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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0254400 |
| Transcript ID | LotjaGi5g1v0254400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT5G03530.1 RAB GTPase homolog C2A; Swiss-Prot: sp|O49841|RAC2A_ARATH Ras-related protein RABC2a; TrEMBL-Plants: tr|K7N4G3|K7N4G3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0254400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56343744..56348407) extracted from Lotus japonicus Gifu genome v1.2.
GGAGTTGATTTCAAGATGAAACTTATTACAATTAGTGGTAAAAGATTGAAGCTTACAATTTGGGACACAGGTAGTTGTTT TTCTAGTTATTTGATCGCATTTTTCATTTATCTTTTTGTGAAGAAATTTATCATAGATATATAATTTCCCTTATCTAATA CAATCTTTGTTCATCTGTGAAAATTGTTGTAATATAACTGCTTTATTGTCTTTATCATTTAGAAACTATTATTTCTAGTA GAACTTTGAAGTAATATTTCTAAGATGTCATTTGCCTTTACTGAGGAAAGGATAGGGTGATGTTAGTGCAGCATTTGTTC CTTATCAAATAGATATCTTGGAATGGGAAAAAATGAAAAGAATTTGAATATGACTGTGGGAGGTGTTGAGAAGTCTCACA TTGACTAGTAATATGGCCTAAATAGTCCTTAGACAGGGTAGAGCAATCCTCTCACCTGAGCTAAGGCCTAACCCGATTCT AATAGGAGCAGGGACGGATTCAAGTGGAGAGGCATGAGGGCAAATGCCCTCACTTGAATTTGGTATAATACATTAGAAAA AAATTTGAGTAGTAAAAGTGTGCGGTTTTTTATGATTTCTTTGATAAAAACTGCCCTCACTTAATTTGAATAGTAAAAGT ATGTGATTTTTATTGACTCATTTGATAAAAATTGTCCTCACTTATGTCCCACATTGCTTAAAGTTGAAACTTTTGTACTT AGAGTATTTTTTTATTTGGTGTTTCTTGAATCTTGACTAATGCCCATCAGATATTAGTATTACTATTACACCATTCTTTC ACTCATTTCTTTTGTCCAATGGTTATACCATGGCTCACAAAATATCCCCAAATCCTCAACTTTTCTCCTTCTTTCATTCA ACACTCGACAGCATACAACAAAGTAGAGAAAGAAGGAACCGTAACATGCAATATATGAAAACTCGTAGGGAACAATTATG ATGTGCTTTAAAACTTCTAATAGTATATGTTAATTTTTTTGTGACGTATTTATATGTATATACTGCCCTCACTAGATTAA ATTCCTGGATCCGTCACTGAATAGGAGGATCAATAATTCCTTCTACTGCTTGATGGAACTGAAAAAATTAGATGGAATCC TACTTTTATTACCACAATTTGGTAATGAATTCTATCATTAGTAATGATACAAGGAGTAAAATCTAACACCATTGGAATTA TGTCTTATTACTAAATAAACTCTTCAAATGGTTCTTTCTCTTCTTTCTATTATTTGGATTGTTCAATGATGATTGAAGCA AATAAATAATCTTGCTTCATAGGTCCACAACCATAATTATATTGTTTGGATTTGAATATTAACTTTTTCTTTAAACTCAC TGGAACTGTGCTCTAAGATTGATGCAACCTAGTGATTACTGATAAGCAGTGATAAGAAGTCATTAGCCTCTTATAATAAC AAATTTTATAGGTCAGAGCCTGTTCTTTGTCTGATCTCCCTTCCCTCAGGTAAAGAAGCTTTGAAGCTAAATTTCGTGAT GCAAATTTTAATCTCTCAATATGGATTATTTTCAAGCCTCAAGTATAGGCGCGCTATAGCTTGATTGTAGGGTAACATGA AAGTTACTGAAAGTTCAGACCTGTGGGCACATGATCAAAAGATTTTGGGGTCTGCACTCAATCACATAAAGGAAAAATTA AAAAGAAAATGAAAAGATTAACTAATGACCACAGAAGTATAATGTCTATCAGCTCTATGTCAAAGGGGTGGGGATGGTGA