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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0261200 |
| Transcript ID | LotjaGi5g1v0261200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rho GTPase-activating protein; TAIR: AT4G03100.1 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein; Swiss-Prot: sp|F4JI46|RGAP2_ARATH Rho GTPase-activating protein 2; TrEMBL-Plants: tr|A0A0L9TWU4|A0A0L9TWU4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0261200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:56989750..56993045) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAAAAGAGTGGCCGTTTGAAATTGAAGTTGGAACAAAGTTTCATAGAGAGCCTCCAATTGAATGCAACCCAACAAAA CATCACACACACATTTACTTCACTCAAATTTAAAACTCTCTCTGTCTGTCTCTTATTACGCAGAGTTCTAGAGAGAGACA GCATTTTCTAGAGAGAGAAACCATGACGGGCCTTGTAATGGTGACCAAAGGCGGTGGATGCGGTGGCAAGAGAACCAGAG CTTCTCGCACCGCCGAAGAGGAACAAGACCGCCAGAACCAGCTCTCACTCGTCGCGCTTCTCCTCGCGGCGCTCAGGAAA TCCATGGTGGCTTGCAGAGTCGACCGACCCGATGAAGCGATCTCCACAGTTCACCAAATGGAGATCGGATGGCCTACCGA CGTTCAGCACATCACTCATGTCACCTTCGATCGCTTCAATGGCTTCCTGGGTCTTCCTGTTGAGTTTGAGGTTGAGATCC CGGGTCGGGTTCCCAGTGCTAGGTAATAATTTTTTCTTCATTTTTTGTTAAATGTTTTTTCTTTCGTTGAAATTTTGTTA GTTTTCAAATGGGTTTTGCTTAAAATTGAATTTTTTGCTTAAAAAATTTAGTTTTTTTGGTGGGAGTAGCTTTTTGTGTT GATGGGTATGTTTCTGAATTTCTGTGTGTGGAAGAGGATGAAAGAGAGGAAGTTGAAGACTTTTGCTTTTCATTATCCTT CAAGGTTCTTTCAGCTGCTAGGAGCAAAGCTGAAGGAAGATGCATGACTAAGTTGAATAGGTGTAGTGAAACCAGATTGA GGGGCTTAACATACATTGCAAAAAATTAGGTTTTTTGACTTGGGTTTTAATTTTTGGGTTTGTTATAGTCCAGAAAATGC AAACACTAGTTTGGTTCTATTATGTTGTTCCTTAAAATTGGGCTTGGCTTAGATATATAGGTGTAAAATGGGGGAATTCA GATTATTTGGGGTTTGGGGCACTTGTTGATTGTATGCTATGGTAGCCGCGAAATCGGATAAAGGCTCTTTCAGATAGGTA GACATTTGTGTTTGTATCCATATTTTTTCATTCAAGAATTCATTTTGACTTGAAGTGTCTGTGACTGTGTGACTATTATT GTTCTTCCAATCACACACTACAACAGAATCGCTTGGGCGAATTTCTTGAAGCATGTGCTCTTCTATCTTATTTACAGTTC CTCATTGGCAACTTGCTGCTATTACATTGTTCAGAAGTAAAAAAAAAAAAGAAAATTGTAATTTTTTATTTTACCCTAGT TTGTAACATCTTTCATACTTTTTGACTTGTTGTCATCTATTGTTGCAGTGTAAGTGTATTTGGCGTCTCTGCAGAATCTA TGCAGTGTTCTTATGATTCAAAAGGGAACAGTGTCCCTACAATTCTCTTACTAATGCAGGAACGTTTATACTCCCAGGGA GGCTTAAAGGTAGAACTCAATGTATACTGCATTTTATTATTTTTTAACATTAAGGTTTTGCAAGCAGCCAGTTTCAGAGA AATTCATTTTTTCTTTTCAATGGTGTTTTTTCAGGCTGAAGGAATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGC ATGTGAGGAACCAGTTGAATAGAGGCATTGTGCCAGATGACATTGATGTCCACTGCTTGGCGGGACTAATTAAAGCCTGG