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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0273300 |
| Transcript ID | LotjaGi5g1v0273300.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium lipid binding protein, putative; TAIR: AT5G04220.3 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q7XA06|SYT3_ARATH Synaptotagmin-3; TrEMBL-Plants: tr|A0A151SED0|A0A151SED0_CAJCA Extended synaptotagmin-2; Found in the gene: LotjaGi5g1v0273300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:58674117..58679326) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAATGCACACACACACAATTTGAATTAGAAACAGAAAGACATGACAAGGACCCATTGTTGTATGCACAAAGCATGTA AAGCCAATTTGAAGTGAAAAACAGAGAGATGAAGGTGTCTCTGTTTTGGCGCTTTCATTAAGACTCACACACACTCATTT ATTTCTTCTACAGTTTCCATCGCCATCCTCAGTTTCCTAGAAAACTGTCAACCCATTTTCTTCACCCTTTCATCTCTACT CTTCGATCATCACCACCACCACCAGCATTTTCCACTTCTTCCTCTGTTCTGGTTCACCGAAAATGGGGTTTGTTGGAAGT TTCTTGGGGATTTTTGGTTTTGCCATTGGAATACCCTTTGGCCTCTTGCTGGGGTTCTTTCTCTTTGTTTATTCAGAGAC CAAACAAGTGAAGGTTACTGTTCTTGCATGATTCACCTACATGCATTCAATAAAATTCAATGCAGATGCATTTTTTTATA AACAGTGTTGTGGGAACTGAATTTTTGTTTTTTCTTTTTGGGATGAAGAATTTAAGACCCCATTTTCATTTTGGAATCTG GGTATGCTTCAAAATTTGATCTTTTGTTTGTTTGTTGCAGGACCCAGTTGTGAGACCTATTAGTGAATTAGGCCCAATTG CTCTGCAAGAACTTCTACCTGAGATTCCTCTGTGGGTGAAGACACCTGATTATGAAAGAGTAAGTTTTTTCTTGTATGTT CTGAGCTTTTTGATGATGTTACTGTGTTTGATAAATTGCATGGTTCTTTCTTCAGGTTGATTGGATGAACAAGTTTTTAT TGGATATGTGGCCTTACTTAGAAAAGGTATTTCAGTAATTCATGAGGGTGAATTCATCCTCTTATTGGATGATTCTTGAC TGGTGTTTGATTTTGTGGCACAGGCAATTTGTGGGATGATTAGAACCACAGCACAACCAATATTTGCTGAATACATTGGA AAGTACCAGATCAAAGCAATTGAGTTTGACAAGTTAAGCCTTGGTACTCTTCCTCCTACTATCTGTGGTAAGTCTTTCCC CAAATTGTTTATTTTTGCAAATATTTTGTTCAAACTTCTTCCCAGAAGATAGAAATGGTTTACCATTTAATCTGAAATTC CATTGGCCTAGAAGAATTTTGAATTAGAATACCTAAGGATGGTTTTCACCCAGGAGGTTTGACAATGATTAAGGATATAT CTTATGTGTTAAATATGAATCCTTGGAAGTTTGAATTGGAGTACAAATGCAGTTTAGCTCAGAACATTAAGTGCACTTGA ATAAATTTTGGTGAGGTAACCAGCACTATAGAGATGTTGTTTTCTGTTTGTCCACGTCAAAGGTCGATTTACTTTATAAA GTTCAGTCACACAACACATTTGCGGCCTTTATTATCTGATAGGTTACGAGGTGTAAAGGTTTAGTGTTAAAGTCCACATT GTAATTCTGCAGGTATTAAAGTTTTAGAAACCAATGAAAAGGAATTGGTCATGGAGCAAGTTATCAAATGGGCTGGCAAT CCAAACATAGTGTTGGCTTTGTATGTGTCATCTTTGAAGATCACGGTTCAGGTCAGATAAGCCTTGAGTTACAATCCTAA ATAATTCATGTTTTTCTAGTTCCTTCAAGATTGATGCTATCCTTCCAGGAATTCATTTTTATTCTTCTCAGTTGACAGAC