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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0262400 |
| Transcript ID | LotjaGi5g1v0262400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein TRANSPORT INHIBITOR RESPONSE 1; TAIR: AT3G62980.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1; TrEMBL-Plants: tr|A0A072VML5|A0A072VML5_MEDTR Transport inhibitor response-like protein; Found in the gene: LotjaGi5g1v0262400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57124771..57128873) extracted from Lotus japonicus Gifu genome v1.2.
GCCCATAACTAATTCTCCTATCAGAAGCGAGAATAGTTAATACAACAAGAGGAACGGTCTCCCAGAACAGAAACTGCCTA CGTTATTTATAAGCCGACTTATACAACTTATCCGCCATTGTGTTACAACTTATAAATGCACAAAGCAATGAAACCTCCCG ATCCCGGTGAAGAAGAAGTTGAAGGATTGAAAGTATCTCTGCACTATAAATCAGAATTGCGCCAAAACTACCGTAACAGA GGAGGTCTACGACCGTAGAACAATCAGACACACATCGAAAGAATCCGTCTCTTGAGATCTAGCAGTAGAATAGCAAAATT ATGATATTCCCTTCCACACACCCATAATGGTAGACATGATCACACCTCATGAAAACACCATATATCCATGATCCGTCCAC GCTTTTTTAGTTATAACTCGTGAGAAAATCCACCTTTCCTTTCTCGTCCATTTCTCCCCCACCAAAAGATAAGATCACCA TCTCACACCGCCCATCCAACGGCCCCAATTCCCTCCCCTCCACGTGTCTCCACCACAATCTCCGATCACACTCTCTTCTC AATCACCACACCACCTATTTAACCCTAGTTACTTTCTAACCTCACCACCAGGTACATCACAAACTCTCTCTCTCTCTCCT TATCCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGAAGCTACAACAATGGCGTCTCAGATCTAACAGCGAGTGACCCTTCG TTCGCTATGCAGAGAGTAGCGTTCTCCTTACCGGAGGAGGTACTCGAGCACGTGTTCTCGTTCATCGATAACGACAAGGA CAGGAGCTCGATCTCGCTGGTGTGCAGGTCATGGTACGAGATCGAGCGATGTTGCCGGAGAAACGTCTTCGTCGGAAACT GCTACGCCGTCAGCCCGGAGATGGTGGTGAAGCGGTTCCCGAGGGTGAGATCCGTCACGCTCAAAGGGAAGCCACACTTC GCTGACTTCAATCTGGTTCCTGACGGTTGGGGCGGTTACGTCTCGCCATGGATCAAGGCCATGGCTGCTGCTTGTCCCTC GCTGCTTGAGATCAGGCTCAAGAGGATGGTTGTTACCGATGATTGCTTGGACCTTATTGCCAAGTCGTTCAAAAACTTCA GGGTGTTGGTCCTGATCTCTTGTGAGGGTTTCACTACTCATGGACTCGCTGCCATTGCTGCCAATTGCAGGTTTGACATT TCCCCTCTCTTCGCATCCACAGTTTCTTCATGTTATTGCGCACACATGATGCAGATTATAGGTGTTTTCTTCTGATTGGG GAGTAAGATTAGTCAAATTATAGTCCGAATTATATTTGATTAAATTGCTTTTTTCTTGAATAATGCGTATAATTATGGAT TCCTAAACTGAGTAATTTAACCATTTAATTGGGTTTTTGACGAGCTTTTTGTAGTGGGGAGTTATGGTGAATCTGATAGA ATAGAACTACTGATTCCCCTTTTTGTAGAATGTTAATCTTATTGTACTATAGGGTGTGTATAAAATGTTTAATATGTACA TGATGGGTTATTGTGAATGGGAATGGTGAAGAAAATTTGTATGATTTTTATGGGTTCTGAACTGGATTTGGTGCCTTTTT AGCTTGTTATTGATAAATGAATCTGCTGTATGTTTGTGGGAATTGTAGGAATTTGAGGGAGCTGGATTTGCGGGAGAGTG AAGTGGAGGACATTTGTGGGCACTGGCTAAGCCATTTTCCAGATTCCTACAATTCGTTGGAATCGCTGAACATCTCTTGC TTAAGCAATGAGGTGAATTTGCCGGCGCTAGAGCGCTTGGTTAGTAGGTGCCCCAACCTGCAAACGCTCCGCCTTAATCG TGCTGTGCCCTTGGATAGGCTTACCAATCTGCTTCGCGGGGCTCCTCAGCTGGTTGAGTTGGGGACTGGAGCTTACACAG CTGAGATGCGGCCGGAGGTCCTCGCGAACCTGACAGAAGCGTTTTCTGGATGTAAGCAATTGAAGGGCTTGTCTGGCTTT TGGGATGTGCTCCCATCCTACCTTCCAGCTGTTTATCCTGTCTGCTCTGGGCTGACATCACTGAACTTGAGTTATGCTAC