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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0264600 |
| Transcript ID | LotjaGi5g1v0264600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-like protein; TAIR: AT3G10530.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9P4X3|UTP7_SCHPO Probable U3 small nucleolar RNA-associated protein 7; TrEMBL-Plants: tr|A0A151T0U3|A0A151T0U3_CAJCA Putative U3 small nucleolar RNA-associated protein 7; Found in the gene: LotjaGi5g1v0264600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:57410270..57416504) extracted from Lotus japonicus Gifu genome v1.2.
AACCCAATTGCCATTGAAACTCACTCTGCAGAACCCCGAATAAACCCTCCCTCTCTCTCCGATTCACTCTGCGGCGTCGT TTCCGGTGGTTGTGGCGTGATTCCTCGGCGGCAAGATGGGCGACACCGATTCTCTTCCTCCTCCCACTGAACAAGTACGT ACACACCAAAACCCCCTTCGAACCGTTCTTCTTCAATCATTGATTTATTCTTCCTGTTACTTTTTGCAGGAAATTTCCAA TGAGCTAGACCTGAGAGTAAAGAAGTACCTCAGAGGAGAAGGTGCTAATTTGGAGGTAACAACTAACTATGAACCACCAT TCACATTCATTACATTACACTTCATGTTTTGTGCTTGCTTCAAAAAATGTTAGTTGTTTTTAATCTTTATTTATTTATGG ACTGTGTGGTTTACAGGGTTTGAAGGATAAAAAGCTCAAGACCCAACTTACTAATAGAGAGAAATTGTATGACAAATCTG CTAAAGCTGCTGCCATGGCTGAAAAGGTTTGTTTTTTGTTATTTGTTACGCGCCGCCGTACATTAGTGAGTTGATAATTG ATGTGGGCATGTTTGATTCCATTTTTCAATTCAGAGCTATGGTTTATAGTGGGATTTGGCATGATGAGGTGACTCGGTTT CATGCATTATGAATGAACCCGTTTGGATGCGGACCATAGAGGCTAGAATACTTATTGGAGCTTATTTAGTGCTTTTTTTA GATGATAAGTTCCAATAAGTGTTCTTTAGTCTGTATGGAAACAAGCTCTAACCCTTCAATGTTAGGGTTTTTACACTTTT AGTTCGTGGTGGATTTTATCGTTGAGCCTAGCCAAGTCAAATATTTGCTGGCATGGACTATACTCGATTAATGAATGAGT TGAAACCTGAGCTCAACTTGGTGTGTGAAGAATTTTATGAAACTTGAATTGTGTGCATGGTGAAATTTATGTAGTTTACG GACAAATTACTCAGACAAAGTTGTTACCTAAGCTGTTAGGTTGGTGAAGATAGTTGTTTTTACAATCAAAATGCCTTGCC TACCCTTATTTATGTTAAGAAAAGTATAAAGGCGTGTTGGCCTTACTCTTTCTCAATATATAATGCTGAAGAGGGGTAGG ATTAGGAATAACAAATGAGCACAAAAAATTTGCTGTGTAACAGTGTAGTTAAGGAAGATGTTATCCATGACAACATTTTG GAGTTAGTTCTTGCTCATTTATAAGTACAAGGGATGACATGACCAAGATGACCAGTGTGGTAATTTTCAACTCTACTTGA TGGGTAATAATACCTTTTTTCTTCTATTTAATTTTGCTTACAGTTAGCGACGGTTGCGAATCATCTTTTGGCATTCGTCA AGTTATTCACGACCAAGCTTACAAAATAGTTAATTGGTGCAAATAATCTTCAAGTAACATGTTACGTTTGAGTACATTCC