TTACAAATATTTGCAACACCGCGGGTAACTTTAAGACCTTTAGTGCCTACATTTCCATGTTTTGCAAAGACTGTGGTATC TTTGATGGAGAAGGTAAAGGAAGTGTCGTATTCAATTCTAATTTCTCTTCATGTCTTTTCTAATATAGTCAGAACAAATT CATTATTTTGTGATAATTTTGTTCAACGCTCAGCCTCATGTGGATTTTGGGATGGCAATATCAGGAGCGGACATCATGTC GATACCTGGTCTTTATAGATTTATTCAGGTACTTACATTTATTATTATTAGTTTTTTTGCTGATAATGGTTGCTATGGTT GAACTGTCTACCAAGTACCAACTTGACTAAACAAAAGCTAACTTACACTTTTTTTATGTTTTACTTTTTCTGGATTAAAA TTTTCACAGTAGTAAACTTTATTGTGAATAAAAACTTCTGATTTTCTCCCCTATACATCATGGAATTCAGTTAATCACTA CAAATACACAAGGGTAGTTTTAGGATTTTTGTGGATTTAGATTATGCAACTTGTTACTCCTATGCTCATTTATTTTTCAG TTCTTTGATGGACTGTTAGATTGTTACTTGTTAGTTCCCTTGCAAATTCTATAATGTTATTTTGTTGTTATTTTATTGTT ATCATCTTTTTTTCCTGCAATTTTAATTGGCATGGTGTTTGACAATTGAGCTGGACTTCCACTTTAACTACTTCTGCTGC TTACAGAAAACAATAAAAAAACAAGTTGCAAGCCTCTATCTCTGGCCTCAAACCCTGGAAATTCCCATTCTTGATGAATC AACGTAAGTTTGAATGAATGATAGTGTTTATGTGCTCACAGAAATAATTTTCAAGGTCTAAAAGCTTTGTAAATTTTTAT CCTGCTATTTTACAAACATATATGCGACCTGGTCCTTATCTAAAGAAGTTGACATAATTGGCATACTGTTGCTAGATTAC ACAAAGCTTCAACCAGACATCTTACTAGAATTATGTTACTATTAAACATATGATCTTATTGTTACAGCATTTGATGAGAA AAAATACTGCAAGTCGCCTAAGTTCACATAAACTTTCTGTTTTCTTCTATGATGAAAATGAGCTTCTGAAATTGGTTCTT GATACTTTTGTTTACATCTCTATAGGGTGGCGATAAAGAAGCCTGTGGGAATACTACATGTGAATGTGGTTAGGGCACTT AAGCTTTTGAAGATGGATTTGCTGGGAACTTCTGATCCTTATGTGAAACTAAGCATGACTGGGGAAAAACTTCCAGCAAA GAAAACCACTGTCAAGAGGAAAAATTTGAATCCTGTGTGGAATGAGAAGTTCAAGCTTATTGTGAAGGACCCTCAGTCTC AAGTTCTCCAATTACAAGTCTATGACTGGGACAAGGTTTTCCCTATCTTTTACTTGTTTGAATTTTGGTTAAAAAACAAG TAATGTAACACAATAATCTTAGCTGTAGCATTCACCTTTCATTTATGTTTGAAAGGAAGGCCCTTCATTTTGGCTTCAAA TATTGTGTGGCAACCGATGAAACCTAAATGACCATTTATTTTCAAGCTTTGTTAGAAATGTGAAAACTCATATTTTAACT TATTTATGTGTACACAAAACAAATATAGCTAATTGGTGGCACTCACCTCTGAGATAGACCTTTCAAACAGGAGCTTAGGA AACCTATCTCAAGGAGTGATTTATCTTTTCTCTTTTTGATGATGTTAATTTACTTCACTACTAGAGATACTTAGTTACTT TTAACTTTCAAGGAACAGCTGTATTTTCTGTGTGTAGCTTTGTTTTGTAAAAATCTTTTCAAGCAGGAACTTGGGAAATC AATCTTGTCTTTCATTTCTGTCCATTCAATTCATTGATGATATGCAATTTTAGTCTGTAGAAGAAGCCAATCACTTGGGT TCAAGTCCTCGAAACAACCTCTTGTGTAAAAAACAGGGTAAGGCTGCGTACAGTAGACCGTGTGGTCGGACCTTTCCCCG GGCCCACACATTGCGGAGCTTTAATGCACCGGGCTGCCCTTTTTTAGATGAAGCCAACCCCTTCCATTCAGTTACTAGAT AATTGGTTTGCATTTGTAATGGGATTTATTTTCTTAGCTGGTTATGACTTTTTTCAATGATATTTCTTCACAGGTTGGTG