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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0271000 |
| Transcript ID | LotjaGi5g1v0271000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras family protein; TAIR: AT3G54840.1 Ras-related small GTP-binding family protein; Swiss-Prot: sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1; TrEMBL-Plants: tr|Q40210|Q40210_LOTJA RAB5B; Found in the gene: LotjaGi5g1v0271000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58430959..58436536) extracted from Lotus japonicus Gifu genome v1.2.
CTAAAATCAAAAGTCACTACAAACACAAGTACCAATTTGACTATTAACCCAAAAATCAAATAAAAAAAAAAATATGTAAT TTTCTCTTGTCCCATCATCTTTGTCATTCATCTCACGACGAGAAGAAGAAGTGGGAATCCTCGTCCTCACGGAAACCACC ATACATACATTTCCACTCTTTCAAGCTTCCATCAACCTTTCCCAGATTCTGCTTCGTCGCCACACCACCAGTTTCCGTCG CAAAAACAAATCTTTCAAACCAGTGGTGTGCACTGCCCCATCACCATTTTTTCACCCAATTTGCAGCACCCACTTGAAAA TATTCTCTTTTCTTCAATGGGTTGTGGGTCTTCCCTACCAGGTAATCAAATTCTACCCCAGTTGATTTTTATCCCTTTTT TTTAATTCCCATCATGTGTTTAATGGTAAAGTTTAAAACTTTGGTTGGAATTTCTATGTTTTAGCCATGGAGGGTTAAAG GGGTGGGGGAAAATGAGGTTTTGATTGTGATTTTGGGATTTTAGTTTAATGGGGTTCTGTAATTAGGAACAATTTTTGAG TTTTAGCTCTGATGGGGTTTTGGGTGAAATTGTTGATTTTGTGTTTTGCAGATAGGGATTCTAGGCCGTTTGGACGAGAC AATCCTGAGAATGGTGGAGGACAGGACGCGAAGAATCTACGCGTCAAGGTATTTTGTTTGTTGAGTTCTTAGATTGCTGA TGTTTTGCAAATTTTCTTCATCTTGAAAACATTAGAAGAGGGAGGCTAGGAGATTTTGTTTTTTTGTTCTAAATGGTTAA TTTCCTTGATTTTGTTACACCTTGTCTTAAATGATTTTGAATTACTGTTTTCATCTGGTGTCTGGCATTGGATTGATGTT TGTTGAATAGTTTTGTCACTTTGTGATATCATGTGTCAAACCTTTTTTGGGTAGAGACTAGAGAGGACTTTGTTATATTC AGAAAAGAAAGGAAAAGACAAACAAAACTTATTAAAATACACACTGAAACTCCTGGATATTCGAGAGATTCAGGTCTCTC CCAAGTTCCCATTTACAAATGATCCCCGACCTAATCATCTAACATTCCTCTTATTTATGACATGTGATCTCTCATTGTTT AACTTACTTCCTCCAGGACTCCACTAACTAAATAAACTACTAACTAACTATGAGTACCTACCAATAATCATAAAAATGTC TTTTATACCACCAACATTTTCTTGTTTAACCTTTACAGGACACAGTAACTAACCTTTAATTTCCACTGAACACAGCTTGT TCTCTTAGGTGATTCCGGTGTTGGTAAAAGCTGTATTGTTCTGCGATTTGTTCGTGGTCAGTTTGATCCAACATCCAAGG TAATAATATGTTCCTTTTATTACATATCTCTTTTTCATTTAATGTAAACTCTCCTAATATGGGTTATGGAGTAAATTTGT TATTTTCTAGATTTGCTAATTATTTCATGATAGGGTTCTTATGTTTTTTAGACTTTGTAATGTAAGGTAACTGTTGGAGC TTCTTTTTTGTCGCAAACAATAGCCCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGA GGTAACATTCATTTAACTTTCTTGTATGCGAATAATTTTTATACAAACCATTAGGATAGCTCAACTATATATTATTTTTT CTCTTAAAATTCACGTCCCCCTTTTTTCCTAATTTGTGCAAGAAATACATTCTGAAGTAAAACTTCATTGCCAATTTATC TTTTTCAGGTATGCTGCTTTGGCACCACTCTATTATCGTGGTGCAGCTGTTGCAGTTATTGTCTATGATATAACAAGCCC AGAATCTTTCAGCAAAGCGCAGTACTGGGTTAAGGTAGATTTACAGTTATGGCATGGTTCTATATTGCCATTTTTTTGTT TTGTATAGTACTATAGTTATTTGAATGGTGTGCATAACAAACAACTCCCTATAGGATACTCAGGAACTTTACAATGAAGA ATAGATTATTTTAATCCACTTCATTCATTTAAAATCATTGTAATTTGGTAGTTATAAGTGAAGTAAGTCATCAGATGGAT ATGTTTTGTGGGCTTGTGGCTTGATGGCAATACCCCTGCCCACAACAGGTAACAATGGAGTTAAAGATCTGGCTATTCTG