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LotjaGi5g1v0254400.1

Overview

Field Value
Gene ID LotjaGi5g1v0254400
Transcript ID LotjaGi5g1v0254400.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|K7N4G3|K7N4G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0254400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:56342482..56348407) extracted from Lotus japonicus Gifu genome v1.2.

CACCAAGCTGCTTGATTTCCTTGGACTCAAACTCTCAAACCGCATGGACTACTTGCCAACCTCACCTCCTTGTCTCATTC CCTTCACATCACAAAGCTTCTAAGTTTGCTAAGTTTCTTCTCTCCAACCCTCTCTTCCCATTTGTTTCTGAATCTTTGAC CCTTTTTTTGTTGAAAGAGAGAGATCATCATTCAGGCACGGTTTGAAAGGTGAAAAATTAAGGAAACATGGGTTCTGGTT CAAAAGTTGGGAATAGCAACTATGATTACTCCTTTAAGATTTTGCTGACTGGTGATTCTGGTGTTGGAAAGAGTAGTCTT CTCCTCAGCTTCATATCCAACTCTAACTCTCTTTATGATCTTTCCCCCACAATTGGTTCGTTTCTTTTCTTCCTTGTCTT TTTTTTTTTGCTTCTCTGTTTTTATTCTCAATTGTGACATTTAGAGCTTTTAGAGAATTTGAATTTGTTGATTGGGAGAA TATATCATTGTGCTACTAGGTACAGATATGACTAGCTCCCTAAACGACGAAACTTGCACGGGATGAATACAACATTTTTT TGATACTAATTGGATATATTCATGGTTTTCAGTTTTATGGTTTGAAAATTTTAAAAAACAAAATTGGTTTTCAATTTTAT AAATACAGTTTTAGTTTTTTTTTATTGTTTCTCACTTTTAGAAATACCAACTTTGTAATTCACGATTGTGAGAAATTTTC TACCAACATCACCGCCACTTGGTAATTTAGTATGGTATAGCGTGCATAGGGTGGTATGCTGGTGAAGGGTGTTGGGTGGT TGTGAGTGCGCAAGGGTGGTGGCGGTAGTGGTAAAGTGTACTAAATGGTGGTGACCGTGACAACAGAGACTATTAGGTGA TGAAGGCTGCGTAGTGGTGGCAATGATCGGTATGGGTGGCGGATGGAAAGGGAAAATAATGCAGCATTTTGGTATCTAAT GCAAAAGGATATAAGCTGAATATGACCAACTACAACTTTTTTGGTGTCCAATAAGCTGAATACTCATTGAAATTTGCCAA ATCATCCCATATATTTTTTGGGGAAATTTTATCAAGATTCATTTTCAGTGTCCTATTTGAAACTTTAATTTATTGATCCA TTACATGCTGTGAAATTGTGTTTGTCTAATAATGAGGTTATATCTGGGTCTTGGACATTCTTTCTGTGTTGCCTTTGGAG ATTTTCTTCCTTTATGATCTTTCAATACATACTGAGTTGTTCGTATTCTTAAATTATTTACAGGAGTTGATTTCAAGATG AAACTTATTACAATTAGTGGTAAAAGATTGAAGCTTACAATTTGGGACACAGGTAGTTGTTTTTCTAGTTATTTGATCGC ATTTTTCATTTATCTTTTTGTGAAGAAATTTATCATAGATATATAATTTCCCTTATCTAATACAATCTTTGTTCATCTGT GAAAATTGTTGTAATATAACTGCTTTATTGTCTTTATCATTTAGAAACTATTATTTCTAGTAGAACTTTGAAGTAATATT TCTAAGATGTCATTTGCCTTTACTGAGGAAAGGATAGGGTGATGTTAGTGCAGCATTTGTTCCTTATCAAATAGATATCT TGGAATGGGAAAAAATGAAAAGAATTTGAATATGACTGTGGGAGGTGTTGAGAAGTCTCACATTGACTAGTAATATGGCC