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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0249500 |
| Transcript ID | LotjaGi5g1v0249500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT1G02810.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7; TrEMBL-Plants: tr|G7IEK2|G7IEK2_MEDTR Pectinesterase; Found in the gene: LotjaGi5g1v0249500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55804089..55806693) extracted from Lotus japonicus Gifu genome v1.2.
TCATCCTTCTACAACAACCACTATTTCCCTTCATCTGAAAAAACCATGGCTCTCAAAAGCTTCTCCCTCTTGACATTTTT CATTTCCTATCTCTTTTCTTTCTTGGTCTTGGAGCTGGCATTAGCTGATGGAGGGTCATTACCCTCCACCATTCCACCCG AAACCATTTGCCAGTCCACCGGAGACCCTGCTTATTGTAAAAATGTTCTTGCCAATCAAAATGGCAACATCTTTGACTAT GGCCGCATTTCCATTCGAAAGTCCATGTCTCAGTCCCGCAACTTCTTGAACCTAGTGGACTCATATCTTCAAGGTAGCTC ATCTTTGTCTCAATCCACAGTCCGCGCCCTTGAAGATTGCAAATTCCTAGCAGACCTCAGTTCAGAATACTTATCAAACA CCTACACTACAACAAATCAAGCTAGTGGTGTTCTTCCCGATTCTCAAGCGGAAGATTTCAAAACATTTCTCAGTGCCGTT TTGACTAACCAACAAACATGTTTAGATGGCCTTCAGACTACAACTTCTGATCCAAGAGTCAAGAACGACCTTTCATCGTC ACTCTCTAATGACATGAAGCTTCACAGTGTCACATTGGCCTTGTACCTTAAAGGTTGGGCGCCTCAGAAGAATATCAAAA CCTCATGGCCACAAAATGGGAGACATTTGAATTTCAAAAACGGTCGCTTACCATTGAAGATGTCGGACAAAGCACGTGCT ATTTTTGATTCTGCTAGAAACCATGGAAGAAAATTACTTCAAACTAGCACTGGTGACGATAGTGTTGTGGTAAATGACAT AGTGGTGGTTAGTCAAGATGGGAGCGGAAACTTCACCACTATCAATGATGCAATAGCTGCTGCACCTAATAACACAGCCG CAAATGGTGGTTACTTCTTGATTTTTATCAAACAAGGTGTGTATCAAGAGTATGTATCTATAGACAAAAAGAAGACGTAC TTGATGCTAATTGGAGAAGGAATCAACCGAACAATTATAACCGGCAATCACAATGTTGATGATGGTTCCACAACATTCAA CTCAGCAACATTTGGTAAGTAAAAGAAACAGTTATAAATCATTAAACAATACAGACACACACATATACCACATTTTTTTC TCCATCTTTACTTTTTTATCATATCATTTCAATTACCTTTTTCTCTTTTCTTCATTTCTAACTCCAGTGTATCTGTACCT ACTAAATTTCTATCTTAAATTCTTCAAATCACATGATACTAAAGAAAATTGCCGGTAATTAATTTTTCAGTAGCTAATAC ACTAAAATCGGTTGCTCGCAGTTTAGCGACTGAATTCGCGAATGATTTTTTTTCCAATATGTCACTATATAGTAAATTTC TATTAGTTATATATACGATAATACTTACATAAATGTTGTAGTAAGTTTCCTTGATTTGTGGCATGAAAGCAATTTACGTA TCAAGATAGTACATGTTATTTACAATAGAATTTTTATGTGGTAAAATTAATTTGTCAAGAAGTCAATTTAATTTGTGAAT CGTTGATTTGTGTGCATTTGCAGCTGTAGTCGCTCCAGGGTTTGTAGGAGTTAACATAACATTCCGCAATACAGCTGGAC CAAGCAAGCACCAAGCAGTTGCAGTGAGAAGTGGAGCGGACATGTCCACCTTTTACAGTTGCAGCTTTGAAGGATATCAA