TGTGTGATCCGGCATAGGATAATGGTTATGTGGGCTGTGCTAGTGTGATGTTGGCTTTTATATTGGAGCAGATGAGTGGC AAGAGAGGGGTTGAAATGTGCATTGAAGCTGTAGTATATATAAGAGGTGATGCTCTGGCTTTTGCCATTTTAGAGGTTTT TTGACAGACAATATTTTGAAAATATGGAGGAGTAGAAAACAATGGAGATACAAAATAAAGATTTAGAATGAATGCATTAT AGGAAAAGTAGGAGTAGCACAAATAGAGGGGAAGATGTGCCTAAGATGGTTTGACCATGTCAGAAGAAGACCAATAGCAG CCTCAGTAGGAAGAGTTGATCAGAGGATAGCACAATAGTTAATGGGGATGATACAATGTTTGATAGAACACTATGGTGTT ATTTTATCCACCAAAAATCTGATTGCAATGGGATAGGGTTTTGGCAAAGCTATCTAAAAAAATAAAAGAATAGCTAATAC TACTGTTTGACAAACTCATAATTGGTATCTCTTGTTTATGTGCAGCCATTGCTCATACGCTGGTATCTATCTATCTATCC ATCTATCTATTTTAATCAGAATCATTTGATAGGGATAGCTTTTTAATTTTCTGCATTTTATGTCAATTTTGTTTTAGCCC TGAAATATTACTAAACTTGTATAGGAGCTACAAAAACATGGAAACCCTGATATAGTAATGGCACTGGTTGGTAATAAAGC TGATCTTCTTGAGAAGCGGGAAGTGGCTGTTCAGGTAGTGCAACAATCCTAAACAACATTGTTGTCCAACTCCAGTTAAC AAAACATTATTTGTTTCTCTCATACTGTCTGCTCTATTGATTTGGTGTAGGATGGCATTGACTATGCAGAGAAGAATGGA ATGTTTTTTATAGAGACATCTGCAAAGACTGCAGATAATATAAATGAACTGTTTGAGGTACTTTTGATATTTACTTCCCT ACAATTATTCAATTTTGAAGTTCATCATGGCATTTTGTATTTGGTAAGAATGAAAATGGATGAACAATAGAAAATAGTCA GTGGTTCTTATTGTTATGCAATTTACTAATGGACATGATCACACCTTACCTTCAGTAATTCTACTTTCATTTTGAACTAA GCTTTATTCGCATACATGAAATCAGTGTCATAACATGATTTGGAAATTGGAATTGAATATAACTTGCCAAAAATGATATG TTCCTATTTTCGTACTGATCATGTGGTATAAAGCTTAGTCTGTTCAATGGTAAGCTACACCGAGGCTACAAGAAGCTTAA GTCAAAACATGCTCAAGTGTTAGGAACTGTTTGATATTGACCTGTAGATCTTTGGGATATTTCTAAAGGCTCTGCTAGTA GTAACTTTTCAGTTTTAACTCTGATCTTTGGTCTCTTAGGACATTGTTGACTGTGCTACTAGCAAACTTCCCCCTGATGT TCTTGCTGCTTGACGATAGTTGTAGCGAACTCATATAGACCTATTGGAGGAGCTAAAGATGATCATCTTGGGTTAGGAAT CCATCCTACAAAAATCCAAGATTGAATCTTTTTCGACAAAGGTAACATCTTGGTCTTACATAAGGATGTAGGAAGTTATA TTTTAGGGTTTAGGACAAGAGAATTAGAATCGCCTGGGTCACATTTTAAGGCTATTCAAGAACGCTACTTGTAGAGAAGT TAAACAAGCATGCTGGAAAGCTCCAACCGCTCCTCCTACATTTAGAAAGACCAAGCCTGTCGAGAATTGAAGCCATAGGA TGCCTGCTAACTATACGCTGAGGATACTAAAGAAAGATAATGTGTAGTTTTAACAAACATGATTTTTGCTTGAAAGTAAC ACCACTTTATTCCAAAGTTCCTACTGCTGTTTCTGACCTAGAATCCTTAAAAATTTGTTAACTGGCCTCAGAATTGGAAT GCTGATTTATTCAGGCTATATGACATTAGTTACTAATTAGTCATGCTCTGTATATCCTTGCCATCAAGTTCTCAAACCAA ATTGTGACGCCAACATTATATATCCTTCATTAAGAATGTTACTGAAGTGGCAGAAATTGTCCACATGTCATTGTTTGATA TAAGTTTTGTTCATTAGTTAATTACGCCATTGATGCAATTTAAAAAAATGCTAATTTTACAACTTTATAAGGGGAATATT GACGAAACCTTGATCTTGGGCCATCGTTTTCTGTGGAAGGGTACGGTAGCTTAAAATGCAGGCGTAATGGCCTGGCTATG AATATGATTCAGTACTGGGTTCAATAGTTTCTAGGAGAAGCTACAGCTCCTGGCTGTTGAGTCGAAAATTGAACGAAACT TTTTATGGATTATTTGATAAAAGTCTGTCAACATTGCACTCATCTTGCAAAATTCTACGTTCATGTTGGGTTAAATTTGA TTGTTCTTAAATCTGATTACTATCTTGCATATTGTGAGGTTAACCTCAGTTGGATACAGATCGAAACACTAATGATCAAC ATGTTTCTCTTCACAGGAAATTGCGAAAAGACTCCCTCGCCCACCAACTACTTGATGCAGATCCAGAATGCAGTTTCAGT AAAGGATTGCATTTGCTTTGGATCCTTCAAAACTGTAATGTATGAGTTATGTTTATGTATATTCTGACTATTAGATAACT ATGGTCTTTTATCAACCTGTAATAATATCATGGAGACAATGATATACCTTAGGTTATGCTTTGTCAGACCCACAAATCTG