTATCAAACGTTGCAGTGTCTTTGCAATGCAGCTCAAAGAACCCCTGCG AAGGTGTTGAGGTAGCCGACGTGGATTTGGCTTATGCCGGCCGTCCAGGAAACACAACTTTCGTATCGTCTTGTTTGAAT GCAAAAGCTACTTTTGGAGGGAAACTCAACCCCCCAGCTTGCTAA
Protein sequence (LotjaGi5g1v0248800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATEIIYFLGIVFLSCSMIDASRGHGAHRTLLQVGGGGGPAVFNVMKYGAVANDKTDNVDAFRAAWADACKKSTTQAKLL IPAGTFRAGPTMFAGPCTSPSPITIEVEGTVKATTDLSEYVSPEWFTIQDIHGLVLTGKGVFDGQGAVTWPLNDCKKTKG NCAPLPASLKFFKVNDSIVRDITSLNSMYFHYHIHGCSNVTFTNLTITAPGNSPNTDGMHISTSDRITVTDSTIGTGDDC ISIGHSTLNISIHRITCGPGHGISVGSLGKRPDEQSVNGITVTNCTFVNTTNGARIKTWIGTHPAEAKNIVYEDIILDGV QNPIVIDQSYGSKKKRAPSTSVWKISDVHFRKIRGTTVSNVAVSLQCSSKNPCEGVEVADVDLAYAGRPGNTTFVSSCLN AKATFGGKLNPPAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 6 | 402 | 397 | 1.7E-152 | – | |
| PANTHER | 6 | 402 | 397 | 1.7E-152 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 414 | 393 | - | – | |
| Gene3D | 34 | 408 | 375 | 6.6E-111 | ||
| SUPERFAMILY | 39 | 414 | 376 | 6.15E-115 | ||
| Pfam | 73 | 401 | 329 | 1.8E-90 | ||
| SMART | 197 | 223 | 27 | 3.7 | ||
| SMART | 224 | 245 | 22 | 390.0 | ||
| ProSitePatterns | 254 | 267 | 14 | - | ||
| SMART | 277 | 298 | 22 | 4.1 | ||
| SMART | 307 | 328 | 22 | 4400.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0248800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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