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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0264400 |
| Transcript ID | LotjaGi5g1v0264400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein 1; TAIR: AT3G52190.1 phosphate transporter traffic facilitator1; Swiss-Prot: sp|Q8GYE0|PHF1_ARATH SEC12-like protein 1; TrEMBL-Plants: tr|I3T879|I3T879_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0264400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57393380..57399688) extracted from Lotus japonicus Gifu genome v1.2.
CAAACAAACAAACATATCACCTCAATAATTTAATTTAATTAATTTAATCTTCTCTAAAGTCTTAATATCCCAAAATTCAT CATCATCATCAACACCCTAAAATCTAAACCATAGTCTAAACAAACAACATCGCATGATAAAGAGAGACATCACAAGCATG CTTCACATTACACTCTCTGCACCTTGTTTCATTAAATAATCATCAAACAAACGCAACAAGGCAAAGCCACTTTCTGTCCT ACTTGCACTCATTGACCCTAATTTCATTTTCTCTCTCTATCTCAGATATTTCTATTTATGTGTGTTGAATTGTCTGAACA ATCAAATTCAGCGATCTCAGAAGAAGAAAAAAAGCTTGATTTCGAGTACCCAATTGGAAAAAGAATCGAACTTTGAATCT GGGTATCCAGCTTTTGAACACTTGGATGGAGAATGATTCAGGGTCACCGCAGGGTCCGGTTACGTGCGGGTCGTGGATTC GGAGGCCTGAGAATGTCAATCTAGCGGTTCTGGGAAGGTCCAGGCGTGGAGATTCTTGTCCTTCTTTGCTTCAGATTTTC TCATTCGATCCCAATACCACTTCCTTGTCTACCTCCCCTCTGGTATTCATCTCAATCACTATATGTTTGTATAGACAATA GAGTGTCCTATTCAAAATATTAATCTCTTTTGTGCATACCCTTTTCGTTTTAAAGAAACGGTTGTTGTTGTATTTTTTTT TTATATGGGTTGTGTTTGTTTATGTGTGTATGGTATGCTCTATAGAGTAAACTGCATGTAATATGACTAGTTTGGTGCAT ACCCTTTTGGTGTCAGCTGAGAAATAGTTTTTTTTTTTCCTCCCTGAAGCAGATAGTTATGCACAATTTCTGTTGCTGAA AAGGAGTGAATGATAAACTTGTCCCTCAATGTGTAAAACGTCAGTCAAGTAAGGTCATACGGGTACTAACTTGGCGTATG TTTTAGATGATCAAAACTTTCAGCGGGGCCTAACTTGATTGGCGTTTTACACATTCAGGTCCAGGGACTTTCAAGCTTAT TTTCTTTTTCTATGGACTAACTTGTCAGTCCCAAAATCTTTCAGGGACCAAATTGACCATTCACTTCCACTGAAAAGTGT TTTTAGTGTTGAGTTTCTGGATTGCTGAATGAAAATGCAGTTTGGATGGGGCTTTGGTTCTAATGACCTTTTTGTTTGAT TGCTATTTCAGGCCACTTTTGTGTTAGAAGCAGAGGAAGGTGATCCTATTGCTATTGCAGTGCATCCTAGTGGGGATGAT TTCCTGTGCTCTTTGAGCAATGGTAGCTGCAAGTAAGCTTAATTTGTACAAGCTTTTTTGGATTAAAACTTTGCTCTTCT ATCTGAATTCATCTATTGGAAAGTACTTTCATAATTTGTGTCCATGTTGCAATTCTCAAAACAATTTACTGCCACATTCA ATATTCTCAGGTTAAGAAGTCCAACATTTTATCTTCCTCTAACTATTTAAAGATTTGAAGGACAATCTAAAACCGTAGAC ACATTTCTGCAAATTTTCTTTCTTTCTTGTTCTTATTTCCGGGAGCTAGGGGAATGTATGACATAATAATTGTAGTTGTT TCTTGAACGTAGCTAGCTGATATTTGCCTTGAGTTATTATTTTGTCCTTTGTTGGATAATAAACTGAACTTATGTAATTG AAGTATTTCTTCATGGCTTGCAGGTTGTTTGAGCTGTATGGTCATGACAAAAACATGAAGCTCATGGCCAAGGAACTGGC CCCTCTACAGGGTATTGGTCCCCAGAAATGTATTACTTTTAGTGTTGATGGATCTAAATTTGCTGCTGGGGCATTGGTAA