AGAAATTCCACTGGGAAAATCCAAAATAGAGACTACTGATGGATTCATTAATCTCATATGGCTGAGACTATAAGAATTTA AAACTCTTTTATTCTCGAAGTATTACGTTAACTTCAACATGTTCCGTCAAAACTCAGTAAGACTATTAAATTCATATGTT TCTATGGCATTCATAGTCACCAAATGAAGCTTGCAGTAAAGTGAAATTGGGCAACACTGAATCAACTTGAGGCTTTCATT GGCCATGTTGAATTCTACAACTACAATGTTACTTATTCAATCAGATTGCTTCTTCCACTGATCAGTGAATAACTACTTTT AATGATGGTTTTGGGATTATGTTCTCATATGTGGTACTGTTTACTATTGCCTAATAGGATATGCTTATCTCTGTGATTGC ACTAGTTCAGCAATGATGAATAGAGATGATTTTTCTCCACTAGTAACTGTCAACATAGGCTATTTTGTAACTGTGCTTCA AATTACTACACACACATTTATGCATAAGACTATGGAGAAAAAATTTAGATAACTTAGTATGGACTAGCACATGCGCGCAC TCTTGTCCCTGCATTCACCAGTTAGTCTTGGTGCATTAACCTTAACTAAAATTCATTTGATCAACCAAACCATTGGATTC TGTTTATATGAAACCTCGCGGTGGTGACTTATTGTCGTTGGATTATAACATTTAGTTCTTCTGGCAGCTGGACAAGAGAG GTTTGGAACAGTAATAAGCTCTTATTACAGAGGTGCACATGGGATCATTCTCGGTATGCTCTCTCTCTCTCTGCCCCTCT GTGCGTGCACACGCGCATATGTTTTAAAAAATTGAATTTTTTCTTTTACATTCTTAGATATATGGCACTTAAAGATTTAC TTTTGTCAAGTCTATATTTACAATGGCACATTCGAATATGAGACACATTCACCCCCCTCCGTATTGTTCTTCCCACAAGT CACATGCCCTTGAAAATAAGCATGTATAGGCTCTTTCATGAACTATCCCCCCTCTGTACTGTAAGCTTTGCACCCTGCTC TTATTCTTACTGTAATGCTTGAATGTACTAATATTCCCTCGAAGGAACCATTTGACATAAACTTCCACGATAAACCTCTC TATGTAGCTTGTACCCCACGCCACCCATCTTTGTTATATGTTTCACTACTTGTTCAGGTAGATTAGGACTTTAAATACTT GACACTCCTACACTTGCAAATCTTTCTTTCTGTTCCTGATTCATGCTCTAGCTTGGAATCACTAATGCCAATGTGAATTT GAGTGTATCTATTATATGATCAATGCTGCTGCAAAGGTAAGAAATCCTGTCACTGTCACAGTTTGTGTCCTGATGGTTGT AACCACATATTTTTGTGCTGCTTTGCTGAATAAAGCATGTTCCATAAATTATTGAGAGTTTATGGTATGAAAATGGATTT TACCGCAACGAGTTTAGTGTTTACTGTTCAAAGAGCTAGAGGGAGAAAAAAACAAGTGCTCAGAATAGTAATATGCTTTG CTTAATGGTTTTCTATCCTCTTTATCATTTTGTTAAGTTCTTTAAAGGAGTAATATGCTTGCACCAATGTGGTGCTCACT GTTCATGCATTTAAGTATTGCCTTTAGTGTGTACATCTAACAGCTTTTTCTTCAATTTTCTAATAGTCTATGATGTGACA CGACGCGAGACATTTACAAACGTTGTGGAAATATGGGCAAAAGAGGTTGATCTGTACTCCACTAATCATGATTGCATCAA AATTCTTGTTGGCAATAAGGTGGATAAGGTAAGTTTTACAGTGAATAATCTTGTAGTCCTTTCCTTGATCAGGAAAAGGC AGAAACAATACAAATTTACCTGACAATTTAAATTGTAATTCAAATATATATATTACTTAATATTATCTTGCGGATTGTGA AGAATGTCTATTGTATATATTATTTTTCAGGAAAGTGAAAGAGCTGTAACCAAAGAAGAGGGTATGGCTCTTGCAAAAGA GCATAGATGCTTATTCCTAGAGTGTAGTGCCAAAACTAGAGAAAATGTTCAACAATGCTTTAATGATCTCACATTAAAGG TATTGTTATTTGAATACATGCTAGAAAGATCCTAGTACATGGTCATACTTGGCATCATCTACACCATAATTGAAAATTTG GCTAATTGACTTGAAGATAGACCTCTAAATCAAATTTTGCATGCACATTGATATGACTACTTTTATTTAAGTGAAAGCTC