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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0250400 |
| Transcript ID | LotjaGi5g1v0250400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial import inner membrane translocase subunit tim22; TAIR: AT3G62880.1 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein; Swiss-Prot: sp|Q9LZH8|OP164_ARATH Outer envelope pore protein 16-4, chloroplastic; TrEMBL-Plants: tr|I3T2W3|I3T2W3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0250400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:55891393..55893450) extracted from Lotus japonicus Gifu genome v1.2.
TATGTCAAATGACTCTCGCTACCCTCTGATACAGGGAGAAAGATGGAAGAAGACCTCAACAACGTGGTTCCATGCTCCTC CCTCGCCGTCGAGTCTAGCCTCCGCGTCGGAACGGTGAGTCACCGTTCATTCTCATTCTCCTCTGCTTCTTCATTCACCG TTGATTCTCATTCTCCTCTACTTCGTCTTCTTCTTGTTCAGGCTGGTGCAATCTGGGGCTTGTGTTATGGTCCCTATGAA GCTCGTCAACAGGGTAAAATTCTCTTATGCATCCAAACTTGTAGTGATTTCTATTCTCAGTTGTGGATTTTCATCTCTTC AAGTTCTGTATGCAGGTCTTACTGGCATTCCACGAGTTTCTTTTGTGGTACATGATTTTCCTTTTTTTCAATTTGGTAGT GTATTGAATTCAAAACTGGTGCTAGGGTTTTCTGTGAGCTGATGGTTTAGTTTGGGTTGTTGAGAATAGGCGAACACGGT CGGCAAGTTTGGGATTCGATGCGGTAATTGAACTATTGAACTCTGAATAACATGATGTGATGATGTTTGAGCTTTGTAAT GATGTTTTTCTTTGTAGAATTGATGTTAATTGATTTGGGATTTTAGGACTTGTAGCTGGAGTTTTCAGCATTACGAGATG TAGGATTCAGCAATACAGGAGGCAAGATGATTGGGTTAGTTAATCAATTCCTTCTCTTTAATCCTTTGTTTTCAACTAAT CAAGAACTTCAGTGATAGGCGTCAGAAAATTGAGGAATTCATTTTTAATGTTAGTCTGTTAGTGAGGTTTATTTGTTAGT TAGTTTACTTTGTTGTAGATGAATTGTTAGTTAGTGCTGCAGTTATTGGATGTTCCTACTTGTTTACAGTTCAGTTTAAT TTCAGAATTCAATGGAGTAGATTTGTGTTGTGATGTTCTTGTATTGTGTGCGTTGCAAGAGCAACTTAGTCGTTCTTTTA CATATTTGAGATCTTCAGTGAAGCTTAGACTTTGTTCTTTATAGATAGTTCAGGAAAATGGAATTTGTACTTCTGGTAAG ACCAATTGAATAAAGATTCTATGGGATCTGTTAGAAATATAATTATTCATGTGTCCTTTACCCAACAAATGAATAACTAT TAAGACCTATATTGAAATTGGAACTAACTAGTTAGACATCCATTGCCTGCTCAGGAGAATTGACCCCCTATATATGCATG CACCAAGAGGTGCCCAAGTATGTTCTTCTTTGCCTGTACTTTTCAATTTTGAGCTCTTGGACTGACTTGAGTATTGAATT GTGTTTATGGGCTTTCCATGGCATTGCATTTAAAATGTTGTAAACAAATACACCATTGCTTGCCCAATTTGTGTTGATTT ATCAACTTTTTTTTTTTGCATGCCTGTATGGCCATCAGAACTTGTAATTTCACTTCTATGGATTGTTTCAATATCAGAAT TTTGGTGTTTAGCTATATGTAGTTGTTTTGGGGCCAACTTTGGCATTCATTTAGAAACCTGGAATACCTTTTTTTTTGTT TTGAAGACCAAGCATGTTTATTAGAACAATCGTGTGTGCTAGATTTATGTATTTACGTGGTTGCATATTTATGCATTTGA CATGGACAAAAAAAATGGATCAACGAGTTGCTAAAATTACTTGCAAAATAAACTCCCAAACAGGTCAATGGTCTGATTGC GGGAGCTGTGGCAGGTGCATCTGTTGCTGTTGCTGCCGGGACACGGAAATGGACGCAGGTGATTGGAATGACAGGTTTTG TTTCTGCTTTTTGTGCTGCAGCTGACTACTCCAGAACATCTTAAAATGACATGAGAAACCGTGGGCAGAGATATTTGATC CAGGTTTCTTGGAAGACATCAACAAGCAAAATTCTTTGCTATTTGGTAGTTTTCAAAGATTGTATTTTTTTTTTGTTATT TATGTGTTTAGAATAATTTAGTCTTGGTTGAGGTTCTCTTTATACATGATAACACTAAACAAGACAAAAATACTATGTAA AATGCACACACATCATGGTCTTACAACCACATTGTACATTTCCTTATGACTTCAATTA