TCAAGATTCCATATCCTCGGGTCTTTTATGCATTGTTTCTGATTCAGTCAAGGCTGTAATGTCATCAAGGATGCCATGTC TGACACACAATGCTTTAGGTGGTTGTAGACCATGCTTTGTGAGACCCACAAATCATGGCATAATTGAACATATTTGGATA TTGGTTGGTTAAATTTCAATTTGCGTGCTCATTTTGAGATCACTACTATAGAATATAACTTTCACACTCATTTTATTTCA AGAGTTAAAGCTTGAAAATCCGATGCTACCAATAGAGAAATGTTTTTGTTGACACTCCTTGTACACTTACATCAAGAGAT AGAGACATGGAGAGAAAAAACAGAAGTGAAAGATATAAAGAGTAGGGATGGCAACGGGTAGGATCGGGCACGGGTTTTAC AATTACCAAACCCAAATCCCAGAACCCAAACCCAAACCCAAACACAAACCCTTATGGGCGATAAAATGAAATCCATGCCC AAATCCATTGGGTTTCGGATTTACCCGAAACCCAAATCCAAACCCATTAGTTACGTAGCAACTCAATCCAGAACTTACTT TCATATAAAAAAAGTGAAATTCATATAAAGAAAAAAAATACTATTTATCATCCTCATCCATCACTAAAGTGAGACAACAA TAGTTTAAAGTTTACTTTCTCAAACATACAAAAGTACAATTAATCATCAAACACTAAG
CDS sequence (LotjaGi5g1v0271000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGTGGGTCTTCCCTACCAGATAGGGATTCTAGGCCGTTTGGACGAGACAATCCTGAGAATGGTGGAGGACAGGA CGCGAAGAATCTACGCGTCAAGCTTGTTCTCTTAGGTGATTCCGGTGTTGGTAAAAGCTGTATTGTTCTGCGATTTGTTC GTGGTCAGTTTGATCCAACATCCAAGGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCCCTGCAAGACTCTACA ACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGGTATGCTGCTTTGGCACCACTCTATTATCGTGGTGCAGC TGTTGCAGTTATTGTCTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCGCAGTACTGGGTTAAGGAGCTACAAAAAC ATGGAAACCCTGATATAGTAATGGCACTGGTTGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTGGCTGTTCAGGAT GGCATTGACTATGCAGAGAAGAATGGAATGTTTTTTATAGAGACATCTGCAAAGACTGCAGATAATATAAATGAACTGTT TGAGGAAATTGCGAAAAGACTCCCTCGCCCACCAACTACTTGA
Protein sequence (LotjaGi5g1v0271000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCGSSLPDRDSRPFGRDNPENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST TVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGNPDIVMALVGNKADLLEKREVAVQD GIDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRPPTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | - | – | |
| PANTHER | 22 | 198 | 177 | 3.3E-89 | – | |
| PANTHER | 22 | 198 | 177 | 3.3E-89 | – | |
| Gene3D | 23 | 199 | 177 | 1.0E-63 | – | |
| ProSiteProfiles | 27 | 200 | 174 | 32.339 | – | |
| SUPERFAMILY | 29 | 198 | 170 | 1.15E-55 | ||
| CDD | 32 | 195 | 164 | 4.61041E-113 | – | |
| SMART | 33 | 197 | 165 | 2.3E-79 | – | |
| PRINTS | 33 | 54 | 22 | 2.6E-38 | – | |
| TIGRFAM | 33 | 190 | 158 | 2.1E-27 | ||
| SMART | 34 | 197 | 164 | 1.1E-26 | – | |
| Pfam | 34 | 194 | 161 | 1.6E-57 | ||
| SMART | 35 | 197 | 163 | 8.7E-13 | – | |
| PRINTS | 56 | 72 | 17 | 2.6E-38 | – | |
| PRINTS | 75 | 97 | 23 | 2.6E-38 | – | |
| PRINTS | 137 | 150 | 14 | 2.6E-38 | – | |
| PRINTS | 172 | 194 | 23 | 2.6E-38 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0271000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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