CTTTCTGGTATTTGAGTTAAAACTTCCACACTTCTATGATAAGAACCTGGCTTTGCATTGAAGTTTTGTCCTTAAGTTCC TCTCACAATCTCCAACCAGCATCCTCCTCTGCTCTCCATCTGATAAATTCTCTTGTTCTTTACAGATACTAGAGGTGCCG AGTTTGCGGGAAAAGGGTTCTGTTGTAGTAAAGAGACAAAAGCAAAAGCACTTGTATGAGACACCTCAAAGCGGAGGTTG CTGTTCTTAGTAAATTTGCTTCAACATGAATGTGCAATAGGTTTTACATCAAGAGTCAGATAATTTGGAATTGGATGATC ATGTGCTCCAATGTTCAGTACAGTCTTTTTTATTGCTTTCACAAGAAGATGCTTGAGATGGATATCTTAACATCTGTTGG AGCCATAGCATGACTCAGTTTATGGTAGTCAAGTTTATCACAGAACTATTAATATACTAGCCTTTTTCTTACTTACGTTA CAGTTTTAGAAACACCTGTACTCTGCATATGTAAAATGTAAATATATCTACAGTTTCTATGTATTAGGGTTGGTTTGAGA TTCGGTTAGGTTGGGATATTCAGCAAAATACATTTATTATTTATTATTTTCTCCCCTTCTAAGCATGAATGATACTGTCA AAAGAAAAGCTTGAATGAGAAAAG
CDS sequence (LotjaGi5g1v0254400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACTTATTACAATTAGTGGTAAAAGATTGAAGCTTACAATTTGGGACACAGTTCTTCTGGCAGCTGGACAAGAGAG GTTTGGAACAGTAATAAGCTCTTATTACAGAGGTGCACATGGGATCATTCTCGTCTATGATGTGACACGACGCGAGACAT TTACAAACGTTGTGGAAATATGGGCAAAAGAGGTTGATCTGTACTCCACTAATCATGATTGCATCAAAATTCTTGTTGGC AATAAGGTGGATAAGGAAAGTGAAAGAGCTGTAACCAAAGAAGAGGGTATGGCTCTTGCAAAAGAGCATAGATGCTTATT CCTAGAGTGTAGTGCCAAAACTAGAGAAAATGTTCAACAATGCTTTAATGATCTCACATTAAAGATACTAGAGGTGCCGA GTTTGCGGGAAAAGGGTTCTGTTGTAGTAAAGAGACAAAAGCAAAAGCACTTGTATGAGACACCTCAAAGCGGAGGTTGC TGTTCTTAG
Protein sequence (LotjaGi5g1v0254400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLITISGKRLKLTIWDTVLLAAGQERFGTVISSYYRGAHGIILVYDVTRRETFTNVVEIWAKEVDLYSTNHDCIKILVG NKVDKESERAVTKEEGMALAKEHRCLFLECSAKTRENVQQCFNDLTLKILEVPSLREKGSVVVKRQKQKHLYETPQSGGC CS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 162 | 162 | 22.121 | – | |
| Gene3D | 1 | 158 | 158 | 5.9E-43 | – | |
| SMART | 1 | 132 | 132 | 1.8E-7 | – | |
| PANTHER | 1 | 152 | 152 | 3.5E-79 | – | |
| SMART | 1 | 132 | 132 | 1.5E-47 | – | |
| PANTHER | 1 | 152 | 152 | 3.5E-79 | – | |
| SMART | 2 | 132 | 131 | 1.0E-10 | – | |
| Pfam | 2 | 130 | 129 | 3.1E-36 | ||
| TIGRFAM | 2 | 123 | 122 | 1.5E-15 | ||
| SUPERFAMILY | 2 | 151 | 150 | 6.51E-37 | ||
| PRINTS | 4 | 26 | 23 | 9.2E-12 | – | |
| PRINTS | 72 | 85 | 14 | 9.2E-12 | – | |
| PRINTS | 107 | 129 | 23 | 9.2E-12 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0254400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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