CATCCAAAGCCCTGATCTTATCAAACTTGTTAGTCAATGTGGGAGTTTGCAGCGTTTATGGGTATGTCTGATTCATATGA TGTTTTTTCTTTATTGCATGTTTCATTGTTATGTTTGTATGGTGTATCTTGGTTCATTGTCCCAAAATTGTACTGTTAAT TTCTATGCTGATGAAGGTGATTGCTATATAGGTGTTGGATTACATAGAAGATGCTGGCCTTGATGTGCTTGCTGCATCAT GTAAGGATCTGAGGGAGTTGAGGGTGTTTCCTTCGGATCCATTTGGGTTAGAGCCAAATGTAGCATTGACCGAGGAAGGT CTTATTTCTGTGTCTGAAGGCTGCCCCAAGCTACAGTCAGTTCTATATTTTTGTCGTCAAATGTCCAATGCTGCCCTAAA TACAATTGCTCAGAACAGGCCTAATATGACTCGTTTTCGACTATGTATTATTGAGCCTCGAACCCCTGATTATCTTACCC ACCAACCTTTGGATGCTGGTTTTGGAGCTATTGTTCAGCATTGCAAGAATCTACAGCGCCTTTCCCTCTCTGGGCTTCTT ACTGACCGTGTCTTCGAGTATATTGGTACTTATGCGAAGAAGCTTGAGATGCTTTCTGTAGCTTTTGCTGGAGACAGTGA TTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTCAGGAAGCTGGAGATCAGGGACTGCCCATTTGGTGATAAGG CCCTATTGGCCAACGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCGTGCCTAGTGAGTTATGGTGCATGT AAGCTGCTGGGACAAAAAATGCCGAGACTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATACAAGGCCAGAGAG TAGTCCTGTTGAGAAGCTATATATATACAGAACCATTTCTGGGCCAAGAGTGGACATGCCTGGCTACGTGTGGACTATGG AAGATGATTCTGCATACCTTAAATGATTGTGCTACTCAATAATGAGCATTCGGTGTGGGACTCGTCGACTGCAGGTACAT GCTCAATGTTCTACACAATAGTGAATTAAAACTATTGAACTGGCCTATGTTGTAGCTGTTGCGGTTGGTGTTTGAGCTAG GTACAGGAGGAGGGAGGGGTATACAGAAAGGCTTGAGCTCGATTGCCATTAATTTTACACTTTGGCTGAGCTACTAGATA ACCAATTCTGATCAATAAAACTGGAACTTTGTTATTGTTGTATCTTGTATGAGATAGAGTTGTTGTATTATTTTTCAGAC TACTATCATATTTTAAGGACTTCTGCATAACTTATTTATGCATGTTGCCTTAGTCTTGTAGTAAGTTATTGGTGGACTTA TTGTCATTTTTAAACTTTCGGGAGGAATAAATTTCATATTCACATTTTATTTCAACCACTTGGTTTGTTGATTGCAATGT TGATGCATCTCATGTAATTTTGCCTTGCTTTCTCTTTCGATTCAGAGCTGTGGAATAAACAAAAATACAAAATCGAAAAT CCTGTAGGGAACCAAAACTGGTGAATGTAATATTAGTAGAGTTGTAGATTAGAGTGCAGGTGAAAATGGAGTGTCTTATC CTCTCTGCAAACGGTGCTCTCTCTCAGACTCAGTAGTAGCTTTAAGGGTTTGAGCTACTTAAAAGAGAAAGTAAAATGCC CTTAAAATTGGGGCAATTAGCCTCTAAAAATAGAAGAGGCCAATAAAACAGTAACTGCAGACTGCTGTAGGAAATAGCCT CAGATGTGGTGACACCTGCTTTTTTATCGGGTAGAGTGAGTATGAGAGCCTCGACTGGTACGCCACGTGAAAGATTCGGT GTCCACAGCTTTTTACTGCATTCACCACCTACCTGATATGCAGGTGAGAGTGAATAAGTAATAACCCAAGTCCTCACAGA ACCATAGGTAGGGGTAGCCTTGTTCAAAAGTTCTATTGAAATTTCCTTAAACAAGTAAAAGAACTAATTGGACCGTTAAG TTCCTATTTAGCTTTAACTACCC
CDS sequence (LotjaGi5g1v0262400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAGAGTAGCGTTCTCCTTACCGGAGGAGGTACTCGAGCACGTGTTCTCGTTCATCGATAACGACAAGGACAGGAG CTCGATCTCGCTGGTGTGCAGGTCATGGTACGAGATCGAGCGATGTTGCCGGAGAAACGTCTTCGTCGGAAACTGCTACG CCGTCAGCCCGGAGATGGTGGTGAAGCGGTTCCCGAGGGTGAGATCCGTCACGCTCAAAGGGAAGCCACACTTCGCTGAC TTCAATCTGGTTCCTGACGGTTGGGGCGGTTACGTCTCGCCATGGATCAAGGCCATGGCTGCTGCTTGTCCCTCGCTGCT TGAGATCAGGCTCAAGAGGATGGTTGTTACCGATGATTGCTTGGACCTTATTGCCAAGTCGTTCAAAAACTTCAGGGTGT TGGTCCTGATCTCTTGTGAGGGTTTCACTACTCATGGACTCGCTGCCATTGCTGCCAATTGCAGGAATTTGAGGGAGCTG GATTTGCGGGAGAGTGAAGTGGAGGACATTTGTGGGCACTGGCTAAGCCATTTTCCAGATTCCTACAATTCGTTGGAATC