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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0259700 |
Transcript ID | LotjaGi5g1v0259700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SHA3|I3SHA3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56821301..56823132) extracted from Lotus japonicus Gifu genome v1.2.
CGTTCATTAAATCTAACGGCTAAATGTCTTTTTCACGCGTGAATGACCTATTCACTAGTTCGCCCTAGTCGCTGCCTCAT ATATTATATATTTTAAGCTAAATAACAAAATTGCAATTGTTCATTCTCTCACCCTTAGATTGAGTTGAAGGCAGTGCTAG GTTCTGGTGGAGAGCGAGTGAATCGGAAATTTGGATGCAAGAATGACGGGCAGCCAAGAAATCTCAATGTCAACACCCGC TTCTTCCAAGGTATCCATCCCTTTTCAATTCCGAATCCCTAATTTTTCTAGGGTTTATCCGTGCACAATTTCACACTGAA TGGTTGACTGTTTTTGATTCTTCAGTTTTCATCGATTCACACTGAATGATTGTCTGTTTTTGGTCAGTGGTATATAGTTG CTTGTCGTTGTGCTCTTAAGTAGGTGAATTGTAACACATAGTCACATAGTCTATCATGGATGGGTATGCATCTGTTGTTG TTTATGTAGTGAAAGCTTTGTCATGGTTGATTCCAAAAGATATCTGGAAAAAAAAATTGTTAATTTTCTGAATGACAGTT TCTTTTTAACCAAACAATTATTCAATCCAAATTTTGTTTGTTAATTGGCTGTTTTGAATGACCAACAACATCTACCAAGA ATTTCGACTATATGGATCACTCAGACGCCATTGTGCTTGATCAAAAACCAAAATTTGTGGGATATTATTAGTCATGAGGT TGCTGATTACTAAATTTTGTATTTAGTAATTAGTAATGTTTTGATAAACCTTGAAAGAGTCTAATTTGATTCATTAGTCA TTACTCATTGTGTTTAGATGATTTTGCTGCTGCTACTTGTTTGTTGCTGGTTAATATCAGCTTTTCCATAGGGAGAAGGA GGTAAAAGATTCGCACAAAAAATCAGAAAGAAAGCTTGAAGATTAAATATTTGAAAAAGTTTGAATAGTTGCAAAGCCTG GAGTATTAAATCTTTTATTGAATTTTATAACTTCTGCTGCTTACTGAACTGCTGGTAAATTATTGTGACAGAGATCAGTG TTAAGTCAGGGTTCCGTTGATATATATGCTACGCAGTGCATTAAGTGCTTGAAGTGGAGGGTGGTTGATACGCAGGAGGA GTTTGAAGAGTTTAGACAAAAAGCCAATGAGGAACCTTTTGATTGTAGCAGAAAGGCTAATTGTTCCTGTGATGATCCTG CTGACATTGAATATGACTCCTCTCGGACATGGGTTATTGACAAACCTAATGTTCCAAAGACGCCACAAGGTTTTAGGAGA AGCTTGGTGCTTAGAAAAGATTACTCTAAGTTGGACGCTTACTACATCACACCTACCGGCAAAAAACTCAGAACCCGCAA TGAGATTGCAGCATTTCTAAAAGAACATCCAGAATTCGAAGGTATATCTGCTCAGGATTTTGATTTTTCATCCCCAAAGG TAATGCATGAGACCATCCCGGAGGGTCTTGAGCAGAAGGCATCTGCTAGCAAAATTGCAAAAAAAGTTAAGATAGCTAAA GATGAAAACTGACAAATATCATCACAAGTTTGCATGCTGGTGTAGGTGCTCAATGCAGTGACAGAGAAACAAAGTTTGTT CATGTCTTTCTAAACAGACATTCACTGAGTCTTGTGTAATTCAAACAGAACACCCGAAAAATATTTGATTATGTCATTCT GCACTGATAAAATACAAGGTTTCATTGAACTTTATGTCTCTATGCTATCTTTGAGGTTTGATTTTAGTCCTCCAATAAAA ATTTAAAGGGATTTTAATATCTCGGTATTTTTAATCATTTTAAGTCTTTTATCAATTTTCTTTTACTTGAAA
CDS sequence (LotjaGi5g1v0259700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGGCAGCCAAGAAATCTCAATGTCAACACCCGCTTCTTCCAAGAGATCAGTGTTAAGTCAGGGTTCCGTTGATAT ATATGCTACGCAGTGCATTAAGTGCTTGAAGTGGAGGGTGGTTGATACGCAGGAGGAGTTTGAAGAGTTTAGACAAAAAG CCAATGAGGAACCTTTTGATTGTAGCAGAAAGGCTAATTGTTCCTGTGATGATCCTGCTGACATTGAATATGACTCCTCT CGGACATGGGTTATTGACAAACCTAATGTTCCAAAGACGCCACAAGGTTTTAGGAGAAGCTTGGTGCTTAGAAAAGATTA CTCTAAGTTGGACGCTTACTACATCACACCTACCGGCAAAAAACTCAGAACCCGCAATGAGATTGCAGCATTTCTAAAAG AACATCCAGAATTCGAAGGTATATCTGCTCAGGATTTTGATTTTTCATCCCCAAAGGTAATGCATGAGACCATCCCGGAG GGTCTTGAGCAGAAGGCATCTGCTAGCAAAATTGCAAAAAAAGTTAAGATAGCTAAAGATGAAAACTGA
Protein sequence (LotjaGi5g1v0259700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGSQEISMSTPASSKRSVLSQGSVDIYATQCIKCLKWRVVDTQEEFEEFRQKANEEPFDCSRKANCSCDDPADIEYDSS RTWVIDKPNVPKTPQGFRRSLVLRKDYSKLDAYYITPTGKKLRTRNEIAAFLKEHPEFEGISAQDFDFSSPKVMHETIPE GLEQKASASKIAKKVKIAKDEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 13 | 179 | 167 | 1.2E-88 | – | |
PANTHER | 13 | 179 | 167 | 1.2E-88 | – | |
ProSiteProfiles | 22 | 77 | 56 | 10.976 | ||
Pfam | 29 | 74 | 46 | 6.5E-7 | ||
SUPERFAMILY | 65 | 176 | 112 | 9.81E-24 | ||
ProSiteProfiles | 83 | 153 | 71 | 15.984 | ||
SMART | 85 | 158 | 74 | 4.6E-16 | ||
CDD | 87 | 159 | 73 | 1.30565E-21 | – | |
Pfam | 91 | 154 | 64 | 6.4E-14 | ||
Gene3D | 91 | 152 | 62 | 6.5E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0259700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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