CDS sequence (LotjaGi5g1v0250400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGAAGACCTCAACAACGTGGTTCCATGCTCCTCCCTCGCCGTCGAGTCTAGCCTCCGCGTCGGAACGGTGAGTCA CCGTTCATTCTCATTCTCCTCTGCTTCTTCATTCACCGTTGATTCTCATTCTCCTCTACTTCGTCTTCTTCTTGTTCAGG CTGGTGCAATCTGGGGCTTGTGTTATGGTCCCTATGAAGCTCGTCAACAGGGTCTTACTGGCATTCCACGAGTTTCTTTT GTGGCGAACACGGTCGGCAAGTTTGGGATTCGATGCGGACTTGTAGCTGGAGTTTTCAGCATTACGAGATGTAGGATTCA GCAATACAGGAGGCAAGATGATTGGGTCAATGGTCTGATTGCGGGAGCTGTGGCAGGTGCATCTGTTGCTGTTGCTGCCG GGACACGGAAATGGACGCAGGTGATTGGAATGACAGGTTTTGTTTCTGCTTTTTGTGCTGCAGCTGACTACTCCAGAACA TCTTAA
Protein sequence (LotjaGi5g1v0250400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEEDLNNVVPCSSLAVESSLRVGTVSHRSFSFSSASSFTVDSHSPLLRLLLVQAGAIWGLCYGPYEARQQGLTGIPRVSF VANTVGKFGIRCGLVAGVFSITRCRIQQYRRQDDWVNGLIAGAVAGASVAVAAGTRKWTQVIGMTGFVSAFCAAADYSRT S
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 24 | 24 | 2.2E-59 | ||
| Phobius | 1 | 45 | 45 | - | – | |
| PANTHER | 1 | 24 | 24 | 2.2E-59 | – | |
| PANTHER | 36 | 160 | 125 | 2.2E-59 | ||
| PANTHER | 36 | 160 | 125 | 2.2E-59 | – | |
| Phobius | 46 | 65 | 20 | - | – | |
| Pfam | 54 | 148 | 95 | 2.3E-11 | – | |
| Phobius | 66 | 114 | 49 | - | – | |
| TMHMM | 115 | 134 | 20 | - | – | |
| Phobius | 115 | 135 | 21 | - | – | |
| Phobius | 136 | 140 | 5 | - | – | |
| TMHMM | 138 | 155 | 18 | - | – | |
| Phobius | 141 | 158 | 18 | - | – | |
| Phobius | 159 | 161 | 3 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | TIM22 mitochondrial import inner membrane insertion complex | A multi-subunit complex embedded in the mitochondrial inner membrane that mediates the inner membrane insertion of multi-transmembrane spanning proteins that contain internal targeting elements. In yeast cells, TIM22 is a 300-kDa complex, consisting of four membrane integral subunits, Tim22, Tim54, Tim18 and Sdh3, and a peripheral chaperone complex consisting of the small TIM proteins, Tim9-Tim10-Tim12. | ||
| Biological process | Protein import into mitochondrial inner membrane | The process comprising the import of proteins into the mitochondrion from outside the organelle and their insertion into the mitochondrial inner membrane. The translocase of the outer membrane complex mediates the passage of these proteins across the outer membrane, after which they are guided by either of two inner membrane translocase complexes into their final destination in the inner membrane. |
Expression pattern of LotjaGi5g1v0250400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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