TTAGTAAATTTTAACATTTATGATCTTCTTGATGCTAATTACCTATTCTATATTGATTTTAAGTATTTAATATAGGCTTA TGTGTGTTGAGAATCCACGGGGTAATTGGTCCATTGGATTTCCAATTTTCAGGGTAGCTAGTGTGTTGTTACATGCAAAA AAAAAAAAGTAAATTTCATCCTGTGTGATTTGTAGTCATTGATGTTAGTTGTTAATAGTTATCAGATATATTTGTACCGT TACATGCTTTTGAACTCCTATGTTACTGCCTTTCTTTTTTTATAAGCTCCTGCCTTTCTAATAATCTAATCACAATTATG CAGTGGCTTATGCCAAGTGAAGGAGGTTATCTGGAGGCTGATGGTGTGGAGAATACATGGAGGATCAAACAGGAGACAAT AGCTTCTGAAGTAGATATCTTAAGCTCAAGGAATCAATATGATATTGTTTTACCAGGTACTATCAATTGATTGGTAATTG TTCATATTTTTGTTTAGGTTGGAATTATGTCTCTGATGTAAGCTGTAACATAATATAAGTAATGTTTTTTTTTCCTTCCA TATTTTAACTTTTAGGTTTTGATGCAATATGCACCGACTCTTGTGTCATTACTCGTTTGTTCATTCAAGTAGAAGTTCCT TTATGTACTTGTTGGAGAGGGGTAGTATTAAGGATAAGTAGAATTGTAGAAATTAAATAAGAATTCATTACCTTTTTTCC CACCGTCACGTGTTGGTGGCCTACACGGCTAATCAACTATATTATGAGCCAATGATATTGATCTGTGTGGTTGAGCGGCC AATGATATTATGTTGTCTTATTTTATAGTCAAGAATGTGAAATTTTTTGAGCCAATAATATCTTAAGGTTTGATTATTTG TATCGAAACAGCAATACCTTCAGACTTGGGGTGAATTGTTCTCTGAAGGTGACTGGTTGGGCATATGAACTGTGAAGGGA AAGATTTTCTGTTTGGGTGTTCTGTTGGTAATTTATCTAATCATGAGCCATAAGGCATTCATTTACTGTGGCAAGGAGTG TGTAATATATGACCCATAATTAATCTTGATATAGTGATTATTTCCTGTAAGTTCTTTGATCAGTATATTTACGTATAGTT CAGTAATATTTTGCAATGTTGGGGCATGGTCTGGAAAGGAATTATTAAGTTTAGTTTCTTTTTATGTGCTCAAGTGATGT AAAATCCAAGTTATTTGGCTGCAAAGCCCAAACATTGTACTAGAGATGAGTTAGATCTTTTACTATCAATTCAAATACAA ATGAGTTTGAAAGCAAATCTGTTTTCTTCATTAACCTCATGAGTTGGTGGGACATGGTATGAGAAGCATGATGTACTAAA TTTGTTTTCATTTTCTGTTCTCACATGATGAAAATTCCAAGTTATTTGATTGCAAAGCCAAACTATTGTTCTAGAGGTGA AATAGATCTTCCACATTATAATGAGGCATATGCACACAGAACCCTTCTTGAATGGAAATGGTTTTGTTATTTTCTTGATC TGCCCTTTATTGTGTTTCTTCACTGTCCATATTTGCAGAACTTGGTCCATATACTCTGGATTTTACATCAAGTGGTCGGT ATATGGCTGTTGGTGGGCGTAAGGGCCATCTGGGAATTGTGGACATGATGAGTCTGAACCTAATCAAAGAGTTTCAGGTA ATGCTCATTCATAGATGAGCTTGCTCCTAGGGTTTTACAAACTAATAGTTTTCTTGTTAACTTTTGTTTAGAACATAATC TGACTTTTTGCTTTTATTGATGATGCTCATCATGGCATCATTAAGTGCTGAGAATTTTAAGAAGCTCATATTTGTAGCTA CTGATAAAGCACTAAAGCAGCTTTTTTTAGGTTTTTTATTTTTAAAGAACTTATCTAATTATTATAAATTCTTTTGAGAA TGTATTTAAATTGAAAAGGCCCTTGTTTTTTATGAAAAAAGAAGTTACAAACTGGCCCTAAATCACATGCTAGCTGAGAT