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LotjaGi5g1v0249300.2

Overview

Field Value
Gene ID LotjaGi5g1v0249300
Transcript ID LotjaGi5g1v0249300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Pectinesterase; TAIR: AT4G02320.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|O81301|PME40_ARATH Probable pectinesterase/pectinesterase inhibitor 40; TrEMBL-Plants: tr|A0A0L9VH61|A0A0L9VH61_PHAAN Pectinesterase; Found in the gene: LotjaGi5g1v0249300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:55783276..55789443) extracted from Lotus japonicus Gifu genome v1.2.

ACCAATAATTATTTGTCCACACCTCTAAATTGAGGTGGAAAGAGGTGGAGGAGGAGAGAGATATGAAGAAAAGAAAAAAT AAGAGAGAGAAAGTATAAGATGTGTTATATAATAAGAGGAGATAGATAAAAATAAAAATAGGTGGAAATCAAGTGTATAA ATAAGGAGGTGTGTATATATTATTACTCCATATATACCCTGTTGCCTTGGAAGGTTGTTTAATTTTAATTAGAACACTAA AACTACACTAAAACTGCCTACATTATATTGACAAAGTGAGTCCGACATCTCGTTACTCAGTCACTCTGGAGCTTTATATA CCCTTCTGCTGGATCACATTTAGACACTAATTCAGCTGCATCACACACAGGAATCACTATTCCTCTCCTTCTCTAGGATG AGGAATCTCAGAAGAGCAGCACCGATTCTACCTCTTGTACTCATCTTGACCATAGTGTTTCCACTACTCATTTTCAAAAC CCATTTCACTGAAACCAAACCACAAGAAAAACACCTCCACATCCAAAAGCACATACAAACAGCCCAATCCACATGCCAAG GAACACTCTACCCAGACCTATGTGTCTCCACCCTCACCACATTCCCAGATCTCACCTTAAAATCTGTCCCACAAATGATC TCCTCCATGGTCAACCACACTGTCAACGAAGTCAAAGCCTCCTCCTACAACTGCACCGGCCTCAAAAAGCAGCTCAAAAA CCTCCAGCCACTGGAACAAAGAGCACTCGACGACTGTCTCCATCTCTTCGACGACACCGTTCTGGAGCTCAAAACCACCA TTTCCGACCTCTCCAAAGCCACAATAGGCTCCAAGAGGCGCCATGACTTGCAGACATTGTTAAGCGGCGCCATGACTAAC TTGTACACTTGCCTTGACGGTTTTGCTTACAGCAAAGGGAACGTGAGAAGGAGAATTGAGAAGAAGCTGATTCGGATATC GCGTCATGTTAGCAACGCTTTGGCAATGTTCAAGAAAGTTCCTCAAGTGAAGGAAAAAATGTCTGAGAATGATGAGGTTT TTCCTGAATATGGTAAAATGAAAAACGGGTTTCCTTCTTGGGTTTCCAACAAAGACAGAAAGCTTCTTCAAGCTTCTGTG AGTGAGACTAAGTTTGATCTTGTTGTTGCTAAAGATGGTAGTGGGAATTTTACTACTATTGGGGAAGCAGTGAATGTGGC TCCTAACTCTAGCACTACCAGGTATGAACCATTTTGATGATGTAATGTGTTCAATATAATTATGATGTTTTAGTTTTGAC TTTTGATTGTGGTGCTGATTGTTTGTGTGAACAGGTTTGTGATACACATAAAAGCTGGGGCGTACTTTGAGAATGTGGAG GTGATCAGGAAGAAGAGCAATCTGGTGTTTGTAGGAGATGGGATTGGAAAGACGGTGGTGAAAGCTAGTAGGAATGTTGT