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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0269500 |
| Transcript ID | LotjaGi5g1v0269500.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein, putative; TAIR: AT2G02080.1 indeterminate(ID)-domain 4; Swiss-Prot: sp|Q8GYC1|IDD4_ARATH Protein indeterminate-domain 4, chloroplastic; TrEMBL-Plants: tr|I1NHJ1|I1NHJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0269500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58281180..58286072) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAATAGCCAGGAAGATTAGTAGGTATGCTGAGTGAAATGTTTTCTTCTCTTCGTCTCTTTATTGCTTCTGTCTCCC TAAGATACTTCCTTTCTTGGTGTCTTTTGGATTTTAATTCTTGAGCTTTTTGTTTTTGTTTTTTGACAGACAACAAAAAA GCAAGGAAAAATTTAGCATATTTCAGGTCCTTCTTACTTCATTAATTTTCTTGTGGTTTTTCCCTCCCTCCTTTTGTTAA GAGACAAGGAAACATGCAATTGAATTTTCCCTTTAGCAGAAGGATTCAAACATTTGATGATAAGTTTCACTTTTAGTTCA GATTTGCAAAAACAGCTATGGCGGCGGCTTCCTCATCATCTTCACCATTCTTTGGAATCAGAGAAGAAAATTCAAGTCAG ATTACACATCTTCATCAATCCCCCACAGCTGCTTCCTCAGCCGCTCTCACCACCATGCCTCAGAAGAAACGGAGGAATCA ACCCGGAACACCAAGCAAGTACCTTAAGATGAATTTCATTACTTAAAACACACACACACACACACACAAATACAAACACC CTTTTCCATTATCTGTTGGTATACCTTCTCATTTCTCAAGTACAAAACACAAGGAAACCCTAAATCATGAATATGAGTTA GTGCTCTCTATTTCTTTGATTAACTGAAAAGAAGTTACTATGGTTGAGGTACATGCTTTCCTCCAAGTTTCTCATAAGCA TGAGATGAGACTTCTTGTTATAATTTTTTAATGTTTTTTGTTTTTACTTTTTTTCTACTACTACTCAAATGCATATATGG CTTTCAAAAGGATTAAAAAAAAAACTTAGTTCTTCAATTCTTGTGTATGTTCAAATTCAACAGGCAATTGAAGCATAGAA TTTTCTTTTCCTTCAAAAGAAAAGAAATTTTATTCATCCAAAACTTTCTGAGAACATTTCTATTTGATTAAGATATATAG CCAAAACTCCCACCATAGAATTTTCTAAAATTTGTTGTTTGGCATTATTTTTTTGGTGCAAAAAGGTCCAGATGCAGAAG TGATAGCATTGTCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTGTGCAATAAGGGGTTCCAAAGGGAG CAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAATCTAACAAAGAGCCAAGGAGAAA GGTTTATTTGTGTCCTGAGCCCACATGTGTCCATCATGACCCTTCAAGAGCTTTAGGGGACCTCACTGGGATCAAGAAGC ACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAGTCAGATTGGAAA GCACATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCAAGGTAACAACAACAACCCAG TTACTCTTAATTACTTAGTCTTGCCTACATGAAACTTTATACACATGATCAATGTCAGTCATAAATTAATTAAAATTGAA GAGTTTCCAACCTACACTAACAGTATGTTTGGATTAGCTTTTCTTTTATTATAACAAATTTTGAAAATCATTAGAAGCTA TTCAGAAAAGTTTCTGCCATAATTGATTCTGACATCAGAATCAATTATAAAATATTTTCCGACCTGCACTAATAGCATGT