GACACATTGTATACACATTCTTTGAGGCAATTTTATAGAGAATGTGATATATATGGTACGGTTGACTTCATATTTGGAAA TGCAGCTGTAGTTTTGCAAAACTGCAACATCTATCCACGCCTTCCACTTAGCGGACAATTCAATACCATCACAGCTCAAG GTCGAACTGACCCAAATCAAAATACAGGAACTTCAATACAAAATGCAAATATTAAGGCAGCTGATGATTTGGCTCCGAAT GTTGGTACTGTGAGAACATATCTTGGGAGACCATGGAAACAGTATTCAAGGACAGTTTTCATGCAGTCCTTCATGGATAG TTTTATAAACCCCGCTGGTTGGAGTGAATGGAGTGGTGATTTTGCATTGAGTACCTTGTACTATGCTGAATATAATAACA CAGGACCTGGTTCAAACACTTCAAATAGAGTGACGTGGCCTGGTTATCATGTTATCAATGCTACCGATGCAGCTAATTTT ACTGTGTCTAACTTCTTAAGCGGGGATAGCTGGATTCCTCAAACTGGTGTTCCATACTCAAGTGGATTGATATAGTCAAT CTTATTCTTTCAGAGAGTCAACTGGTTGTTCACTTATTTTGGATTTCAGAATTACATTCTTCTTCATGTTGTTTAAAAAT GAATAAAGGTTCTATTATTCTGTTGTAAAGATTGTTATTAATATTAACTTTTATTATTGTTTTTGTTTGGCCGAAAAGTG AACATTGATTGTGCAGTTCAACCCATTCCCTTAAAAATGAGGCCGGCCCATGGCCCATTCCAGTAGAGACAAATCCTGAT CTCTCACGTGCTACGCGAGTTCCTCGCATTCTTAGAATATTGACCCCCCCAAAAAAATAGTATTCTTATATATGCCAGAT AATAATAAAGTTGGTATTGTTGGACCCAATCATTAAATAGTGGAT
CDS sequence (LotjaGi5g1v0249500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTCAAAAGCTTCTCCCTCTTGACATTTTTCATTTCCTATCTCTTTTCTTTCTTGGTCTTGGAGCTGGCATTAGC TGATGGAGGGTCATTACCCTCCACCATTCCACCCGAAACCATTTGCCAGTCCACCGGAGACCCTGCTTATTGTAAAAATG TTCTTGCCAATCAAAATGGCAACATCTTTGACTATGGCCGCATTTCCATTCGAAAGTCCATGTCTCAGTCCCGCAACTTC TTGAACCTAGTGGACTCATATCTTCAAGGTAGCTCATCTTTGTCTCAATCCACAGTCCGCGCCCTTGAAGATTGCAAATT CCTAGCAGACCTCAGTTCAGAATACTTATCAAACACCTACACTACAACAAATCAAGCTAGTGGTGTTCTTCCCGATTCTC AAGCGGAAGATTTCAAAACATTTCTCAGTGCCGTTTTGACTAACCAACAAACATGTTTAGATGGCCTTCAGACTACAACT TCTGATCCAAGAGTCAAGAACGACCTTTCATCGTCACTCTCTAATGACATGAAGCTTCACAGTGTCACATTGGCCTTGTA CCTTAAAGGTTGGGCGCCTCAGAAGAATATCAAAACCTCATGGCCACAAAATGGGAGACATTTGAATTTCAAAAACGGTC GCTTACCATTGAAGATGTCGGACAAAGCACGTGCTATTTTTGATTCTGCTAGAAACCATGGAAGAAAATTACTTCAAACT AGCACTGGTGACGATAGTGTTGTGGTAAATGACATAGTGGTGGTTAGTCAAGATGGGAGCGGAAACTTCACCACTATCAA TGATGCAATAGCTGCTGCACCTAATAACACAGCCGCAAATGGTGGTTACTTCTTGATTTTTATCAAACAAGGTGTGTATC AAGAGTATGTATCTATAGACAAAAAGAAGACGTACTTGATGCTAATTGGAGAAGGAATCAACCGAACAATTATAACCGGC AATCACAATGTTGATGATGGTTCCACAACATTCAACTCAGCAACATTTGCTGTAGTCGCTCCAGGGTTTGTAGGAGTTAA CATAACATTCCGCAATACAGCTGGACCAAGCAAGCACCAAGCAGTTGCAGTGAGAAGTGGAGCGGACATGTCCACCTTTT