GGATGGCTGGACTACTTTCCAATCAGCTACTGTAGGTCAGTCTTCTTGTTTCTTTCTTCTGCAATAATTCTGGATAATTA TCTCTTTCAATTTCTTTGTTAAACTCAATGTGAATTTATGTTAAAGTAAATGTATCAAAATCTCACTTTTCTCATCTAAA TTTAATGTGAGAAATTCTAAATTCACCATTAGTATTTTGAGGTAATTGAAATTTCATTGGTGTTAATGCCAATAACAAAT TCTTCATTTACCTGTTGGTCAATCTCATATGCAATTTTGATCTAAAATTAATTTTAAATAATAATATAAATGCTAGGGAC TCACTTTGAAGAATTATTTTTAGACATAAAATAAATTTTGTTTGAAAGTAGGGAGATTAATTTCTGCATTAGACATAATC AAATTTAAGATTTTATTTCTACATTTGATAAGATTATCCTTAAAAGCATCGTTTTCTTATATGAATTCAAACATAAGGAA TCATATTTTAAGTGATAAGAGTTATGAGACATATAAGTTGGAAAGAGGTAGATTCAAAGATTAATTTTTACGTTAGACAT AATCAATCTGGAAATATGAAACCTAAATTTGTGAATTGAATATATGCGGATAACTTATTTATGAGTGATTCAATAAACCA ATAAATCATAACTTCAATACTATCTTATGACTCAAATGTAACTACCTAGTTTAGAAGTGAAAATTACCATAAAATTTATA TAAAAATGTTAAATGTACAAACAATTTGGTCCCCCAATCTACATACCATTTAGGGGGAAGCTTTAGCCGTCACTGGTGTT TTCACAAGTCGCTGCTAACTACACACATAAGCACTCAATTTATAAAAACTTGTTTACTCATATCTCAACTGAACATGAGA CCGTAACATCTAATCAGAGATATTCACCAGTGAGATTTGGTAGCTCGGTCGTTTAGTAAGCTTGATAAATGGTTTACTAA GAGCTGGCGGTGTGGCTGTTATGTTAAAGACAAAGAACAAAATCTTTAAAAATGACAGAAAAAGACAACAAAATTGGCCA ACTTGATAGTGAGTTCACGTGTTTGGTCATGAATTATTACCAGATTCAACAAATATGTGAATTTATAATTGAAAAACACA CATGATAGGGAAGTCATCTTAAAATGTTTGTACCAGACACGGATTCCATTGGGTATGTCGAGGCATATTGCAGTTCATTG AATAGAAAATTAACCTTATAGATGAAGCAGAGGTATATCTGCGTTCTGTTATATCTTCTTATAATTCAGATATCACGGGC TAAATTAATGTCGGTCGTTATTTGACAAACGCTAATGCCAAAAGTAAAATGCTAGCTAGTACTTCATATCATCATGTGAA ACACTGTCTGTCGAGCACTACTTGGTTTTGATTGTTAGAAAGAACCATGGAAAGTTCAAAAGGTAATTAAAAGGCTTTGC CCACTTGAATCCTCGAGGATTCTGCTTCCCGTGATTGAACTTAGTGCTGAGAATTTAAAGGTGATGGGTCCATACATTTA TATATGTTTTATTAAGGGTCAATTTTCAGCTCCACCCTCAAACTCTTAAGGGTCCATACATTAGATTATTAGAATATAAG AGACTCGTAACTCACCTAAATGCTAGCTCAAGAATTTAAGATTACTACACCCTTTATAATTGTCGTCTATATCATATTTT TAATCAATATGAAACTTTAGACTATTGTAACTGATAGCGGCCATTTCAGTGAAGGAAAACATAGTAAATTGGACTAAAAA GGGATTAGAAAGTACACATACACATACATGCATATAAAGTGAGATGTATAGATTCAATCATATACTGGATAACTGGAAGG TGATACCATTACCACACAAGTCACAATGCTAAAATACAAGTATCAATGAGTTCTCAAATAAAATACTCTGAGCTTCCTGT GCCGACACCTTTGTAATAAGAACAAAAGAACAAAACAAGAGCAGGGGAATGTAAGGCCTTAGGTTCACGTTACCATTAAG