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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0251800 |
| Transcript ID | LotjaGi5g1v0251800.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G68930.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930; TrEMBL-Plants: tr|G7LG72|G7LG72_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi5g1v0251800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56007648..56011444) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAACATGAACTGATAACACACCCCAACACTAAAACACCTTCCCCAGCCAAACAGAAGAAAATGAACCCTTGTTCTAC TAATCACTACTGTGCATTGCTCAAACTTTGCTGTGAAACCCGCAACCTCACTCGCACAAAGCAGCTCCATTGCCTCATAA TTACGTCCATTCCAAACCCAGAAACCATTCTCTTAAACAACCTCATCAGTGCTTATGGCAAGCTCACCAGCATCACCTAT GCCCGCAAGGTGTTCGACCAAATGCCTCACCCAAATCTCTACTCTTGGAACACCATTCTCTCCGCCTACTCCAAGCTGGG TCGTCTTCATGAGATGGAGCAAGTGTTTAATGCAATGCCAGCCCGTGATGGGGTGTCGTGGAACTCGCTTATTTCAGGCT ATGCTGGTTCTGGCTCCCTTGTTCAGTCTGTCAAGGCTTATAATTTGATGTTGAAAGAAGCGTCGTTCAATTTGAATCGG ATTACGTTCTCGACGATGGTTATACTTGCATCCAAACAGGGTTGTGTTCATTTGGGAAGGCAGATTCATGGGCAGGTGGT GAAATTTGGTTTCCTGTCGTATGTTTTTGTTGGAAGTCCTTTGGTGGATATGTATTCGGAAATGGGACTCATATCTTGTG CTAGGCAGGCTTTTGATGAGCTGCCTGAGAAGAATGTGGTTATGTATAATACACTGATCAAGGGGCTGATGCGATGTGGT AAGGTTGAAGATTCTAGGCAATTGTTTTGTGATATGCGAGAAAGGGATTCAATTTCTTGGACATCCATGATTTCGGGATA TACTCAGAATGGATTGCATAGAGAAGCGATTGATTTGTTCAGAGAGATGAGATCGGAAATGCTAGAAATGGATCAGTACA CATTTGGAAGTATGTTAACTGCCTGTGGTGGTGTTACGGCTTTGCAAGAAGGCAAGCAAGTTCATGCTTACATAATTAAG ACTGGTTATAAGGATAATATATATGTTGGTAGTGCTCTTGTTGACATGTATTGCAAGTGTAGAAGTGTGAAATCAGCAGA AGCAGTTTTCAAGGAGATGAGTAACAAGAATGTTGTCTCTTGGACTGCCATGTTAGTGGGTTATGGACAAAATGGTTATA GTGAAGAAGCTGTTAAAATCTTCTGTGATATGCAGAAGTATGGGATTGAGCCAGATGATTTCACCCTTGGAAGCGTTATT AGCTCATGTGGAAACCTTGCAAGCCTAGAAGAGGGTGCCCAATTTCATGGCATAGCTCTGGTTTCTGGCCTGATATCTTT CGTTACCGTTTCAAACGCTCTGGTTACATTATATGGTAAATGTGGAAGCATTGAAGACTGCCATAGACTATTTAGTGAAA TTACCTTCAAGGATGAAGTCTCATGGACTGCTCTTGTGTCTGCATACTCTCAGTTTGGTAAAGCCAATGAGACAATCAGG TTATTTGAAAGCATGCTAACCCATGGTTTAAAACCTGACAAGGTTACTTTTATTGGGGTTCTTTCAGCTTGCAGTAGGGC AGGGTTAGTGGAAAAAGGAAATCAGATATTTGAATCGATGACTAAGGAACACGGAATTATACCAATTCAGGATCATTACT CCTGCATGATTGACCTCTTTAGTCGAGCTGGGAGGTTAGAAGAAGCAAGGGATTTTATAAATAAGATGCCTTTCCGTCCT GATGCAATTGGTTGGGCAACATTGTTAAGTTCATGTAGATTCTATAAGAACATGGAGATTGGCAAGTGGGCAGCTGAGTT TCTTCTAGAATTAGAACCACAAAATACTGCTAGCTACATCTTACTTTCAAGTATCTACGCAACTAAAGGAGAACAGGAAG AAGTCGCCAAATTAAGAAGAAGGATGAGAGACAAGGGTCTGAGAAAAGAACCGGGATGTAGCTGGATCAAATATAAGAAC