GCACCACCATCAAGTCCAACCAATTGCTTTTATTTTCTGTTTGACAATTTGAGTTTTTCTTTTTAGAATTTGATCCTTGA TGTTTGACTTCTGTCCTTAACAATTGCAGGATGGACATCTAAGAATTATGGAGTGGCCTAGCATGCGCATGATCTTAGAT GAACCAAAAGCACACAAATCTGTCCGGGATATGGATTTTAGGTAGCATACTAAACAAGTCTACGTGGATCCTTCTAAAAG ATACATTAATGCAAGAAACCAGTAGAATTGTAACAAATGCTTGATAAAGTGGAGCTAGAGTAATCTTTCTCTGGTTCTTA CAACCAGATATGGATAATTTTTCTTTGCACTGTCATGCCTGCAATAATTTGGCTTTGTAGATATGATTTTTAAGACAAGA AAAGCATGCTTAAATTATAAATATCTTCATTCTGAAACTTTGATGACATTGATACTTACTGTTTTCCTTCATTTTGTGCC GTACTTCAGTCTAGACTCAGAATTTCTGGCTTCAACTTCTACTGATGGTTCTGCGAGAATCTGGAAGATTGAAGATGGTG TTCCTTTGACTACTTTGTCTCGCAACTCGGTATGTTGTATTTGATTTAAGTACCTGTGGCAAGACCTGTATGCAGTTAAT TGAACCACTTGATCCCAATTTTTCTTTTTGTTTCTTTAGGATGAAAAAATTGAATTATGTCGCTTTTCCAAGGATGGAAC CAAACCATTTTTATTTGGCTCGGTTCAGAAAGGTATAAGAGTATCTTATTTCAAGTATATTCTTATAGTACTCATTTCTA TATTATTTTCTATATATTCTTCAATTATCTTTTGATCAAGAATGCATGGCCTTTATTATGGATACTTCTATCTTTGAGCA GGTGATAAGTCTTTCACTGCAGTATGGGACATGAGCACATGGAACAAAATTGGACATAAGAGGCTGCTTAGAAAGTCTGC TTCTGTAATGTCCATTAGCCACGATGGGAAATACCTTTCTATGTAAGAACCTCTAGTCATCTTTTAACTTTTGGGCTTAT GAATGGTCGTTCAACTTGTAGCTTGGGCACAAAGTCAATGCCCTGGTCAATTATTATAATTTTGGGTGTAGGGGGTGGGA AATTTAGCTGTTGAAAGAAGAATAAGTGATTGCTTGTTGTGTGGTTATAAATAACTATGTTACTGGAGTCTGTGGTACAT CAGCTATAAACTACTCTTATATTTTGATTGGAAAAATTTGAAGTCCTGTAACTGATTGCACTTTACTTGTATAACACTAA ATATTCAGCTCATCAGACTTTTGTAATTTCAGGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAATTAAAAAAATGCA GATACACCATTATAGCAAGAGACTACACCTCGGTACAAATATTGCAACACTTGAGTTCTGTCCTACTGAAAGGTAAATCT CTATGCAATGTTACTTTAATTTGTCACTTCTACTGGTAAATATCATTTTTCATTAACAAGAAGTTTGGGTTAATCTATTT GTTTGAATATTGGAATATAAATTAGACTATGAATTTATAGACTTTGAGTGAATTGCTCAAACCAATTGTTTCCATTTATT GGATATAGAAGTAATAATCTAGGAACATCATAGTGTTAGTCTATGTTTGGATACGTGTTGGAAACAGTGCAAACAGGTGT TAGCACTGACTTAGAGACAAAAAGTTAACTATGATCTTCTTATAGATTAGGATGAAAGTCTGCTCACGTTGCACTCAACT GATACACGTTGGCATCAGTGCAAACTGACGTTAGCACTCACTTCGAGATAAAAAGTGAATTTTGGACCTCTCTATGATTG AGAACTAAAAGTACTTTCGCTTTAGGTTTAACTTGTATACAAACACACACTTAGTTGTTAGGGCATAGGGCAGTTTTAGC TAATCTGTAAACATAAGAAAGAAGAATTCTACTAATCCTTATGATACTTACAAAACAAAAAGCTGGAAGCTAAGGAAAAT CTTTTAATCATAAAAATTAAAAAGACTGATGGTTATGCAAACAACTAAATGATTTGCAATAATATGAATATGGCAATATG CTCTATCAACTGTAACAACATCAGTAATTTACCTTGGGTCTGCACTTGTTTCTTTTTATTGGCTCCCACAATTGCTTTTG AAATCCTGAAATGAGTCCCCACTCCCACCCCCACTACCTTTCTTAAATTTCTGGTCCTTCATGTAGGTAGAGAATTCTAA TGTCAGTGGTTCTGAAATCTCTGAATCCCATATTTAGAAGCTATAAATTTAGAATGCATTGAGTGGACAATTAGCTATGC