TTCCGAGAGCTTCCTCAAGGAGTGCTGGATGGACTTTCCCCTGAACAAGTTCTGCAGTGTAACACCGAAGAAGAATCTAT CGAGCTTGTGAAGCAGCTGAAGCCAACCGAGACTGCCTTACTCAACTGGGCTATTGATCTCATGGCCGATGTTGTAGAAG ATGAGGAATGTAACAAAATGAACGCAAGAAACATTGCAATGGTTTTTGCTCCAAACATGACTCAGGTATGCGACATACCC TTTTACATAAAATTCGCTTAATGTTCATGTCTTTATAGGTTATCTTAGACTATCCATTTCCTCTGTTTTGGGATTTTGTT AAAATCTGAATTATCTAATCATGGTTATCTTCACATAAGACATCTATAGTTTACATTACCAAAGAAGTTGCAACATTGCG CTTTTCATTTCTTGCCCTCATTAGACATATACACACTGGGAAGTCATCTATTGTATTTTGATTTTTGAATTCTTGTTTAT GTGTTTGTCTCCTGGAACAGATGTCTGATCCTCTAACCGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACA TTGATAATGAAGACACTTAGAGAACGTGAAGAAACAGCAACAGGTGGATATTCACCCATGTCCTTTCATTCATCAGATCG CCGGTCTGAGGCTGAATATGACAGTCAGCGAGAAATGGACACAAGCGGTGAGCTGAGAGGGGCCAAATCAGATTGTGGTT CCCACTACAGCCATAGCAGTGAAGAGGAAGTGGAGGCTGAATCTCTGAGTGAGATCGAAGAACGCTTCTTGAAGCAGTTG GATGAGAACACAAAAGGATTCTCAGAAGAACCTGCAGCTTCTTTGCAAGAGTATGTTAACCCCAGTAACTCTGGCTATAG CGTGGAACCTGCTGCATCAAATACTGATAGCAAAACAGGGAAACCTTGCTTGAGGACCGGTTTGGATTCAAGTATTGACT CAAGTAGGGCATGGACAGGCACCAAAGAAGTGGAGATGATGGATAAATTTACAGATTCGGTTCCACCAGTGCCGCTGGTT GCATCTAGTTAAGAACTGGTCTTCTTCTAGCAGTTTTATACATCTTGTTTCATATTTTGTCTCTAGAAGTAGGTTTGCTT ATGTAAATTTATACATTGAGTAGGAACTATTTGCTCCTTGTGGATTGTGGGAAGGTTATGTTCAGTTCAGGGCTGAATTA GACCTGGTTCTGTATGTTCCGCCTGTACTGGACAACTCTAACCATGACAAAATGGGAATGGCTAAGGTCTAGCCAAATCT TCAATTTTCAAGTAGGTGAAAGTTCTAGGCATAGGTAGATCGATTTAGCTTGAGATATACCTTGTGTGTATGGTCAAAAT TTGATGGATTTCAGATTTGATTACCGTGGTGTTTGTATAGTGAACACCACAATGGTAACGGGATAATATCCTAGTTGCCG TATCTCAGCATGTTAGATTGTTAGGCACAGAGGGGCTGTTTTGTCCTAGTAACTCACCATTGTGCAATTTTTTTTAAAAG TCAACGATTGAGATTTAAAGTCTTAGTTTAGTGATATCATTTACTCCTATAACCAAAGTCTTACTAGCTCCACCACATAC CTTACTTCACCTTCAG
CDS sequence (LotjaGi5g1v0261200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGGGCCTTGTAATGGTGACCAAAGGCGGTGGATGCGGTGGCAAGAGAACCAGAGCTTCTCGCACCGCCGAAGAGGA ACAAGACCGCCAGAACCAGCTCTCACTCGTCGCGCTTCTCCTCGCGGCGCTCAGGAAATCCATGGTGGCTTGCAGAGTCG ACCGACCCGATGAAGCGATCTCCACAGTTCACCAAATGGAGATCGGATGGCCTACCGACGTTCAGCACATCACTCATGTC ACCTTCGATCGCTTCAATGGCTTCCTGGGTCTTCCTGTTGAGTTTGAGGTTGAGATCCCGGGTCGGGTTCCCAGTGCTAG TGTAAGTGTATTTGGCGTCTCTGCAGAATCTATGCAGTGTTCTTATGATTCAAAAGGGAACAGTGTCCCTACAATTCTCT TACTAATGCAGGAACGTTTATACTCCCAGGGAGGCTTAAAGGCTGAAGGAATATTTCGCATAAACCCAGAAAATAGTCAA GAGGAGCATGTGAGGAACCAGTTGAATAGAGGCATTGTGCCAGATGACATTGATGTCCACTGCTTGGCGGGACTAATTAA