GAAGTGCACATTTTCTCTGCTGATGACCAGTCAAGCCCATTTTCAAAGCAGATATATTCTGAGCTTGAAAGGTTGAACTA CAAAATGATTCAAGAGGGATATGTTCCTGATATCAATTCTGTTCTGCATGCTGTTGAGGATTCAGAGAAAATAAAGATGC TCAATCACCATAGTGAAAAACTTGCAATTGCTTTTGGGTTGTTATTTATACCTCCTAGTCTTCCCATACGAATATTTAAA AATCTGAGGGTTTGTGGGGATTGCCACAATGCTACTAAATACATATCGAAGGTCACCAAGAGGGAGATTCTTGTAAGAGA TGCTGTGCGGTTCCACTTGTTTAAGGATGGAATGTGTTCATGTGGGGACTTTTGGTGACAGGTCAATACTAACAACATAA TATTCTTTTATTTTATGTAGTGAATTTATTCCTATCCATAATATATACAAAAGAGAAGAAATTATGAGAACTTATTTCCA AACGTGTCCTCATCATGTTCAACCAATCCAAAGTGGCAAAATTTTCTTCAATCCTTCCTTCCTTGCGTTCCATTTGATTG CTCTGTTCTTCAAGTTACCACTTTCACACATGTAAAATATCATTATTTTTCTACTGATTCACTAGAAAACTTACTATGGA TGTGTAACTCTTTGCTCATGTCAGAATTTTCCTAATCATGATATATATGATTCTTACCAGGTTAAATTGGCTAACATGTC ACATTCTCAAGCTTTTGTCTTATGTGTCTTTTCTTCATGAGTTTGGCGTAGGTGTTGCAACCTCAACAATACTTCCCTCA AACAGTACCAAAGCATACTATTGGCTGAAGAGATATCAATAATGCAACTCGACTCCAACTGATCAGAAGCAATCCATGGT TTCTTGCTGCACATGACTTCCCACTCACGTTTTCTGGCAGCAATGAACACAAGGATGTGCTACTAATTTTCAAATTTGAA ATTCAAATTTTCTGGCTCCCCTTCCCACCCATCTTCCAGAGGTCTGTCTTAAAAGAAGTCAGTGTTTCAGGAAAGTGCAT CATCTTTACAGGGCTCCTCCTCCTTCTTCAATGGAGCACATCATTTGGCTGCAAAATCTTCAAGCCCAAGCTCATTTTTG TGCAGCACCCACTTCTTCAATCTCATTTGATCAATGAATCAATGCATTCTTCCTTCTTCATCATGCAGACCTTCAAGACG CAGTCTCCAACCGTCGTGCATCTTCCTTCCGCCTCCAAATTAAACCAAGCAAACCCAAAGCCGTTTTCAAACCCTAACCA CCGCTTAACTTGGGTTCAAGGTTTACTCACCTCTTCTTTAGTGGTTGTTGGCATAACTTAGTTTCTGTTCTTCATCTCAC GGTATCTATATTGGTTCATTTCTCCATTTTTCTTATACTGTGATGTTATAAATATTGGTAGTGATTTATCCGTTGATAAG CTTTAGTAAGGAAAGAAGAGGTGGCTTGTCGTAGCTAATGGAGCTGATGATTTTGAAGTTTTAAGGATTTTTCATTGTAG AATCCAACCCATGGGTAGTGGCTTGCCAGGCTTGGCAATGGAGAGAAGAAGAGTAAAGGAAGAATGAGAAAGGAGTGAAG GTAAAACCGACAACTGAAGCTAAGTTTATTTTCCACTTTGCTAAGTTAATTAAGCTTATGAAACCAAGTTGGAAACCTCA GGCAAACTGCTTTTGTTGAGATGTTTCTTAACATGTGTGATATCTCCATATGGATTTAATCGGAAGGGATCCTAAATTTC ACTCTCCCAAAGAGATACATCTAATAATGAAACTATAGGACTGTTAACGTCACTCTGGAAAAATGTTTCTTTTTTCACTT TTAACCATCAACCAACAGATGTAGGATTCCATTTCCA
CDS sequence (LotjaGi5g1v0251800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCTTGTTCTACTAATCACTACTGTGCATTGCTCAAACTTTGCTGTGAAACCCGCAACCTCACTCGCACAAAGCA GCTCCATTGCCTCATAATTACGTCCATTCCAAACCCAGAAACCATTCTCTTAAACAACCTCATCAGTGCTTATGGCAAGC TCACCAGCATCACCTATGCCCGCAAGGTGTTCGACCAAATGCCTCACCCAAATCTCTACTCTTGGAACACCATTCTCTCC GCCTACTCCAAGCTGGGTCGTCTTCATGAGATGGAGCAAGTGTTTAATGCAATGCCAGCCCGTGATGGGGTGTCGTGGAA CTCGCTTATTTCAGGCTATGCTGGTTCTGGCTCCCTTGTTCAGTCTGTCAAGGCTTATAATTTGATGTTGAAAGAAGCGT