GCATGATAAGTTGCACTAAGAATATTTAGTCATGTTGTGACTTTAGCTTTAGTTTGAGAAAGCAAGGAAAATCTGACAAA AGGCAAGCATCACAGATTCATTCTTTTTAAGAAAGGGGTCTATAAACTTGGTGGGATCCTGACCGTAAATAATAATACTG AATAGTGAGACTGTGTTTGGTCTGAACAAGGTACAACGGTACAACCTAACTAGCACCTTAGATAGAATGTGGATATAGTA TAAGTTATACTTCCCCAACAAGCATGTGTAACATTTGCGATGAGTTCTTTTCCATTCTACCATTAGCCGGAGCAAATGTG CATTTTTTAAATTGAATCTTGATGTCAATTAACCAATCTCAGCTAAAAGCTTATGCCATTGATATAAATTTTATTTATAG ATTATGGGTGTGTTTGGGTAAACAACTTAATTAAGCTTATGCATAAGCTAATTTGATAAACTTATTCCAATAAACTCCAA ATATGTTATAAGTAGGTATAAGCGCTTATTCATAAACTAGAATAAGAGCATCTTATGAAAATAAGCTCAAAACAACTTAT AGGTAGGATAGATCATAAACTATTTACACAAGCTTTCTAAGACACTTACATAAGCGCTCAATCGCTTATGCTATAAGATA ATCTCAAATTAAATCCTCCAAACGGGTCTGTATCTAACAAACCTCCTCACATTACCTTTTTTACTTGAAGTTTGATTGGA TGGTCATAGGCAGTAATATCATACCTGGAAAAAGAAACTGTTAGCCTAATAAATCCATTCTTTTGGTCCTGGGCTCTTGG CTATATTCACCTAGTCTTTTATTATTTCTATGCAGGGTTGTACTTACTACATCAATAGAATGGGGAGCTCAGGTCACTAA ATTGAATGTACCTAAAGATTGGAAAGGTTCTCTCTCTCTCTCTCTCTCCCTCACACACACACAAACACACACACACACAC ACAAACACACACACGGATTATGATTCTCTCATGTCACATGACACAGTCATGTGAAACTTTGTGTCTATCTTTCTCTTCAA AAATATTTAGAGTCTCACCTGCTTATTAGGTATGAAGAGATAGAGATATAGACACAAAGTTTTAACATGACAGTCTCATG TGCCGTATCCACATGAGAGGATCCAGATCACACATACAAACACACATGTGAACAGATACCAACATTGACTCCTCCCTTCT GTGGCCATACTATAATGTCTAATCAATTTAAATTTTCCTGTGCGAACCTGCAGAGTGGCAGATCTATGTGGTGCTTGTAG GACTATTCATAGCATCAGCTATTGTGTTCTACATATTCTTTGAAAACTCTGATTCATTCTGGAACTTTCCCATGGGAAAA AACCAACCAGCAAGACCAAGGTTGATAAGAGATCCCAATCCCCATTCTTTTCATGATCAAATTGACATTGAATTGTGATG ATCAGTAGATGTGACCACATTGACATTATTGACCCTGTCCTCAATGCTGTTGGATTGGAAGCTGTCAAGTGGTATCAACA TTCATCTCAGGATTACACACCTAGATGTAGGCTGTTGACTGCATTACAAGCATTTACTTCCTTTTTCTTTTCTGGTGAAA ATTCCTAAAGGCCATTATTGATATGTAATTTTAATTAGAAAAAACTTTAGGAATAATCAAATTGTTTCTTCAAGTTTACA TGTTGCACTTGAGGCTGCATGGTAACTATGAGCATGTTTGTTTTCACGTTGAAATATTTTAGAATTAATTTTCTCTTCAC GAAAGCTACTTCATGTTGCTTGTTTCAGAAGCACTTCTCAACCTAAGTGTGAAAATCTACCAAGTTTCCAACGTGATGAG ATCCATTGAAGAGGCGTGTATGTGGATATCTTTCCATTTTCCTTTTATTTTGCTATCACACAAAATATGATAAGAATATG TCAAAAATGTGTCTGTCATTTTTTATGTTCGATCATAAGTCATTCAAAATTTATTTAGAGAACTTTATAGAATGTAAATA TCAGTGTAGGAGTTGTGCCTTAGCTTTTGGTTTTGGATAACAGTTTGCAAATTATTGTTTTCACCCGTTTAAATTGTGGT GTGACTTAACGAGAAAGTGTGTTTTACTGCTTTAACTCAAATCATGGAGTATACTAAACTGATATTTGA