TAAATAGTCCTTAGACAGGGTAGAGCAATCCTCTCACCTGAGCTAAGGCCTAACCCGATTCTAATAGGAGCAGGGACGGA TTCAAGTGGAGAGGCATGAGGGCAAATGCCCTCACTTGAATTTGGTATAATACATTAGAAAAAAATTTGAGTAGTAAAAG TGTGCGGTTTTTTATGATTTCTTTGATAAAAACTGCCCTCACTTAATTTGAATAGTAAAAGTATGTGATTTTTATTGACT CATTTGATAAAAATTGTCCTCACTTATGTCCCACATTGCTTAAAGTTGAAACTTTTGTACTTAGAGTATTTTTTTATTTG GTGTTTCTTGAATCTTGACTAATGCCCATCAGATATTAGTATTACTATTACACCATTCTTTCACTCATTTCTTTTGTCCA ATGGTTATACCATGGCTCACAAAATATCCCCAAATCCTCAACTTTTCTCCTTCTTTCATTCAACACTCGACAGCATACAA CAAAGTAGAGAAAGAAGGAACCGTAACATGCAATATATGAAAACTCGTAGGGAACAATTATGATGTGCTTTAAAACTTCT AATAGTATATGTTAATTTTTTTGTGACGTATTTATATGTATATACTGCCCTCACTAGATTAAATTCCTGGATCCGTCACT GAATAGGAGGATCAATAATTCCTTCTACTGCTTGATGGAACTGAAAAAATTAGATGGAATCCTACTTTTATTACCACAAT TTGGTAATGAATTCTATCATTAGTAATGATACAAGGAGTAAAATCTAACACCATTGGAATTATGTCTTATTACTAAATAA ACTCTTCAAATGGTTCTTTCTCTTCTTTCTATTATTTGGATTGTTCAATGATGATTGAAGCAAATAAATAATCTTGCTTC ATAGGTCCACAACCATAATTATATTGTTTGGATTTGAATATTAACTTTTTCTTTAAACTCACTGGAACTGTGCTCTAAGA TTGATGCAACCTAGTGATTACTGATAAGCAGTGATAAGAAGTCATTAGCCTCTTATAATAACAAATTTTATAGGTCAGAG CCTGTTCTTTGTCTGATCTCCCTTCCCTCAGGTAAAGAAGCTTTGAAGCTAAATTTCGTGATGCAAATTTTAATCTCTCA ATATGGATTATTTTCAAGCCTCAAGTATAGGCGCGCTATAGCTTGATTGTAGGGTAACATGAAAGTTACTGAAAGTTCAG ACCTGTGGGCACATGATCAAAAGATTTTGGGGTCTGCACTCAATCACATAAAGGAAAAATTAAAAAGAAAATGAAAAGAT TAACTAATGACCACAGAAGTATAATGTCTATCAGCTCTATGTCAAAGGGGTGGGGATGGTGAAGAAATTCCACTGGGAAA ATCCAAAATAGAGACTACTGATGGATTCATTAATCTCATATGGCTGAGACTATAAGAATTTAAAACTCTTTTATTCTCGA AGTATTACGTTAACTTCAACATGTTCCGTCAAAACTCAGTAAGACTATTAAATTCATATGTTTCTATGGCATTCATAGTC ACCAAATGAAGCTTGCAGTAAAGTGAAATTGGGCAACACTGAATCAACTTGAGGCTTTCATTGGCCATGTTGAATTCTAC AACTACAATGTTACTTATTCAATCAGATTGCTTCTTCCACTGATCAGTGAATAACTACTTTTAATGATGGTTTTGGGATT ATGTTCTCATATGTGGTACTGTTTACTATTGCCTAATAGGATATGCTTATCTCTGTGATTGCACTAGTTCAGCAATGATG AATAGAGATGATTTTTCTCCACTAGTAACTGTCAACATAGGCTATTTTGTAACTGTGCTTCAAATTACTACACACACATT TATGCATAAGACTATGGAGAAAAAATTTAGATAACTTAGTATGGACTAGCACATGCGCGCACTCTTGTCCCTGCATTCAC CAGTTAGTCTTGGTGCATTAACCTTAACTAAAATTCATTTGATCAACCAAACCATTGGATTCTGTTTATATGAAACCTCG CGGTGGTGACTTATTGTCGTTGGATTATAACATTTAGTTCTTCTGGCAGCTGGACAAGAGAGGTTTGGAACAGTAATAAG