CGTTCAATTTGAATCGGATTACGTTCTCGACGATGGTTATACTTGCATCCAAACAGGGTTGTGTTCATTTGGGAAGGCAG ATTCATGGGCAGGTGGTGAAATTTGGTTTCCTGTCGTATGTTTTTGTTGGAAGTCCTTTGGTGGATATGTATTCGGAAAT GGGACTCATATCTTGTGCTAGGCAGGCTTTTGATGAGCTGCCTGAGAAGAATGTGGTTATGTATAATACACTGATCAAGG GGCTGATGCGATGTGGTAAGGTTGAAGATTCTAGGCAATTGTTTTGTGATATGCGAGAAAGGGATTCAATTTCTTGGACA TCCATGATTTCGGGATATACTCAGAATGGATTGCATAGAGAAGCGATTGATTTGTTCAGAGAGATGAGATCGGAAATGCT AGAAATGGATCAGTACACATTTGGAAGTATGTTAACTGCCTGTGGTGGTGTTACGGCTTTGCAAGAAGGCAAGCAAGTTC ATGCTTACATAATTAAGACTGGTTATAAGGATAATATATATGTTGGTAGTGCTCTTGTTGACATGTATTGCAAGTGTAGA AGTGTGAAATCAGCAGAAGCAGTTTTCAAGGAGATGAGTAACAAGAATGTTGTCTCTTGGACTGCCATGTTAGTGGGTTA TGGACAAAATGGTTATAGTGAAGAAGCTGTTAAAATCTTCTGTGATATGCAGAAGTATGGGATTGAGCCAGATGATTTCA CCCTTGGAAGCGTTATTAGCTCATGTGGAAACCTTGCAAGCCTAGAAGAGGGTGCCCAATTTCATGGCATAGCTCTGGTT TCTGGCCTGATATCTTTCGTTACCGTTTCAAACGCTCTGGTTACATTATATGGTAAATGTGGAAGCATTGAAGACTGCCA TAGACTATTTAGTGAAATTACCTTCAAGGATGAAGTCTCATGGACTGCTCTTGTGTCTGCATACTCTCAGTTTGGTAAAG CCAATGAGACAATCAGGTTATTTGAAAGCATGCTAACCCATGGTTTAAAACCTGACAAGGTTACTTTTATTGGGGTTCTT TCAGCTTGCAGTAGGGCAGGGTTAGTGGAAAAAGGAAATCAGATATTTGAATCGATGACTAAGGAACACGGAATTATACC AATTCAGGATCATTACTCCTGCATGATTGACCTCTTTAGTCGAGCTGGGAGGTTAGAAGAAGCAAGGGATTTTATAAATA AGATGCCTTTCCGTCCTGATGCAATTGGTTGGGCAACATTGTTAAGTTCATGTAGATTCTATAAGAACATGGAGATTGGC AAGTGGGCAGCTGAGTTTCTTCTAGAATTAGAACCACAAAATACTGCTAGCTACATCTTACTTTCAAGTATCTACGCAAC TAAAGGAGAACAGGAAGAAGTCGCCAAATTAAGAAGAAGGATGAGAGACAAGGGTCTGAGAAAAGAACCGGGATGTAGCT GGATCAAATATAAGAACGAAGTGCACATTTTCTCTGCTGATGACCAGTCAAGCCCATTTTCAAAGCAGATATATTCTGAG CTTGAAAGGTTGAACTACAAAATGATTCAAGAGGGATATGTTCCTGATATCAATTCTGTTCTGCATGCTGTTGAGGATTC AGAGAAAATAAAGATGCTCAATCACCATAGTGAAAAACTTGCAATTGCTTTTGGGTTGTTATTTATACCTCCTAGTCTTC CCATACGAATATTTAAAAATCTGAGGGTTTGTGGGGATTGCCACAATGCTACTAAATACATATCGAAGGTCACCAAGAGG GAGATTCTTGTAAGAGATGCTGTGCGGTTCCACTTGTTTAAGGATGGAATGTGTTCATGTGGGGACTTTTGGTGA
Protein sequence (LotjaGi5g1v0251800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPCSTNHYCALLKLCCETRNLTRTKQLHCLIITSIPNPETILLNNLISAYGKLTSITYARKVFDQMPHPNLYSWNTILS AYSKLGRLHEMEQVFNAMPARDGVSWNSLISGYAGSGSLVQSVKAYNLMLKEASFNLNRITFSTMVILASKQGCVHLGRQ IHGQVVKFGFLSYVFVGSPLVDMYSEMGLISCARQAFDELPEKNVVMYNTLIKGLMRCGKVEDSRQLFCDMRERDSISWT SMISGYTQNGLHREAIDLFREMRSEMLEMDQYTFGSMLTACGGVTALQEGKQVHAYIIKTGYKDNIYVGSALVDMYCKCR SVKSAEAVFKEMSNKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQKYGIEPDDFTLGSVISSCGNLASLEEGAQFHGIALV SGLISFVTVSNALVTLYGKCGSIEDCHRLFSEITFKDEVSWTALVSAYSQFGKANETIRLFESMLTHGLKPDKVTFIGVL SACSRAGLVEKGNQIFESMTKEHGIIPIQDHYSCMIDLFSRAGRLEEARDFINKMPFRPDAIGWATLLSSCRFYKNMEIG KWAAEFLLELEPQNTASYILLSSIYATKGEQEEVAKLRRRMRDKGLRKEPGCSWIKYKNEVHIFSADDQSSPFSKQIYSE LERLNYKMIQEGYVPDINSVLHAVEDSEKIKMLNHHSEKLAIAFGLLFIPPSLPIRIFKNLRVCGDCHNATKYISKVTKR EILVRDAVRFHLFKDGMCSCGDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 5 | 39 | 35 | 5.536 | ||