TCAAATCAGCTTTTTTTTTTCCAAAATTAATTCTAACACCCCAAAAACTACTTAAATAAGTTTTTCTTTAGATTAAATAA GTTTTTCTTTAGAATTGATTCTGACTAGCTTTAGAATCAATTGTAAAATAATTTTCAAACATGGTAACTCATTTATGAAA AATTAGGGTTTCTTATTGTGTGGTATATTTGATTATTTTACACAAAATAAAAGATTTGATAGCTTGGAGTTTTTTCATTA ATTATAACCATCTATCAAAGTGAAATATGTGAATTCAATCTGATAATTAATAAATTAATTGATCAGGGGATATAGTAAGG GGATTCTAGTGTTGCAGCTGAAAGTTATATATACTCAAAAACAAAATTGAGTAAAACATGAACAAGAGCTTTCTCCATTT CCTTGTTAGTTTGTGTATGGGTGTTAGTGGAGGTTATATGACAGGAGAATGCTCGCACGTGAAGTACACACTATTCAAAT AGAGTACTACAAAAAAAAATTGAAATGTTTTTTGAGAATGAAGGGAAAAAACAAGCAAGTTGAACTTTGGTTATAGGAAA CAGTGCCCACATCCATATTATCCACATTCACGTGTAGTTAAGCAGCATTGTAAGAAGGGGGCACAGGCACAGTGACACTC ACTGGGTTTGTTCTCACATGATGAGTTGGATGCTGGGTTTTTGTTCTCTTTCGTCTTGGCTTCTTGTAACTTAAAAAAAA ATATATAATTTTAATTTCTCATCATTAATGTGCCAAATATTATGTCACGTACATTTCTCACATATATTCTGAAAATTAAA TGTAGCAATTCTTTGATGGTACGCATGTCTTCAAATGAATTCTCTAGGTAGAAAATTGACAAGTATTGAGGTAGAGTGCA TTTATTGAGCTGGCCCCATGTTGTGGTATTTGATTATTGACTTTCATCAAAGTTGCAAATAATTCTCTCTTTTATTGATC AAAGACAGAACTCAAAGTGGCAGTGTGATTTGGATTTCTTGGTTTGTATCATATTTTGGCATAATCCCGGGACCCTCTTC TTCTGTTGTAGAGTTTTTTCCCCTTAATTTCAAAATAGTATTGGTTCCAATTGCAAAGAAATTTAAAAAAATCCCCTTAA ATTAAATCAACCTCCACTTTTTTTTATAATTATTTTTTGCATGTAGCTACTCGTTGGATTTGGTTGGTTATAATTGATGT ATCTAGAACAATTGTACATTTCCAAAATTCGTTAGGTTGGACATTCGTTAGGTTACCTATATTCATCATCGAAATAAATG AATGGCTTTCTTTTAGAATTTTAGGTGATGGTGTAATAGCATAGTCGTTTGTTAATGAGGAAAATATAACTACCCTATTC TCTTAGTAAACTCTAAATGCCACATGCATGTAATAATAGTTTAGGCCTTAACTGTCAAAAAAAAAAAGTTTAGGCTTAGT TTATACTTGGCCTGATAAATTCAGCTTTCTATTGATCCCCTAGTGCTAATTTATAGAACTACAATTGACCTTTGTAAGAT CTTGAATGACGAATGACATAAAATATACTTTGGATTTAGATTCGCTCTCGCCTCTCCCAGCCCTTTCCAATCAACGAATT AGCATAATTTCTTTAGTTTTATAAGTTGTTTAATGTTTGAATTAATCTTATTCATTGATTATAGAAATCGAAATACATGT ACTAATGTTAATTTCTTTGATTTTTTTTATATTTTTGCAGGCGTGATAGTTTCATCACTCATAGGGCCTTCTGTGATGCC CTAGCACAAGAAAGTGCAAGACTCCCAAATGGCTTAACTCCTTTGGGGACTAATTTGTATGGCACCCCCACAAATCACAT GACCTTAGGCCTCTCACAAATTGGCACCCAAATTTCTCAGCAGCTTCAAAATCACAACCAAAATGCCACTAACAACAACA CCTTGCGCCTTACCGGTGCCGCAAAGTTCGAGCATTTAATCCCATCTCTAAACCAATCCTCATCATTTGGAGTACAACAC TCACCACAGCAATCAATCCCTTCCTCAGCTTTCTTCATGACTGAACCAAATCAAACATTTGATCAAGAACCACACCAAGG ACCATTTTCAAACAAGAACCTAAATGGTTTGATGCAACTTCCTGATCTTCAAGGCAACAACAACACCAACTCAAATTCTC