CTCTTATTACAGAGGTGCACATGGGATCATTCTCGGTATGCTCTCTCTCTCTCTGCCCCTCTGTGCGTGCACACGCGCAT ATGTTTTAAAAAATTGAATTTTTTCTTTTACATTCTTAGATATATGGCACTTAAAGATTTACTTTTGTCAAGTCTATATT TACAATGGCACATTCGAATATGAGACACATTCACCCCCCTCCGTATTGTTCTTCCCACAAGTCACATGCCCTTGAAAATA AGCATGTATAGGCTCTTTCATGAACTATCCCCCCTCTGTACTGTAAGCTTTGCACCCTGCTCTTATTCTTACTGTAATGC TTGAATGTACTAATATTCCCTCGAAGGAACCATTTGACATAAACTTCCACGATAAACCTCTCTATGTAGCTTGTACCCCA CGCCACCCATCTTTGTTATATGTTTCACTACTTGTTCAGGTAGATTAGGACTTTAAATACTTGACACTCCTACACTTGCA AATCTTTCTTTCTGTTCCTGATTCATGCTCTAGCTTGGAATCACTAATGCCAATGTGAATTTGAGTGTATCTATTATATG ATCAATGCTGCTGCAAAGGTAAGAAATCCTGTCACTGTCACAGTTTGTGTCCTGATGGTTGTAACCACATATTTTTGTGC TGCTTTGCTGAATAAAGCATGTTCCATAAATTATTGAGAGTTTATGGTATGAAAATGGATTTTACCGCAACGAGTTTAGT GTTTACTGTTCAAAGAGCTAGAGGGAGAAAAAAACAAGTGCTCAGAATAGTAATATGCTTTGCTTAATGGTTTTCTATCC TCTTTATCATTTTGTTAAGTTCTTTAAAGGAGTAATATGCTTGCACCAATGTGGTGCTCACTGTTCATGCATTTAAGTAT TGCCTTTAGTGTGTACATCTAACAGCTTTTTCTTCAATTTTCTAATAGTCTATGATGTGACACGACGCGAGACATTTACA AACGTTGTGGAAATATGGGCAAAAGAGGTTGATCTGTACTCCACTAATCATGATTGCATCAAAATTCTTGTTGGCAATAA GGTGGATAAGGTAAGTTTTACAGTGAATAATCTTGTAGTCCTTTCCTTGATCAGGAAAAGGCAGAAACAATACAAATTTA CCTGACAATTTAAATTGTAATTCAAATATATATATTACTTAATATTATCTTGCGGATTGTGAAGAATGTCTATTGTATAT ATTATTTTTCAGGAAAGTGAAAGAGCTGTAACCAAAGAAGAGGGTATGGCTCTTGCAAAAGAGCATAGATGCTTATTCCT AGAGTGTAGTGCCAAAACTAGAGAAAATGTTCAACAATGCTTTAATGATCTCACATTAAAGGTATTGTTATTTGAATACA TGCTAGAAAGATCCTAGTACATGGTCATACTTGGCATCATCTACACCATAATTGAAAATTTGGCTAATTGACTTGAAGAT AGACCTCTAAATCAAATTTTGCATGCACATTGATATGACTACTTTTATTTAAGTGAAAGCTCCTTTCTGGTATTTGAGTT AAAACTTCCACACTTCTATGATAAGAACCTGGCTTTGCATTGAAGTTTTGTCCTTAAGTTCCTCTCACAATCTCCAACCA GCATCCTCCTCTGCTCTCCATCTGATAAATTCTCTTGTTCTTTACAGATACTAGAGGTGCCGAGTTTGCGGGAAAAGGGT TCTGTTGTAGTAAAGAGACAAAAGCAAAAGCACTTGTATGAGACACCTCAAAGCGGAGGTTGCTGTTCTTAGTAAATTTG CTTCAACATGAATGTGCAATAGGTTTTACATCAAGAGTCAGATAATTTGGAATTGGATGATCATGTGCTCCAATGTTCAG TACAGTCTTTTTTATTGCTTTCACAAGAAGATGCTTGAGATGGATATCTTAACATCTGTTGGAGCCATAGCATGACTCAG TTTATGGTAGTCAAGTTTATCACAGAACTATTAATATACTAGCCTTTTTCTTACTTACGTTACAGTTTTAGAAACACCTG TACTCTGCATATGTAAAATGTAAATATATCTACAGTTTCTATGTATTAGGGTTGGTTTGAGATTCGGTTAGGTTGGGATA TTCAGCAAAATACATTTATTATTTATTATTTTCTCCCCTTCTAAGCATGAATGATACTGTCAAAAGAAAAGCTTGAATGA GAAAAG