| PANTHER | 10 | 98 | 89 | 1.7E-124 | – | |
| Gene3D | 24 | 173 | 150 | 6.5E-24 | ||
| ProSiteProfiles | 40 | 70 | 31 | 6.259 | ||
| Pfam | 45 | 67 | 23 | 0.89 | ||
| ProSiteProfiles | 71 | 105 | 35 | 10.26 | ||
| TIGRFAM | 73 | 101 | 29 | 3.4E-6 | ||
| Pfam | 73 | 100 | 28 | 2.1E-5 | ||
| PANTHER | 80 | 161 | 82 | 1.7E-124 | – | |
| Pfam | 104 | 131 | 28 | 0.0046 | ||
| TIGRFAM | 104 | 132 | 29 | 0.0024 | ||
| PANTHER | 105 | 231 | 127 | 1.7E-124 | – | |
| ProSiteProfiles | 106 | 132 | 27 | 5.207 | ||
| ProSiteProfiles | 138 | 172 | 35 | 6.61 | ||
| Gene3D | 174 | 284 | 111 | 1.2E-27 | ||
| Pfam | 203 | 234 | 32 | 9.2E-8 | ||
| ProSiteProfiles | 204 | 234 | 31 | 10.972 | ||
| TIGRFAM | 206 | 235 | 30 | 3.4E-7 | ||
| PANTHER | 216 | 292 | 77 | 1.7E-124 | – | |
| ProSiteProfiles | 235 | 269 | 35 | 11.488 | ||
| Pfam | 235 | 281 | 47 | 1.4E-11 | ||
| TIGRFAM | 237 | 265 | 29 | 5.5E-7 | ||
| ProSiteProfiles | 270 | 304 | 35 | 6.884 | ||
| Gene3D | 285 | 391 | 107 | 5.7E-24 | ||
| PANTHER | 287 | 395 | 109 | 1.7E-124 | – | |
| ProSiteProfiles | 305 | 335 | 31 | 8.342 | ||
| TIGRFAM | 311 | 338 | 28 | 6.3E-4 | ||
| Pfam | 335 | 382 | 48 | 1.6E-13 | ||
| ProSiteProfiles | 336 | 370 | 35 | 12.441 | ||
| TIGRFAM | 338 | 371 | 34 | 8.0E-9 | ||
| ProSiteProfiles | 371 | 405 | 35 | 5.996 | ||
| PANTHER | 390 | 602 | 213 | 1.7E-124 | – | |
| Gene3D | 392 | 631 | 240 | 1.1E-35 | ||
| ProSiteProfiles | 406 | 436 | 31 | 5.81 | ||
| Pfam | 411 | 433 | 23 | 0.27 | ||
| Pfam | 436 | 484 | 49 | 7.1E-9 | ||
| ProSiteProfiles | 437 | 471 | 35 | 12.134 | ||
| TIGRFAM | 439 | 472 | 34 | 3.0E-5 | ||
| ProSiteProfiles | 472 | 507 | 36 | 9.153 | ||
| TIGRFAM | 474 | 507 | 34 | 7.3E-4 | ||
| ProSiteProfiles | 508 | 538 | 31 | 7.64 | ||
| Pfam | 511 | 535 | 25 | 2.0E-4 | ||
| TIGRFAM | 512 | 535 | 24 | 2.2E-4 | ||
| ProSiteProfiles | 574 | 608 | 35 | 8.495 | ||
| Pfam | 610 | 734 | 125 | 5.3E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0251800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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