GACATGACAAGCTGGGAATGCAACTAGTCCCTCTTAAGCTTCTTAAACCCTATGAGAATAAAGAGTTTACACTTGATTTA CTCAAGGACACAAATATCAATGAAACTCCAAATAAGAAGCCAAGAGGGAAAATTGTGGTGGACTTGACTTTTGTTCCTTT CAGAGAAGATAGTATCAAATTTGGTGGATCTTCAGATAGATATGAGAGGAAGGATAGTGGAGTTGATAGTGTATCCGATG ACGAAGTCCAAGACGGTGCTGGTTTGCTTTCAGTTGTTATACAGGAGGCTGACGAGGTTGAAGGAGAACATCACAACAAC CCATATGCAGTGCTTACCTTTAGAGGCGAAAAGAAAAGGACAAAGGTAAACTTTCACCTTCAGTATAATTGTGCTACACT TTTCAGCTTTCTATTATGCACATCATGTTATTTCAGCTTTCTGTTATGCACATCATATTATCATTTGTATACACAATTGA TTCAGGCAAGTTATTACATTTACTTAAGGAATTTGTTCCAATTTTTTTTTTCCAGATGATGAGGAAAACCCGTCACCCGC GTTGGAATGAAGAGTTTCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAAATACACATAGAGATTATGAGCAAGAGG AAGAGCTTTAGTTTTCTATCAAAGGTGCCATTCCATTTTTCTGTTAATTGCAACTTTAAATAGATTGATTGAAAATTTGT TTTTCAGAAAATTTAGCGCACTGTTTGATCCATATTGGTGTTGATGATGTGCAATGGCCTATTTGGATAACATCATGTTT GGACCAACTTCTCCTTAGAATAAATTCTGACACCTAGAAGCTATTAACAGACGCTTTTCCTCATAATTGATTTTAGCTTC AGAAATAATTGTAGATTGATTTTTAAACATGCACCAAGTCATCTTGTGTTAATCACTGATATTGATATGAGATTTTCTAT GATATGCAGGAATCCCTGGGGCATGTGGAGATTAACCTGAGTGATGTAGTGCACAATGGTCGCATTAATGATAAATACCA TCTAATAAATTCAAGAAATGGAGTGATGCATGTTGAGTTGCGATGGAAGGTAGTTTGACATTGACAAACTAAAACCTTTA ATTTGTGGTATTATTTTGTTACTCTACTACCTTAGTTGACAATTAAGCTCATTATTTTTTACAATGTATCTAAAGAGTGT AGGCACATCGCAACTGGATCGGATCTTCTTGATCACTGGGAAAAAAATCTGAACCGTCCAAAATATGTTAAAAAATATAG GAAAAATTGAGACCGTCCGATTTCTGCTTAACAAAACAAAACACATAATTTACAAAACGATTTACGTAATTACAAAAAAT GTTATGGTAG
CDS sequence (LotjaGi5g1v0273300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACAAGTTTTTATTGGATATGTGGCCTTACTTAGAAAAGGCAATTTGTGGGATGATTAGAACCACAGCACAACCAAT ATTTGCTGAATACATTGGAAAGTACCAGATCAAAGCAATTGAGTTTGACAAGTTAAGCCTTGGTACTCTTCCTCCTACTA TCTGTGGTATTAAAGTTTTAGAAACCAATGAAAAGGAATTGGTCATGGAGCAAGTTATCAAATGGGCTGGCAATCCAAAC ATAGTGTTGGCTTTGTATGTGTCATCTTTGAAGATCACGGTTCAGTTGACAGACTTACAAATATTTGCAACACCGCGGGT AACTTTAAGACCTTTAGTGCCTACATTTCCATGTTTTGCAAAGACTGTGGTATCTTTGATGGAGAAGCCTCATGTGGATT TTGGGATGGCAATATCAGGAGCGGACATCATGTCGATACCTGGTCTTTATAGATTTATTCAGAAAACAATAAAAAAACAA GTTGCAAGCCTCTATCTCTGGCCTCAAACCCTGGAAATTCCCATTCTTGATGAATCAACGGTGGCGATAAAGAAGCCTGT GGGAATACTACATGTGAATGTGGTTAGGGCACTTAAGCTTTTGAAGATGGATTTGCTGGGAACTTCTGATCCTTATGTGA AACTAAGCATGACTGGGGAAAAACTTCCAGCAAAGAAAACCACTGTCAAGAGGAAAAATTTGAATCCTGTGTGGAATGAG AAGTTCAAGCTTATTGTGAAGGACCCTCAGTCTCAAGTTCTCCAATTACAAGTCTATGACTGGGACAAGGTTGGTGGACA