AGCCTGGTTCCGAGAGCTTCCTCAAGGAGTGCTGGATGGACTTTCCCCTGAACAAGTTCTGCAGTGTAACACCGAAGAAG AATCTATCGAGCTTGTGAAGCAGCTGAAGCCAACCGAGACTGCCTTACTCAACTGGGCTATTGATCTCATGGCCGATGTT GTAGAAGATGAGGAATGTAACAAAATGAACGCAAGAAACATTGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGA TCCTCTAACCGCCCTGATGCATGCGGTTCAAGTGATGAACTTACTCAAGACATTGATAATGAAGACACTTAGAGAACGTG AAGAAACAGCAACAGGTGGATATTCACCCATGTCCTTTCATTCATCAGATCGCCGGTCTGAGGCTGAATATGACAGTCAG CGAGAAATGGACACAAGCGGTGAGCTGAGAGGGGCCAAATCAGATTGTGGTTCCCACTACAGCCATAGCAGTGAAGAGGA AGTGGAGGCTGAATCTCTGAGTGAGATCGAAGAACGCTTCTTGAAGCAGTTGGATGAGAACACAAAAGGATTCTCAGAAG AACCTGCAGCTTCTTTGCAAGAGTATGTTAACCCCAGTAACTCTGGCTATAGCGTGGAACCTGCTGCATCAAATACTGAT AGCAAAACAGGGAAACCTTGCTTGAGGACCGGTTTGGATTCAAGTATTGACTCAAGTAGGGCATGGACAGGCACCAAAGA AGTGGAGATGATGGATAAATTTACAGATTCGGTTCCACCAGTGCCGCTGGTTGCATCTAGTTAA
Protein sequence (LotjaGi5g1v0261200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTGLVMVTKGGGCGGKRTRASRTAEEEQDRQNQLSLVALLLAALRKSMVACRVDRPDEAISTVHQMEIGWPTDVQHITHV TFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQ EEHVRNQLNRGIVPDDIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESIELVKQLKPTETALLNWAIDLMADV VEDEECNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSFHSSDRRSEAEYDSQ REMDTSGELRGAKSDCGSHYSHSSEEEVEAESLSEIEERFLKQLDENTKGFSEEPAASLQEYVNPSNSGYSVEPAASNTD SKTGKPCLRTGLDSSIDSSRAWTGTKEVEMMDKFTDSVPPVPLVASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 442 | 442 | 4.3E-212 | – | |
| MobiDBLite | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 442 | 442 | 4.3E-212 | – | |
| Gene3D | 63 | 98 | 36 | 2.7E-7 | ||
| CDD | 66 | 106 | 41 | 5.78378E-6 | – | |
| Pfam | 67 | 96 | 30 | 1.9E-4 | ||
| SMART | 68 | 102 | 35 | 3.2E-6 | ||
| Gene3D | 101 | 299 | 199 | 3.5E-35 | ||
| SUPERFAMILY | 109 | 287 | 179 | 8.04E-37 | ||
| ProSiteProfiles | 113 | 294 | 182 | 24.137 | ||
| SMART | 127 | 290 | 164 | 2.3E-29 | ||
| CDD | 130 | 286 | 157 | 6.01252E-32 | – | |
| Pfam | 130 | 265 | 136 | 2.4E-20 | ||
| MobiDBLite | 294 | 354 | 61 | - | – | |
| MobiDBLite | 309 | 329 | 21 | - | – | |
| MobiDBLite | 339 | 354 | 16 | - | – | |
| MobiDBLite | 383 | 412 | 30 | - | – | |
| MobiDBLite | 383 | 405 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi5g1v0261200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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