CCAAATTATTTAGATTTACAGAAAGTTATTCTTGACTTTGTTTTTCAGGTGAGAGAAACCGTGCGTGATGTGGCATTTTT GCATAATGAGCTATTTTTTGCCGCTGCCCAGAAAAAGTAATTTCTCTACCCTGTTTTGGTATCTAACTGTTCAATTTAAA ATTTTGGTTTTGTATATAATGATTCTATACAGTTACAACACAAAGCATCTCTGGATGGCAAAGTAAGAGTAATTCAAGGG GACTATGTTTTGGAAGTTTTTTAAAAAATGTAACATAACAAACTTATAAAAATGTCGGGGACATGGGTCCTCAATGTGTA TTGCACACTGACTCTGCCTGTTATATGTGCTTTCTGACACATAAAGTGATGTGAATACCTCATTTTGCGGTTATTTTTGG CATACTTTAGTCAATGAGGACATGCATTTTCATGATTTCCGAATACCTATGGTTTTATGTTTCTTCTTACATATTTCCTT GTACATCCTTCCCTTCCTTCCAAATGAAATTACAGCCAGGGCTTTATAAATCTTTAAGATTTTTACTTATGTCTATCTAT CTTATTTTGTAGTTGCAGAATGAGCTTAATCCATGTAAATCTTGTAAGATTATGTGTGGCTTAATATTTTGTCATTAGGA AAAGCTGATTAGAAATATTTCTCTCTGAATTTTTTTTATCTAGTTTTGTTTGAGGAAACACTCATCTTGTCATGACTCTA GAAATTTGGAAATTTGACAGGTACCCGTACATCTATAATCGTGAAGGTGTTGAGCTTCACTGCCTCAAGGTTGGTGTATT GCTTGTGCAATATTTTTAAATTCTCAACGTTTGCAATGCTTCTTTTGGAGTTGAACCATCCATTTTGATGTGCTGGAGAT TTAAGTTTCTTGTGTCGTCTGGTTGATATTTTTCTTTTGTTTTGGGATCATCATCTGAAGGTTCATTAAATTTCTTTTAG TAGTAGTAGTATTAGTAGTGTTGTTAGTGGCAGGAGGCAGAGAGCCAAAAACCCGCCATATTTGACCAATAATGATGGCG GGATATCGGCCATGGCAGAGAGCTAAAAACCCACCATGAGATACTGCTATGGCAGGTATTTGATAACATTAAGTACTAGT ACCTTCAAACAGAAAACGAGGGGAGGGGGGACTTGGCGCAATGGTAAAAAGTTGCTGCCTTGTGACTGAGGTCACGGGTT CAAGTCCTGTAAACGTCTTGTGTAAAAAACAAGGTAAGACTGCATACATAAGACTATGTGGTTGAACCCTTCCCCGGACC CCGCGCGTAGCGTAGCGGGAGCTTTATTGCACTGGGCTGCCCTTTTGTTTACTAGTTACCTACAATCCTGATTGTGATGT ATGGATCCAATAGGTAGTAGTAATGCTGCTTCAAATTGTGACATCCTAATTTGCACATATGTCCGTTTATTAATTGAGAT AGGTTAGTTTATAGAATAGGTGTTGCTGAATATTGGATTGAGGCTTGTCCGCTTTTTGAAATGTTTATAATCTCCTGAAA CTCTACTTATGAGCCTGATTTATTTCCTTTTTCCAGGAACATGGTTCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTT TCTCCTGGCTACTGTCAACAAATTTGGGCAGCTTCGCTATCAGGATGTTACGATGGGTACTATGGTTGGTAATTGTCGAA CTGGCTCAGGACGTACAAACGTGATGCAAGTAAACCCTTTCAATGCGGTTGTTTCTTTAGGTCACTCTAGCGGTACAGTC ACTATGTGGAAGCCGACTAGTTCTTCTCCTCTTGTCAAGATGCTATGTCATCGCGGGCCTGTCACAGCACTGGCATTTCA CTCAAATGGCCACTTAATGGCCACTGCTGGGCAAGATAAAAAAATCAAGCTTTGGGATTTGAGGAAGTTTGAGGCTCTTC AAACGTTACCAGGCCATGCAAATACTATGGATTTCAGTCAAAAAGGCTTGCTTGCTTGCGGTACTGGTTCATTTACCCAG