CTTCTAATCTCTTCAACCTCAGCTTCTTTCCAAATAGCACCATGATGGATCAATTCAACAATCACCAAGGAACAACATCA CTCTATATGAACAACAACAACAACAACCCTATCATCAGTGATCATCATCAAGTTGGTAACTCTGGCTTGTCTTCTTCACT CTTTGGAAACTCATTGCAACATGAAAACATGTCATCTCCTCACATGTCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAA TGGGTTCAACCGCCACAACCACCAAGGGTGCAGGTGGTTCTTCTATACTAATTAGAGGAATGAGTACTAGCTCATCAACC TATAATAATAATGATTCCAGATCTGACACTGAAAGGGACCTTGTATCTGATAACAACATTGCCACTTTTGGAAGTGACCA AAGAAGAGGGGAGGGTGTGAATGTGATAATGAGAACAAACATGGAAAATGACCGCCGCAATCTTCACGGATTGATGATCA ACTCTATTACCAACGGGAACAACACATCCATATTTGGTAACATGCAAGGGAATGAAAAGTTGCCACAAAATCTTGATTTG AGTTTTGGAGGTTCTGACAAGTTGACGTTGGATTTTCTGGGTGTTGGAGGAATGATGAGAAACATCAATAGTGGTGGTGA ACATCAACAACAACGTGTGATGGATCCTCATGACCTAAAATCAGCACAGTCAACTCAGCTACATTTTGGAAGCTCAACTA TGCAATGAGGAATTGCAAGATAAGGGAGAGAGGAAGAAAGGAAATTAATGTTACGTATGAACTTGTTTAGTTTTAATTAT TATCTTTTTCTCAGAAGAAGTGTAATTGGTATGTTAGGGTTTCAGTTCTAGAAATTGCAAACATTTTGTATTTTTGTTGA ACTAGTCGCATTCCCTTTCCCTCCATCTCTCTTTGACAGTGATAGACATCTACTAATAGATTTACTGTTTTATTGAATTT CATGACGGTAAATTAAAGCTTATGGTAAAGTCAGCTGGTTGTGTACAAAAAACGAGGATGCTCTCAGAATCTTCATAAAT TTGCTACATTCCA
CDS sequence (LotjaGi5g1v0269500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGCGGCTTCCTCATCATCTTCACCATTCTTTGGAATCAGAGAAGAAAATTCAAGTCAGATTACACATCTTCATCA ATCCCCCACAGCTGCTTCCTCAGCCGCTCTCACCACCATGCCTCAGAAGAAACGGAGGAATCAACCCGGAACACCAAGTC CAGATGCAGAAGTGATAGCATTGTCTCCCAAGACCCTAATGGCAACAAACAGGTTCATATGTGAGGTGTGCAATAAGGGG TTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAATCTAACAAAGA GCCAAGGAGAAAGGTTTATTTGTGTCCTGAGCCCACATGTGTCCATCATGACCCTTCAAGAGCTTTAGGGGACCTCACTG GGATCAAGAAGCACTACTCTCGCAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCTAAGAAGTATGCTGTTCAG TCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGATTGTGGCACCCTCTTCTCAAGGCGTGA TAGTTTCATCACTCATAGGGCCTTCTGTGATGCCCTAGCACAAGAAAGTGCAAGACTCCCAAATGGCTTAACTCCTTTGG GGACTAATTTGTATGGCACCCCCACAAATCACATGACCTTAGGCCTCTCACAAATTGGCACCCAAATTTCTCAGCAGCTT CAAAATCACAACCAAAATGCCACTAACAACAACACCTTGCGCCTTACCGGTGCCGCAAAGTTCGAGCATTTAATCCCATC TCTAAACCAATCCTCATCATTTGGAGTACAACACTCACCACAGCAATCAATCCCTTCCTCAGCTTTCTTCATGACTGAAC CAAATCAAACATTTGATCAAGAACCACACCAAGGACCATTTTCAAACAAGAACCTAAATGGTTTGATGCAACTTCCTGAT CTTCAAGGCAACAACAACACCAACTCAAATTCTCCTTCTAATCTCTTCAACCTCAGCTTCTTTCCAAATAGCACCATGAT