ACAGTTGCAGCTTTGAAGGATATCAAGACACATTGTATACACATTCTTTGAGGCAATTTTATAGAGAATGTGATATATAT GGTACGGTTGACTTCATATTTGGAAATGCAGCTGTAGTTTTGCAAAACTGCAACATCTATCCACGCCTTCCACTTAGCGG ACAATTCAATACCATCACAGCTCAAGGTCGAACTGACCCAAATCAAAATACAGGAACTTCAATACAAAATGCAAATATTA AGGCAGCTGATGATTTGGCTCCGAATGTTGGTACTGTGAGAACATATCTTGGGAGACCATGGAAACAGTATTCAAGGACA GTTTTCATGCAGTCCTTCATGGATAGTTTTATAAACCCCGCTGGTTGGAGTGAATGGAGTGGTGATTTTGCATTGAGTAC CTTGTACTATGCTGAATATAATAACACAGGACCTGGTTCAAACACTTCAAATAGAGTGACGTGGCCTGGTTATCATGTTA TCAATGCTACCGATGCAGCTAATTTTACTGTGTCTAACTTCTTAAGCGGGGATAGCTGGATTCCTCAAACTGGTGTTCCA TACTCAAGTGGATTGATATAG
Protein sequence (LotjaGi5g1v0249500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALKSFSLLTFFISYLFSFLVLELALADGGSLPSTIPPETICQSTGDPAYCKNVLANQNGNIFDYGRISIRKSMSQSRNF LNLVDSYLQGSSSLSQSTVRALEDCKFLADLSSEYLSNTYTTTNQASGVLPDSQAEDFKTFLSAVLTNQQTCLDGLQTTT SDPRVKNDLSSSLSNDMKLHSVTLALYLKGWAPQKNIKTSWPQNGRHLNFKNGRLPLKMSDKARAIFDSARNHGRKLLQT STGDDSVVVNDIVVVSQDGSGNFTTINDAIAAAPNNTAANGGYFLIFIKQGVYQEYVSIDKKKTYLMLIGEGINRTIITG NHNVDDGSTTFNSATFAVVAPGFVGVNITFRNTAGPSKHQAVAVRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIY GTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPNQNTGTSIQNANIKAADDLAPNVGTVRTYLGRPWKQYSRT VFMQSFMDSFINPAGWSEWSGDFALSTLYYAEYNNTGPGSNTSNRVTWPGYHVINATDAANFTVSNFLSGDSWIPQTGVP YSSGLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| TIGRFAM | 6 | 187 | 182 | 6.9E-10 | ||
| Phobius | 7 | 22 | 16 | - | – | |
| PANTHER | 11 | 565 | 555 | 6.4E-297 | – | |
| PANTHER | 11 | 565 | 555 | 6.4E-297 | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Phobius | 28 | 566 | 539 | - | – | |
| SMART | 33 | 186 | 154 | 1.4E-22 | ||
| Pfam | 39 | 186 | 148 | 1.5E-18 | ||
| Gene3D | 39 | 187 | 149 | 1.7E-9 | ||
| CDD | 40 | 186 | 147 | 6.73933E-30 | – | |
| SUPERFAMILY | 40 | 186 | 147 | 1.06E-22 | ||
| Gene3D | 246 | 565 | 320 | 1.4E-133 | ||
| SUPERFAMILY | 249 | 564 | 316 | 2.95E-113 | ||
| Pfam | 253 | 551 | 299 | 4.0E-140 | ||
| ProSitePatterns | 280 | 299 | 20 | - | ||
| ProSitePatterns | 399 | 408 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi5g1v0249500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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