TTGGGTCAAAGGATATGGGTCCACACTCCACATGTCCAAACCAACTGATTAAAGAGGATTTCCATTTTGGATCCAACTAC TTTTCAGAGCCACCAGGCCCACTGTGCTTGCTACGTAGCTCACTAGCTCTCTTATCTCATGCTTCGCTTTTGACCCCAAA AAAAAATATTCTTATTCTTCGCTTTTTGTTTCTTCCCAAGAACATGCTTTGCCTTTTGCTTTAAACTAATAAAAATATGT CATTGACAAAAAAAACATTGTTTTTTTTCTTCTTCTGGGAGAACATTGAAATGAAAAACAGAAGTCAGCTATATGATATC AATTTATGTGATAATAAATTCCATCTAGGACAAATATTATGATTTGTGTCACTCCCAAGTCATCTCGTGCCAATGATCCG ATCAATTACACACGCTCAGGGTCCAAGCCCATCTCCAAAGCTATCATGTGACCTTCACTTGATCCATAAAAAGGATATAT TCCCAAGTCCTCAGTTCTCAAAAATCATCCTTCAAAGTACCTTGATATTAAAGAACTTCATGTAACCAACGATTTAAAGA CAATAAACCGTAATAGTAAATAGTTCATGTCACCCCAAAAAGTAATGAAGTCAATTATTGTCATACTTAATAGGCAGGGC CGGTCCCGACATTTTGGAGGCCATGGACAAATAATAAAAATGGACCTCTAATAATTTTAACGTTCGAAATTTCATCAAAA TCATTATAAAAGTAACATATACAGTTACTAACCACTAAACCAGCTCAAGTCATTAATAACATTTTAAACATTAATTATTA TAACTAAATTGTATTTTAGGGGAAAGTTTAATGATATTTTTTTTGGGCCTCTTCTTTTTTGAGGCCCTGGGCTGTGGGCC TACTTGCACAGGCCTAGGGCCGGCCCTGTTAATAGGTAATAAAGCACATAATAATACTAAAACCCCCCACCAACCCAAGA CACAAGAGAGTGATATAGAAGAAAAAGAAATCTAAGAAAAGAGCATCTTCACTCTAACGCCAATACAAACCTAAGCTTAG CAATTCACCCTTGATCTTGGAACCCTACATTTTAGGGAGAACAATTTCTTTTTTCACAATGATATGCTCTTCTTTTGGGG GCTAGCTAGGAAGCTTTAATATGATATATTCACAATTATTTATTATTGGCTTAATGCACTTTTTGCCCCCTAGTTTAGAC TATGTTTAATTTTAGTCTCCCAATAACTTTTTAGTTTTAAAATCTCAATTTTTTCCTCTCTAAACTCTAATCTCATATTC TACAAAATCCTTCAAAACTTCACTAACATTTGAAGTTTTTACCTTTTAAAATTGTCAAATCCTTAATAAACCCTAAAATA TTTGAAAAGAAAATGAAGATATCTTGATTTTATGCATATAAAAAATGAGAGAATGACAAAATTTGCTTAATTGTATAAGT AGATAGACACCTATCCCCTATGGTTTAAACTTTAAACTAAGGACCAACAATGATTAAAAAAAAAATAACTAAGGACCAAC AATATAATGAAAAAGTGAAAATTAGATGTTTACAAAACATTAGTATATTTTCATCAAGTTCACTTGGACAAAAGCTCTAG TTTTTTCAAGAATCACTTCTCCTTATTGTTTGTTTTTACAGTCTAATCCGATAGAAAAGTTATTTTTGATCCTCACAAGT TTGTCATTTGCAACATTTTTCAGCTGTAATTGGAGACAGATTCATAGCAAAAGGCATAACCTTCGAGAACTCAGCCGGCC CGGAAAAACACCAAGCCGTAGCCCTCCGCAGCGGCGCCGACTTCTCCGCCTTCTACAAATGCAGCTTCGTTGGCTACCAA GACACCCTCTACGTCCACTCCCTCCGCCAGTTCTACCGCGAGTGCGACATCTACGGCACCGTGGACTTCATCTTCGGCAA CGCCGCCGCAGTATTCCAAAACTGCAACCTATACGCACGTAAACCGAATGATAATCAGAAGAACATGTTCACCGCACAGG