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0254400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTCTGGTTCAAAAGTTGGGAATAGCAACTATGATTACTCCTTTAAGATTTTGCTGACTGGTGATTCTGGTGTTGG AAAGAGTAGTCTTCTCCTCAGCTTCATATCCAACTCTAACTCTCTTTATGATCTTTCCCCCACAATTGGAGTTGATTTCA AGATGAAACTTATTACAATTAGTGGTAAAAGATTGAAGCTTACAATTTGGGACACAGCTGGACAAGAGAGGTTTGGAACA GTAATAAGCTCTTATTACAGAGGTGCACATGGGATCATTCTCGTCTATGATGTGACACGACGCGAGACATTTACAAACGT TGTGGAAATATGGGCAAAAGAGGTTGATCTGTACTCCACTAATCATGATTGCATCAAAATTCTTGTTGGCAATAAGGTGG ATAAGGAAAGTGAAAGAGCTGTAACCAAAGAAGAGGGTATGGCTCTTGCAAAAGAGCATAGATGCTTATTCCTAGAGTGT AGTGCCAAAACTAGAGAAAATGTTCAACAATGCTTTAATGATCTCACATTAAAGATACTAGAGGTGCCGAGTTTGCGGGA AAAGGGTTCTGTTGTAGTAAAGAGACAAAAGCAAAAGCACTTGTATGAGACACCTCAAAGCGGAGGTTGCTGTTCTTAG
Download CDS Sequence

Protein sequence (LotjaGi5g1v0254400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSGSKVGNSNYDYSFKILLTGDSGVGKSSLLLSFISNSNSLYDLSPTIGVDFKMKLITISGKRLKLTIWDTAGQERFGT VISSYYRGAHGIILVYDVTRRETFTNVVEIWAKEVDLYSTNHDCIKILVGNKVDKESERAVTKEEGMALAKEHRCLFLEC SAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQSGGCCS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.50.300
2 192 191 4.7E-62 –
PANTHER
PTHR24073
6 202 197 1.3E-110 –
PANTHER
PTHR24073:SF643
6 202 197 1.3E-110 –
SUPERFAMILY
SSF52540
11 200 190 4.79E-57
IPR027417
ProSiteProfiles
PS51419
11 212 202 31.375 –
SMART
SM00173
13 182 170 4.7E-29 –
TIGRFAM
TIGR00231
14 173 160 1.4E-29
IPR005225
SMART
SM00175
16 182 167 6.3E-89 –
CDD
cd01863
16 179 164 3.79733E-93 –
PRINTS
PR00449
16 37 22 1.8E-34 –
Pfam
PF00071
17 180 164 2.4E-52
IPR001806
SMART
SM00174
18 182 165 7.7E-12 –
SMART
SM00176
21 212 192 0.0012 –
PRINTS
PR00449
40 56 17 1.8E-34 –
PRINTS
PR00449
58 80 23 1.8E-34 –
PRINTS
PR00449
122 135 14 1.8E-34 –
PRINTS
PR00449
157 179 23 1.8E-34 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0254400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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