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LotjaGi5g1v0252400.1

Overview

Field Value
Gene ID LotjaGi5g1v0252400
Transcript ID LotjaGi5g1v0252400.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger protein; TAIR: AT2G02070.1 indeterminate(ID)-domain 5; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|A0A103Y7K5|A0A103Y7K5_CYNCS Actin-binding FH2; Found in the gene: LotjaGi5g1v0252400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:56123564..56124025) extracted from Lotus japonicus Gifu genome v1.2.

ACAGATCCAAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAG CAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAAGCAGAGAACAA GCAGTGAGGTGGTGAAGAAACGAGTGTATGTGTGCCCTGAGCCATCATGTGTTCACCACAACCCTGCTCGTGCATTAGGA GACCTCACTGGCATTAAAAAACACTACAGCAGAAAACATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCCAAAAGATA TGCTGTCCAATCTGATTGGAAGGCCCACCAGAAAACATGTGGCACCAAGGAATACAAATGTGATTGTGGCACCATTTTTT CCAGGTATAGATTAAAGATTTAAGACCAACTTAAAGCAATGTTAGTGATGTTTTGGCATTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0252400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACAAATAGATTCGTCTGTGAGATCTGCAGCAAAGGGTTTCAGAGGGACCAAAACCTTCAGTTGCACCGCAGAGG TCACAATCTTCCATGGAAACTGAAGCAGAGAACAAGCAGTGAGGTGGTGAAGAAACGAGTGTATGTGTGCCCTGAGCCAT CATGTGTTCACCACAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATTAAAAAACACTACAGCAGAAAACATGGTGAG AAGAAATGGAAATGTGACAAGTGCTCCAAAAGATATGCTGTCCAATCTGATTGGAAGGCCCACCAGAAAACATGTGGCAC CAAGGAATACAAATGTGATTGTGGCACCATTTTTTCCAGGTATAGATTAAAGATTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0252400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATNRFVCEICSKGFQRDQNLQLHRRGHNLPWKLKQRTSSEVVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGE KKWKCDKCSKRYAVQSDWKAHQKTCGTKEYKCDCGTIFSRYRLKI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10593:SF120
1 120 120 5.8E-97 –
PANTHER
PTHR10593
1 120 120 5.8E-97 –
Gene3D
G3DSA:3.30.160.60
2 29 28 4.2E-6 –
SUPERFAMILY
SSF57667
5 104 100 3.8E-9
IPR036236
ProSiteProfiles
PS50157
6 28 23 10.887
IPR013087
Pfam
PF12171
6 28 23 8.5E-5
IPR022755
SMART
SM00355
6 28 23 0.036
IPR013087
ProSitePatterns
PS00028
8 28 21 -
IPR013087
Gene3D
G3DSA:3.30.160.60
40 124 85 2.3E-7 –
SMART
SM00355
48 78 31 75.0
IPR013087
SMART
SM00355
83 103 21 89.0
IPR013087
Pfam
PF00096
84 104 21 0.011
IPR013087

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0252400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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