GAAGAGAGGATCCTAACCAAAACACTGGGATATCAATCTTGAACTGCAAGGTTGCAGCTGCTGCAGATTTGATACCTGTG AAGTCGACGTTCAAGAGCTACCTTGGTCGTCCATGGAAACTGTATTCGAGGACGGTTTTTCTGAAGTCTTACATGGAGGA TTTGATTGATCCTGCAGGGTGGTTGGAATGGAATGACACGTTTGCGTTGGATACGTTGTATTATGGGGAATATCAGAATC GGGGTCCGGGTTCAAACACTAGTGCAAGAGTTAAGTGGGGTGGTTATAGGGTCATTAATAGTTCAACTGAGGCAAGTCAG TTTACAGTTGGGCAGTTTATACAAGGGAGTGATTGGTTGAACTCCACTGGCATTCCCTTCTACTTTAATTTGAGTTGAGT GAGATGGCCCACCATTTTTATAATAATGTTTCTACTCGGAGACAGTATAAAAAGGGTAAACCTGACTCGAACATGTGACA ATAAAGTTACATGCTAGCAATGTTATTGTTGCATCGAGGCTCGCCCTTCTCTGTAACACTATCTTTTGATGAATATATGC AATTTATTCAAATGCTTTGAAATGAAATGAGTGCTATGTATCTCCTTCATTAGGTTATATATAGGCTCCATAGTGGATGA GGTTTAGTGTAAATCTTTTAACAATTTTTGTTGTCTCTTCTGTTGTTTTCTAAGAATCTTCAAATTGGAGAGTTTTCTAC CTTGTCAC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0249300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGAATCTCAGAAGAGCAGCACCGATTCTACCTCTTGTACTCATCTTGACCATAGTGTTTCCACTACTCATTTTCAA AACCCATTTCACTGAAACCAAACCACAAGAAAAACACCTCCACATCCAAAAGCACATACAAACAGCCCAATCCACATGCC AAGGAACACTCTACCCAGACCTATGTGTCTCCACCCTCACCACATTCCCAGATCTCACCTTAAAATCTGTCCCACAAATG ATCTCCTCCATGGTCAACCACACTGTCAACGAAGTCAAAGCCTCCTCCTACAACTGCACCGGCCTCAAAAAGCAGCTCAA AAACCTCCAGCCACTGGAACAAAGAGCACTCGACGACTGTCTCCATCTCTTCGACGACACCGTTCTGGAGCTCAAAACCA CCATTTCCGACCTCTCCAAAGCCACAATAGGCTCCAAGAGGCGCCATGACTTGCAGACATTGTTAAGCGGCGCCATGACT AACTTGTACACTTGCCTTGACGGTTTTGCTTACAGCAAAGGGAACGTGAGAAGGAGAATTGAGAAGAAGCTGATTCGGAT ATCGCGTCATGTTAGCAACGCTTTGGCAATGTTCAAGAAAGTTCCTCAAGTGAAGGAAAAAATGTCTGAGAATGATGAGG TTTTTCCTGAATATGGTAAAATGAAAAACGGGTTTCCTTCTTGGGTTTCCAACAAAGACAGAAAGCTTCTTCAAGCTTCT GTGAGTGAGACTAAGTTTGATCTTGTTGTTGCTAAAGATGGTAGTGGGAATTTTACTACTATTGGGGAAGCAGTGAATGT GGCTCCTAACTCTAGCACTACCAGGTTTGTGATACACATAAAAGCTGGGGCGTACTTTGAGAATGTGGAGGTGATCAGGA AGAAGAGCAATCTGGTGTTTGTAGGAGATGGGATTGGAAAGACGGTGGTGAAAGCTAGTAGGAATGTTGTGGATGGCTGG ACTACTTTCCAATCAGCTACTGTAGCTGTAATTGGAGACAGATTCATAGCAAAAGGCATAACCTTCGAGAACTCAGCCGG CCCGGAAAAACACCAAGCCGTAGCCCTCCGCAGCGGCGCCGACTTCTCCGCCTTCTACAAATGCAGCTTCGTTGGCTACC AAGACACCCTCTACGTCCACTCCCTCCGCCAGTTCTACCGCGAGTGCGACATCTACGGCACCGTGGACTTCATCTTCGGC