TGACAAGCTGGGAATGCAACTAGTCCCTCTTAAGCTTCTTAAACCCTATGAGAATAAAGAGTTTACACTTGATTTACTCA AGGACACAAATATCAATGAAACTCCAAATAAGAAGCCAAGAGGGAAAATTGTGGTGGACTTGACTTTTGTTCCTTTCAGA GAAGATAGTATCAAATTTGGTGGATCTTCAGATAGATATGAGAGGAAGGATAGTGGAGTTGATAGTGTATCCGATGACGA AGTCCAAGACGGTGCTGGTTTGCTTTCAGTTGTTATACAGGAGGCTGACGAGGTTGAAGGAGAACATCACAACAACCCAT ATGCAGTGCTTACCTTTAGAGGCGAAAAGAAAAGGACAAAGATGATGAGGAAAACCCGTCACCCGCGTTGGAATGAAGAG TTTCAATTCATGCTAGAGGAGCCTCCTCTACATGAGAAAATACACATAGAGATTATGAGCAAGAGGAAGAGCTTTAGTTT TCTATCAAAGGAATCCCTGGGGCATGTGGAGATTAACCTGAGTGATGTAGTGCACAATGGTCGCATTAATGATAAATACC ATCTAATAAATTCAAGAAATGGAGTGATGCATGTTGAGTTGCGATGGAAGGTAGTTTGA
Protein sequence (LotjaGi5g1v0273300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKFLLDMWPYLEKAICGMIRTTAQPIFAEYIGKYQIKAIEFDKLSLGTLPPTICGIKVLETNEKELVMEQVIKWAGNPN IVLALYVSSLKITVQLTDLQIFATPRVTLRPLVPTFPCFAKTVVSLMEKPHVDFGMAISGADIMSIPGLYRFIQKTIKKQ VASLYLWPQTLEIPILDESTVAIKKPVGILHVNVVRALKLLKMDLLGTSDPYVKLSMTGEKLPAKKTTVKRKNLNPVWNE KFKLIVKDPQSQVLQLQVYDWDKVGGHDKLGMQLVPLKLLKPYENKEFTLDLLKDTNINETPNKKPRGKIVVDLTFVPFR EDSIKFGGSSDRYERKDSGVDSVSDDEVQDGAGLLSVVIQEADEVEGEHHNNPYAVLTFRGEKKRTKMMRKTRHPRWNEE FQFMLEEPPLHEKIHIEIMSKRKSFSFLSKESLGHVEINLSDVVHNGRINDKYHLINSRNGVMHVELRWKVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 471 | 471 | 5.7E-271 | – | |
| ProSiteProfiles | 1 | 176 | 176 | 21.41 | ||
| Pfam | 1 | 175 | 175 | 6.6E-12 | ||
| PANTHER | 1 | 471 | 471 | 5.7E-271 | – | |
| Gene3D | 184 | 343 | 160 | 1.6E-34 | ||
| SUPERFAMILY | 185 | 319 | 135 | 4.98E-32 | – | |
| Pfam | 188 | 286 | 99 | 3.7E-23 | ||
| SMART | 189 | 289 | 101 | 3.0E-19 | ||
| ProSiteProfiles | 190 | 274 | 85 | 17.042 | ||
| CDD | 190 | 292 | 103 | 1.44747E-26 | – | |
| PRINTS | 205 | 217 | 13 | 9.5E-8 | ||
| PRINTS | 232 | 245 | 14 | 9.5E-8 | ||
| PRINTS | 254 | 262 | 9 | 9.5E-8 | ||
| SUPERFAMILY | 353 | 469 | 117 | 6.83E-20 | – | |
| Pfam | 354 | 455 | 102 | 1.2E-14 | ||
| Gene3D | 354 | 472 | 119 | 1.5E-25 | ||
| SMART | 354 | 452 | 99 | 6.1E-16 | ||
| ProSiteProfiles | 355 | 437 | 83 | 10.604 | ||
| CDD | 355 | 456 | 102 | 2.36813E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. |
Expression pattern of LotjaGi5g1v0273300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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