GTTCTGAGGGATGTTTCCGGTACACAGAAGTACTCTAAGTACATGATGCATTCCATGGCGAAGGGTTACCAGGTAGGAAG ATTAGTTTTTCGACCATATGAAGATGTTCTAGCCATAGGGCATTCAATGGGGTGGTCAAGTATTCTTATTCCAGGAGCAG GGGAACCCAACTTCGATTCATGGGTTGCGAACCCGTTTGAAACGTCGAAACAGAGGAGAGAAAAGGAAGTGCGGTCTCTT CTTGATAAGCTTCCACCAGAGACAATCATGTTGGATCCCAGGAAAATTGGGTCGGTGAAACTGACAAAAAGAGAGAAGCC AAGCATGCAGGAGAAGGAGGCTGAGATGGAAGCTGCTGTTGAAGCTGTTAAGAGCAAGAAACTGAAGAAGAAAACAAAAG GAAGAAATAAGCCTGGTAAAGTGGCTCACAAAAAGCAAGAGGCAATTGGTAGAGCGAAAAGACCTTTCGTGGAGCAGAAA ATTCAGGAGGAGGAAAACATATCAAAAAAGAAACAGAAAACTACTGAGGGAGTTGAATTGCCAGTATCTTTACAGCGGTT TGCTCGTAAAAAACCATCATCATAATTAAACTTTGTCCTATGATGAACTCATGTATTTTTATTCCTTTTTATTTTTCTTG TTTTCTAAGCTCTTTATTTGTAGTTGTTTCTAGCCTTTGATGTTGATTATTATTGCCTTTCTGAGAAAGGCATATATCCA AATTTTGCCTTAAATTCCTCTTATAGTCATTGATTATAAAATTAATGATTGAAATTATGATTATACGCATATTTA
CDS sequence (LotjaGi5g1v0264600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGACACCGATTCTCTTCCTCCTCCCACTGAACAAGAAATTTCCAATGAGCTAGACCTGAGAGTAAAGAAGTACCT CAGAGGAGAAGGTGCTAATTTGGAGGGTTTGAAGGATAAAAAGCTCAAGACCCAACTTACTAATAGAGAGAAATTGTATG ACAAATCTGCTAAAGCTGCTGCCATGGCTGAAAAGTGGCTTATGCCAAGTGAAGGAGGTTATCTGGAGGCTGATGGTGTG GAGAATACATGGAGGATCAAACAGGAGACAATAGCTTCTGAAGTAGATATCTTAAGCTCAAGGAATCAATATGATATTGT TTTACCAGAACTTGGTCCATATACTCTGGATTTTACATCAAGTGGTCGGTATATGGCTGTTGGTGGGCGTAAGGGCCATC TGGGAATTGTGGACATGATGAGTCTGAACCTAATCAAAGAGTTTCAGGTGAGAGAAACCGTGCGTGATGTGGCATTTTTG CATAATGAGCTATTTTTTGCCGCTGCCCAGAAAAAGTACCCGTACATCTATAATCGTGAAGGTGTTGAGCTTCACTGCCT CAAGGAACATGGTTCAGTGTTAAGGCTTCAGTTTCTGGAAAACCATTTTCTCCTGGCTACTGTCAACAAATTTGGGCAGC TTCGCTATCAGGATGTTACGATGGGTACTATGGTTGGTAATTGTCGAACTGGCTCAGGACGTACAAACGTGATGCAAGTA AACCCTTTCAATGCGGTTGTTTCTTTAGGTCACTCTAGCGGTACAGTCACTATGTGGAAGCCGACTAGTTCTTCTCCTCT TGTCAAGATGCTATGTCATCGCGGGCCTGTCACAGCACTGGCATTTCACTCAAATGGCCACTTAATGGCCACTGCTGGGC AAGATAAAAAAATCAAGCTTTGGGATTTGAGGAAGTTTGAGGCTCTTCAAACGTTACCAGGCCATGCAAATACTATGGAT TTCAGTCAAAAAGGCTTGCTTGCTTGCGGTACTGGTTCATTTACCCAGGTTCTGAGGGATGTTTCCGGTACACAGAAGTA CTCTAAGTACATGATGCATTCCATGGCGAAGGGTTACCAGGTAGGAAGATTAGTTTTTCGACCATATGAAGATGTTCTAG