AACGCCGCCGCAGTATTCCAAAACTGCAACCTATACGCACGTAAACCGAATGATAATCAGAAGAACATGTTCACCGCACA GGGAAGAGAGGATCCTAACCAAAACACTGGGATATCAATCTTGAACTGCAAGGTTGCAGCTGCTGCAGATTTGATACCTG TGAAGTCGACGTTCAAGAGCTACCTTGGTCGTCCATGGAAACTGTATTCGAGGACGGTTTTTCTGAAGTCTTACATGGAG GATTTGATTGATCCTGCAGGGTGGTTGGAATGGAATGACACGTTTGCGTTGGATACGTTGTATTATGGGGAATATCAGAA TCGGGGTCCGGGTTCAAACACTAGTGCAAGAGTTAAGTGGGGTGGTTATAGGGTCATTAATAGTTCAACTGAGGCAAGTC AGTTTACAGTTGGGCAGTTTATACAAGGGAGTGATTGGTTGAACTCCACTGGCATTCCCTTCTACTTTAATTTGAGTTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0249300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRNLRRAAPILPLVLILTIVFPLLIFKTHFTETKPQEKHLHIQKHIQTAQSTCQGTLYPDLCVSTLTTFPDLTLKSVPQM ISSMVNHTVNEVKASSYNCTGLKKQLKNLQPLEQRALDDCLHLFDDTVLELKTTISDLSKATIGSKRRHDLQTLLSGAMT NLYTCLDGFAYSKGNVRRRIEKKLIRISRHVSNALAMFKKVPQVKEKMSENDEVFPEYGKMKNGFPSWVSNKDRKLLQAS VSETKFDLVVAKDGSGNFTTIGEAVNVAPNSSTTRFVIHIKAGAYFENVEVIRKKSNLVFVGDGIGKTVVKASRNVVDGW TTFQSATVAVIGDRFIAKGITFENSAGPEKHQAVALRSGADFSAFYKCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFG NAAAVFQNCNLYARKPNDNQKNMFTAQGREDPNQNTGISILNCKVAAAADLIPVKSTFKSYLGRPWKLYSRTVFLKSYME DLIDPAGWLEWNDTFALDTLYYGEYQNRGPGSNTSARVKWGGYRVINSSTEASQFTVGQFIQGSDWLNSTGIPFYFNLS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 6 6 - –
Phobius
TRANSMEMBRANE
7 26 20 - –
TMHMM
TMhelix
7 26 20 - –
PANTHER
PTHR31707:SF223
13 558 546 8.0E-264 –
PANTHER
PTHR31707
13 558 546 8.0E-264 –
TIGRFAM
TIGR01614
19 200 182 1.4E-23
IPR006501
Phobius
NON_CYTOPLASMIC_DOMAIN
27 559 533 - –
SMART
SM00856
44 197 154 2.6E-32
IPR006501
Gene3D
G3DSA:1.20.140.40
47 202 156 7.4E-17
IPR035513
Pfam
PF04043
49 197 149 2.3E-26
IPR006501
SUPERFAMILY
SSF101148
50 201 152 8.11E-28
IPR035513
CDD
cd15798
51 202 152 3.26521E-38 –
Gene3D
G3DSA:2.160.20.10
241 558 318 3.8E-135
IPR012334
SUPERFAMILY
SSF51126
244 556 313 1.12E-119
IPR011050
Pfam
PF01095
247 543 297 2.0E-147
IPR000070
ProSitePatterns
PS00503
391 400 10 -
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0249300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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