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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0259800 |
| Transcript ID | LotjaGi5g1v0259800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyl-CpG-binding domain protein; TAIR: AT3G63030.1 methyl-CPG-binding domain 4; Swiss-Prot: sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4; TrEMBL-Plants: tr|I3SU39|I3SU39_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0259800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56831668..56833917) extracted from Lotus japonicus Gifu genome v1.2.
ACACAATCTATGAATATTGCGGTCGAGTCAGATTGCAACAAGGTAATTTCGGATCGCTTTGAAAGCAATAAGTATCCATG TGCGGTGGCGAAAAAGATCAAGAAGCTTATGCCCTGTTTTAATTCAATTGAGTTCGTTCATGTTTACAGAGTCGCAGATA ATGCCGCTCATATCCTTGCTAAGTTTTCTTCGATGCCCAAGGATGAAACTTGTTTTAATTGTGCTCGTCAGTGCGTTCAA GCTCGTATTCTCTCTCTTTGACATTTTTCTGAATATCTTTTAACGCAGTTCCGTTTTCCGGAAAAAAAAAAGTAAGAAGA TATCCTCTTACATTTCACCATTTTTCACGGAACCAAAAACGTACCGGAAAAATCCAACTTACAAAATACGAATATAACAA ACATTGAACATAACCGGAGTATTGTCTCGTTCCATCTCTTCCAACGTTGTACCAAACAAAACGCTACCGTATATATATGT TCATTTCACCATTCGGTTGAGCTGCATGCTGTTGGTGAGTGAGTGAGTGAATCAGAAATTTGAGTGCATCAATGGCGACC GGTCAAGAAATCACCAAATCTCCACCCACTTCCTCTTCCAAGGTATCAATCCCTTTCTCTCACTCTTTTTCATTCCTAAT CCCTAATTTTCTAGGGCTTTTATGTGCATTAGATCATCTACTTCTGAGGAACCCAATTCCTAATTTTTCTAGGGTTTTTC CATTTTACCTTTGATTCTTCAGTTTTCATTGATTCACATTGTAAATTGTATTTTTTTGATCAATGGTTGCTTGTCCTTGT GCTTTTGAATAGGTGAATTGTATCATATAGTCTATCATGGATGGGTATGCATCTGTTGTTTTATTTTTTATTAAGCTATG GCATGGTTGAATTGAATGATCAAATGTGTATAGGTTGAGTAGGAGAAGATTGAATTCAATTCGATTGCGATAGATATATC GAAAAAAGCCAGTAAGGTCGACTATATGGATCACCCTATGTATCGAAAAAAGCCAGTAAGCTGGAGTTTTTAATTTTCTG AATGACTGTTTGTTTTTTAGCCAAGCAAATCTGAATTTTGTATGTGTAATTTGCTGTTTTGAATAAACAATAGCAAAAGC CAGTAAGGTCGACTATATGGATCACCCTATGTATCAAAAACCAAATGTTGTGATAGATCTGAATTTTGTATATTATTGGA GGTTGCTGCTTACTGAGTTTAGTTTTTAGTCGTTAATGATGTTTTGATAGATCTTGAAAGAGTCTAATTTGATTTGTTAG TCAATACTCATTGTGTTGAAATGATTTTGCTGCTGCTACTTGTCTGTGTCTGGTTAATATCAGCTTTTTCCATAGGAAGG AAGGAAGCTTATAGATTAACATTTGATCTTTATTGAATGTAATAACTTCTGCTGCTTTCTAAACTGCTGGTTAATTGTTG TGACAGAGATCAGTGTTGAGTCAGGGTTCCATTGATGTATATGCTGCACAATGCATCAAGTGCTTGAAATGGAGGGTGAT TGATACCCAGCAGGAGTTTGAAGAGATCAGACATAAGGTCAGTCAGGAACCTTTTGATTGTAGCAGAAAGGCTAATTGTT