CCATAGGGCATTCAATGGGGTGGTCAAGTATTCTTATTCCAGGAGCAGGGGAACCCAACTTCGATTCATGGGTTGCGAAC CCGTTTGAAACGTCGAAACAGAGGAGAGAAAAGGAAGTGCGGTCTCTTCTTGATAAGCTTCCACCAGAGACAATCATGTT GGATCCCAGGAAAATTGGGTCGGTGAAACTGACAAAAAGAGAGAAGCCAAGCATGCAGGAGAAGGAGGCTGAGATGGAAG CTGCTGTTGAAGCTGTTAAGAGCAAGAAACTGAAGAAGAAAACAAAAGGAAGAAATAAGCCTGGTAAAGTGGCTCACAAA AAGCAAGAGGCAATTGGTAGAGCGAAAAGACCTTTCGTGGAGCAGAAAATTCAGGAGGAGGAAAACATATCAAAAAAGAA ACAGAAAACTACTGAGGGAGTTGAATTGCCAGTATCTTTACAGCGGTTTGCTCGTAAAAAACCATCATCATAA
Protein sequence (LotjaGi5g1v0264600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDTDSLPPPTEQEISNELDLRVKKYLRGEGANLEGLKDKKLKTQLTNREKLYDKSAKAAAMAEKWLMPSEGGYLEADGV ENTWRIKQETIASEVDILSSRNQYDIVLPELGPYTLDFTSSGRYMAVGGRKGHLGIVDMMSLNLIKEFQVRETVRDVAFL HNELFFAAAQKKYPYIYNREGVELHCLKEHGSVLRLQFLENHFLLATVNKFGQLRYQDVTMGTMVGNCRTGSGRTNVMQV NPFNAVVSLGHSSGTVTMWKPTSSSPLVKMLCHRGPVTALAFHSNGHLMATAGQDKKIKLWDLRKFEALQTLPGHANTMD FSQKGLLACGTGSFTQVLRDVSGTQKYSKYMMHSMAKGYQVGRLVFRPYEDVLAIGHSMGWSSILIPGAGEPNFDSWVAN PFETSKQRREKEVRSLLDKLPPETIMLDPRKIGSVKLTKREKPSMQEKEAEMEAAVEAVKSKKLKKKTKGRNKPGKVAHK KQEAIGRAKRPFVEQKIQEEENISKKKQKTTEGVELPVSLQRFARKKPSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 525 | 508 | 1.0E-218 | ||
| Gene3D | 98 | 392 | 295 | 8.3E-31 | ||
| SMART | 99 | 138 | 40 | 60.0 | ||
| SUPERFAMILY | 111 | 378 | 268 | 3.66E-38 | ||
| SMART | 141 | 178 | 38 | 62.0 | ||
| SMART | 221 | 260 | 40 | 240.0 | ||
| ProSiteProfiles | 228 | 311 | 84 | 16.137 | ||
| SMART | 263 | 302 | 40 | 1.6E-9 | ||
| ProSiteProfiles | 270 | 311 | 42 | 15.354 | ||
| Pfam | 272 | 302 | 31 | 4.0E-6 | ||
| ProSitePatterns | 289 | 303 | 15 | - | ||
| SMART | 305 | 340 | 36 | 220.0 | ||
| SMART | 349 | 429 | 81 | 2.7E-51 | ||
| Pfam | 350 | 428 | 79 | 1.2E-33 | ||
| Coils | 445 | 465 | 21 | - | – | |
| MobiDBLite | 458 | 530 | 73 | - | – | |
| MobiDBLite | 462 | 476 | 15 | - | – | |
| MobiDBLite | 477 | 512 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0264600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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