GGATCAATTCAACAATCACCAAGGAACAACATCACTCTATATGAACAACAACAACAACAACCCTATCATCAGTGATCATC ATCAAGTTGGTAACTCTGGCTTGTCTTCTTCACTCTTTGGAAACTCATTGCAACATGAAAACATGTCATCTCCTCACATG TCAGCCACTGCATTGCTTCAGAAAGCTGCTCAAATGGGTTCAACCGCCACAACCACCAAGGGTGCAGGTGGTTCTTCTAT ACTAATTAGAGGAATGAGTACTAGCTCATCAACCTATAATAATAATGATTCCAGATCTGACACTGAAAGGGACCTTGTAT CTGATAACAACATTGCCACTTTTGGAAGTGACCAAAGAAGAGGGGAGGGTGTGAATGTGATAATGAGAACAAACATGGAA AATGACCGCCGCAATCTTCACGGATTGATGATCAACTCTATTACCAACGGGAACAACACATCCATATTTGGTAACATGCA AGGGAATGAAAAGTTGCCACAAAATCTTGATTTGAGTTTTGGAGGTTCTGACAAGTTGACGTTGGATTTTCTGGGTGTTG GAGGAATGATGAGAAACATCAATAGTGGTGGTGAACATCAACAACAACGTGTGATGGATCCTCATGACCTAAAATCAGCA CAGTCAACTCAGCTACATTTTGGAAGCTCAACTATGCAATGA
Protein sequence (LotjaGi5g1v0269500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAASSSSSPFFGIREENSSQITHLHQSPTAASSAALTTMPQKKRRNQPGTPSPDAEVIALSPKTLMATNRFICEVCNKG FQREQNLQLHRRGHNLPWKLKQKSNKEPRRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQ SDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPNGLTPLGTNLYGTPTNHMTLGLSQIGTQISQQL QNHNQNATNNNTLRLTGAAKFEHLIPSLNQSSSFGVQHSPQQSIPSSAFFMTEPNQTFDQEPHQGPFSNKNLNGLMQLPD LQGNNNTNSNSPSNLFNLSFFPNSTMMDQFNNHQGTTSLYMNNNNNNPIISDHHQVGNSGLSSSLFGNSLQHENMSSPHM SATALLQKAAQMGSTATTTKGAGGSSILIRGMSTSSSTYNNNDSRSDTERDLVSDNNIATFGSDQRRGEGVNVIMRTNME NDRRNLHGLMINSITNGNNTSIFGNMQGNEKLPQNLDLSFGGSDKLTLDFLGVGGMMRNINSGGEHQQQRVMDPHDLKSA QSTQLHFGSSTMQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 57 | 57 | - | – | |
| PANTHER | 1 | 550 | 550 | 1.4E-211 | – | |
| PANTHER | 1 | 550 | 550 | 1.4E-211 | – | |
| MobiDBLite | 1 | 49 | 49 | - | – | |
| Gene3D | 68 | 95 | 28 | 3.6E-5 | – | |
| SUPERFAMILY | 71 | 168 | 98 | 2.7E-7 | ||
| SMART | 72 | 94 | 23 | 0.0052 | ||
| Pfam | 72 | 94 | 23 | 3.0E-5 | ||
| ProSiteProfiles | 72 | 94 | 23 | 10.99 | ||
| ProSitePatterns | 74 | 94 | 21 | - | ||
| Gene3D | 106 | 196 | 91 | 1.1E-6 | – | |
| SMART | 113 | 143 | 31 | 130.0 | ||
| SMART | 148 | 168 | 21 | 140.0 | ||
| MobiDBLite | 416 | 443 | 28 | - | – | |
| MobiDBLite | 416 | 451 | 36 | - | – | |
| MobiDBLite | 539 | 573 | 35 | - | – | |
| MobiDBLite | 541 | 573 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0269500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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