CCTGTGATGATCCTGCTGATATTGAATATGACTCCTCTCGGACATGGGTTATTGACAAGCCTAACCTCCCAAAGACACCA GAAGGGTTCAAGAGAAGCTTGGTGCTGAGAAAGGATTACTCGAAGTTGGATGCTTACTACATCACACCTACTGGCAAAAA GCTGAGAACCCGCAATGAGGCTGCAGCATTTCTGAAAGATCATCCAGAACTCCAAGGTATATCTGCTCAGGATTTTGATT TTTCATGCCCAAAGATAATGCAGGACACCATCCCAGAGATTGTTGAGCAGAAGGATTCTGCTAACAAAAAAGTTAAGAAA GCTAAAGATGAAAATTGACTATTATCATTACAAGTTTGCATGCTGGTGTAGATGCTCATGCTGACTGGTCTGTTAGATTG CGTTGTCTTTATATTTTGTTGGATTATGTTGTTTGTGTGTAATCACACACCTAAGCAGATATTTTCTAAGTTTTGTGGGT TTTAAACAGAACACCCAAAAAGATATCCCTTACATCGGGCTTCCTTTTCTTTTTCCTTCAAAATATTTTGTTGGAGTTGC ATGAACAGAAATATATGAATGTTACATTCTGCACTTAAATTGAGCTTTATGTCTATCTATGCTATCTTTGATGTTTGATT TTAATCATCC
CDS sequence (LotjaGi5g1v0259800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCGGTCAAGAAATCACCAAATCTCCACCCACTTCCTCTTCCAAGAGATCAGTGTTGAGTCAGGGTTCCATTGA TGTATATGCTGCACAATGCATCAAGTGCTTGAAATGGAGGGTGATTGATACCCAGCAGGAGTTTGAAGAGATCAGACATA AGGTCAGTCAGGAACCTTTTGATTGTAGCAGAAAGGCTAATTGTTCCTGTGATGATCCTGCTGATATTGAATATGACTCC TCTCGGACATGGGTTATTGACAAGCCTAACCTCCCAAAGACACCAGAAGGGTTCAAGAGAAGCTTGGTGCTGAGAAAGGA TTACTCGAAGTTGGATGCTTACTACATCACACCTACTGGCAAAAAGCTGAGAACCCGCAATGAGGCTGCAGCATTTCTGA AAGATCATCCAGAACTCCAAGGTATATCTGCTCAGGATTTTGATTTTTCATGCCCAAAGATAATGCAGGACACCATCCCA GAGATTGTTGAGCAGAAGGATTCTGCTAACAAAAAAGTTAAGAAAGCTAAAGATGAAAATTGA
Protein sequence (LotjaGi5g1v0259800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATGQEITKSPPTSSSKRSVLSQGSIDVYAAQCIKCLKWRVIDTQQEFEEIRHKVSQEPFDCSRKANCSCDDPADIEYDS SRTWVIDKPNLPKTPEGFKRSLVLRKDYSKLDAYYITPTGKKLRTRNEAAAFLKDHPELQGISAQDFDFSCPKIMQDTIP EIVEQKDSANKKVKKAKDEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 10 | 177 | 168 | 4.9E-88 | – | |
| PANTHER | 10 | 177 | 168 | 4.9E-88 | – | |
| ProSiteProfiles | 23 | 78 | 56 | 11.123 | ||
| Pfam | 29 | 75 | 47 | 4.7E-8 | ||
| Gene3D | 60 | 180 | 121 | 1.9E-12 | – | |
| SUPERFAMILY | 66 | 159 | 94 | 9.81E-24 | ||
| ProSiteProfiles | 84 | 154 | 71 | 15.109 | ||
| SMART | 86 | 161 | 76 | 2.9E-13 | ||
| CDD | 88 | 160 | 73 | 1.2665E-20 | – | |
| Pfam | 90 | 154 | 65 | 3.1E-12 | ||
| Coils | 159 | 179 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi5g1v0259800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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