GCTGAACATCTCTTGCTTAAGCAATGAGGTGAATTTGCCGGCGCTAGAGCGCTTGGTTAGTAGGTGCCCCAACCTGCAAA CGCTCCGCCTTAATCGTGCTGTGCCCTTGGATAGGCTTACCAATCTGCTTCGCGGGGCTCCTCAGCTGGTTGAGTTGGGG ACTGGAGCTTACACAGCTGAGATGCGGCCGGAGGTCCTCGCGAACCTGACAGAAGCGTTTTCTGGATGTAAGCAATTGAA GGGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTTTATCCTGTCTGCTCTGGGCTGACATCACTGA ACTTGAGTTATGCTACCATCCAAAGCCCTGATCTTATCAAACTTGTTAGTCAATGTGGGAGTTTGCAGCGTTTATGGGTG TTGGATTACATAGAAGATGCTGGCCTTGATGTGCTTGCTGCATCATGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCTTC GGATCCATTTGGGTTAGAGCCAAATGTAGCATTGACCGAGGAAGGTCTTATTTCTGTGTCTGAAGGCTGCCCCAAGCTAC AGTCAGTTCTATATTTTTGTCGTCAAATGTCCAATGCTGCCCTAAATACAATTGCTCAGAACAGGCCTAATATGACTCGT TTTCGACTATGTATTATTGAGCCTCGAACCCCTGATTATCTTACCCACCAACCTTTGGATGCTGGTTTTGGAGCTATTGT TCAGCATTGCAAGAATCTACAGCGCCTTTCCCTCTCTGGGCTTCTTACTGACCGTGTCTTCGAGTATATTGGTACTTATG CGAAGAAGCTTGAGATGCTTTCTGTAGCTTTTGCTGGAGACAGTGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGAC AACCTCAGGAAGCTGGAGATCAGGGACTGCCCATTTGGTGATAAGGCCCTATTGGCCAACGCTGCAAAGCTGGAGACAAT GCGATCCCTTTGGATGTCCTCGTGCCTAGTGAGTTATGGTGCATGTAAGCTGCTGGGACAAAAAATGCCGAGACTTAATG TTGAAGTCATTGATGAAAGAGGACCTCCAGATACAAGGCCAGAGAGTAGTCCTGTTGAGAAGCTATATATATACAGAACC ATTTCTGGGCCAAGAGTGGACATGCCTGGCTACGTGTGGACTATGGAAGATGATTCTGCATACCTTAAATGA
Protein sequence (LotjaGi5g1v0262400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQRVAFSLPEEVLEHVFSFIDNDKDRSSISLVCRSWYEIERCCRRNVFVGNCYAVSPEMVVKRFPRVRSVTLKGKPHFAD FNLVPDGWGGYVSPWIKAMAAACPSLLEIRLKRMVVTDDCLDLIAKSFKNFRVLVLISCEGFTTHGLAAIAANCRNLREL DLRESEVEDICGHWLSHFPDSYNSLESLNISCLSNEVNLPALERLVSRCPNLQTLRLNRAVPLDRLTNLLRGAPQLVELG TGAYTAEMRPEVLANLTEAFSGCKQLKGLSGFWDVLPSYLPAVYPVCSGLTSLNLSYATIQSPDLIKLVSQCGSLQRLWV LDYIEDAGLDVLAASCKDLRELRVFPSDPFGLEPNVALTEEGLISVSEGCPKLQSVLYFCRQMSNAALNTIAQNRPNMTR FRLCIIEPRTPDYLTHQPLDAGFGAIVQHCKNLQRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSGCD NLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPRLNVEVIDERGPPDTRPESSPVEKLYIYRT ISGPRVDMPGYVWTMEDDSAYLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 44 | 44 | 5.2E-23 | – | |
| PANTHER | 5 | 574 | 570 | 0.0 | – | |
| PANTHER | 5 | 574 | 570 | 0.0 | – | |
| SUPERFAMILY | 7 | 39 | 33 | 1.22E-7 | ||
| Pfam | 7 | 46 | 40 | 4.3E-18 | ||
| SMART | 8 | 47 | 40 | 8.8E-4 | ||
| SUPERFAMILY | 30 | 533 | 504 | 2.12E-36 | – | |
| Gene3D | 45 | 575 | 531 | 2.7E-186 | ||
| Pfam | 65 | 111 | 47 | 5.2E-25 | ||
| SMART | 103 | 127 | 25 | 580.0 | ||
| SMART | 128 | 153 | 26 | 44.0 | ||
| SMART | 154 | 191 | 38 | 400.0 | ||
| SMART | 370 | 394 | 25 | 2.0 | ||
| SMART | 430 | 453 | 24 | 66.0 | ||
| SMART | 479 | 503 | 25 | 40.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0262400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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