CDS sequence (LotjaGi5g1v0264400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATGATTCAGGGTCACCGCAGGGTCCGGTTACGTGCGGGTCGTGGATTCGGAGGCCTGAGAATGTCAATCTAGC GGTTCTGGGAAGGTCCAGGCGTGGAGATTCTTGTCCTTCTTTGCTTCAGATTTTCTCATTCGATCCCAATACCACTTCCT TGTCTACCTCCCCTCTGGCCACTTTTGTGTTAGAAGCAGAGGAAGGTGATCCTATTGCTATTGCAGTGCATCCTAGTGGG GATGATTTCCTGTGCTCTTTGAGCAATGGTAGCTGCAAGTTGTTTGAGCTGTATGGTCATGACAAAAACATGAAGCTCAT GGCCAAGGAACTGGCCCCTCTACAGGGTATTGGTCCCCAGAAATGTATTACTTTTAGTGTTGATGGATCTAAATTTGCTG CTGGGGCATTGGATGGACATCTAAGAATTATGGAGTGGCCTAGCATGCGCATGATCTTAGATGAACCAAAAGCACACAAA TCTGTCCGGGATATGGATTTTAGTCTAGACTCAGAATTTCTGGCTTCAACTTCTACTGATGGTTCTGCGAGAATCTGGAA GATTGAAGATGGTGTTCCTTTGACTACTTTGTCTCGCAACTCGGATGAAAAAATTGAATTATGTCGCTTTTCCAAGGATG GAACCAAACCATTTTTATTTGGCTCGGTTCAGAAAGGTGATAAGTCTTTCACTGCAGTATGGGACATGAGCACATGGAAC AAAATTGGACATAAGAGGCTGCTTAGAAAGTCTGCTTCTGTAATGTCCATTAGCCACGATGGGAAATACCTTTCTATGGG CAGTAAAGATGGAGACATATGTGTAGTTGAAATTAAAAAAATGCAGATACACCATTATAGCAAGAGACTACACCTCGGTA CAAATATTGCAACACTTGAGTTCTGTCCTACTGAAAGGGTTGTACTTACTACATCAATAGAATGGGGAGCTCAGGTCACT AAATTGAATGTACCTAAAGATTGGAAAGAGTGGCAGATCTATGTGGTGCTTGTAGGACTATTCATAGCATCAGCTATTGT GTTCTACATATTCTTTGAAAACTCTGATTCATTCTGGAACTTTCCCATGGGAAAAAACCAACCAGCAAGACCAAGGTTGA TAAGAGATCCCAATCCCCATTCTTTTCATGATCAAATTGACATTGAATTGTGA
Protein sequence (LotjaGi5g1v0264400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENDSGSPQGPVTCGSWIRRPENVNLAVLGRSRRGDSCPSLLQIFSFDPNTTSLSTSPLATFVLEAEEGDPIAIAVHPSG DDFLCSLSNGSCKLFELYGHDKNMKLMAKELAPLQGIGPQKCITFSVDGSKFAAGALDGHLRIMEWPSMRMILDEPKAHK SVRDMDFSLDSEFLASTSTDGSARIWKIEDGVPLTTLSRNSDEKIELCRFSKDGTKPFLFGSVQKGDKSFTAVWDMSTWN KIGHKRLLRKSASVMSISHDGKYLSMGSKDGDICVVEIKKMQIHHYSKRLHLGTNIATLEFCPTERVVLTTSIEWGAQVT KLNVPKDWKEWQIYVVLVGLFIASAIVFYIFFENSDSFWNFPMGKNQPARPRLIRDPNPHSFHDQIDIEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 330 | 330 | - | – | |
| PANTHER | 7 | 375 | 369 | 1.4E-203 | – | |
| PANTHER | 7 | 375 | 369 | 1.4E-203 | – | |
| Gene3D | 11 | 326 | 316 | 2.5E-43 | ||
| SMART | 55 | 96 | 42 | 7.9 | ||
| SUPERFAMILY | 67 | 332 | 266 | 5.86E-32 | ||
| SMART | 107 | 145 | 39 | 7.9 | ||
| ProSiteProfiles | 123 | 196 | 74 | 11.234 | ||
| SMART | 149 | 187 | 39 | 0.0019 | ||
| Pfam | 155 | 187 | 33 | 8.7E-5 | ||
| ProSiteProfiles | 162 | 196 | 35 | 10.375 | ||
| SMART | 232 | 277 | 46 | 42.0 | ||
| Phobius | 331 | 352 | 22 | - | – | |
| TMHMM | 331 | 353 | 23 | - | – | |
| Phobius | 353 | 390 | 38 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0264400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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