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LotjaGi5g1v0274000.1

Overview

Field Value
Gene ID LotjaGi5g1v0274000
Transcript ID LotjaGi5g1v0274000.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|A0A151SE25|A0A151SE25_CAJCA GATA transcription factor; Found in the gene: LotjaGi5g1v0274000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:58758071..58762496) extracted from Lotus japonicus Gifu genome v1.2.

TTTATGTAAACCATGTGTCTTCCAAATTTCCCATTATTTTCTCATCCAAATCAGTGGTTGCACAAAGAAGAAACTCAAGA AAGGTAAAGAGCAAAAAATATGAACATTTTTATGTTTCTTCTTCTTCTTGTTATTCTCAATGTCCAAATTTTCTGATTTC AAAACCCATTTGTGTTTAACAATCGTTTTCATTGTTGGGGGGTTATGGGGTAGAATAGATTGAAATTGAATTGAATGGAA AATGGAGGTGAAAATCCGTGAATGAAGGAAATGGGTTGTGAGCGATGTGGGACATGAGAGAGAGGTAATAGAAGGAGGGA GAGAGAGAGAAAGTGAAAAGAAGGAAAAAGGGAAGAGAGAAGACTTCAACATCACGACAGTGAGGGGATAGTAAAAGACA GCTAGCAATGAAGGAGGAGCCTCACCTACCAGTGCCCATCACATTCTTTCTCTCTCTCTCCCTGTTTCTCTTCCTTCATA ACCCCCTCTTCCTCATTTAAGCCTTCTTCACTCTCCTCTCTCTCCTTTCAAAAACCCTCTATCTCACTCACTCACATAGT GTTATTATTCTTCTTCTTCTTCTCTTAGCTAGTTACTGTTAACAACAAAGAAACAAAGGATTCTTAGTTTCAGGTTTGCC TCCCTGCATGTTCTCTTGTTCAATTTTGAGTCATACCCTTTTCTCATTTTAGCCTTGTGCTTCTTTAGAGGACTTGAATT TTATGGAGAATTGGGGTCATGCCATGTTTCATTGTCACCAATTTTCTTCTTCTAAAAAAACAGAATTTGAACCAAAACTT GAAATTTTCTTGAGTTTTAGTCTTTGTACCCATATACACATATTTCAACTAGTGTGTTGCCATTGCTTATTTATTTCCTT TTAATTTTGCAGGCTTTGAATTTTTAGGTTACTTAGACACCCTGCTCAAGAATTTTAGCCCAATTGAACAAGGTTAGCTA GCTTGACCTTCTTCAACTTTACCTCAATTTTCAAAATGTTCACATTCAATTCAATTCAATTTTTCTATGGAAAAATGAGG ATGCAATAATGGAGTTTCCATTTTCAATTTTGGAAAATTGAAGTACAAGGAGAACGTGGAGAGGGAAAAATAAAGAGTGA TTTTGGATAAAAAGGGAACAAGATTAGAAGCTGGCAATTTGGGACCAGCTTCATATCCTAAAATCTTCAATTTCGGATTT TCATTTGATTAAAGAAGGAAAATAAGTAATTAAAATAAAAACATTTTTTTTTGTTTCCTTTTATTTCTTCAATAATTTTC AGATATAAATATTGAATACCAATTCCAAATGCTAACATGCGCTAGTTGCTAACATTCAACAAAAGCTGCTAAGAATTTTC TCCCCTAACTTTCTCTCCGGTTTGAATTTTCTCAGGAAAATCTCACTCACCGAGAAAATGGTTGGACCAAACTTCATGGA CGAGTTAGACTGCGGAAGCTTCTTTGACCACATCGACGACCTCCTCGATTTCCCCGTCGAGGACGTCGACGGCACCGCCA CCACCTTACCATCCGCCGCCGCCGCAGCCGCGAACTGCACCTCCCTAGCCAGCATCTGGCCCCCAGAAACCGACTCGTTT CCCGGCTCCGACTCGGTGTTTTCCGGCAACAGCGGCTCGGACCTCTCGGCGGAGCTCTCTGTTCCGGTGAGTTTCCAAAA CGCCACCGTTTCATCCACAATTTTTATTTTTATTTCTATTTTTTTTATTTAAAAGATTTTGGCGCGTTCATGTGAACAAC GTCTAATGCCGTTAGATTTCCTGATTATGACATCATAGTTGCGTGTACGGTCCTGATTGTCTGTTTTGAATGCTGTAACT ATTGCCAGCCTGTCACTACGCGTAACTAGTAGCATGAAAATTTGGTTCTACCTGCTTCTGGACATAGTAGAGTAATGTCT TTACTTCATAAATAAGAATGAATATTTTCTTATGAAAAAATAAGAATGAATACACCTCTGGTTACCATTATAAGAAAAAA AATAGCTTTTTAAATTCATTAAATAAATGGTATATGTGGTTATTAAAATAGTAACTGGAGGTATGATATTATAATCGCTC TTTCATAAATTTTTGTTTTGAAATACACTCCTTTCATAAATTGATAGTTAGAAATTTTCAATTTTATTAAAAAGGAAAAA TTGATCATTCAATGATAAGTTATTAAGAGGTGTAGTGTATAAAATAGGAGTGTTGAAGATTTTTTCCATAAATAGAATGG CTTGAGTAGTCCAAAAGGTGTTTAAATTTTGAATTTAAATTTTATACAATTATTTGGAGTTTTGGAGACATTGAAATTCC AAAATATCTAGACAAGGGTTTTTATTGTCTAAAGGGTGGGTCCAAACATGACATTTTTTCATATTTAAATTTGAGTATTT GAGACTTTCAAAAAAATAGTTGGGTATTTGAGTATGGGGACATTATTAATTGACTATTTATAGTGAAGGGTGTTTTGGTC ATTTCAAGAGGAATTTGATTGTGTCGGTGACACGTGGCACATCACTTCCTCTTTACTCTTCACCATTGGGGCTGCGCTGT CTCAATTATTTGAACCATCATTATTGGATGTCATGTGATTTTGCATGTGATGATCACGTGATGTTACCACCCACATAAAT AATGATTAATGAGGATTGAAAAAAAGTGGTCACGGTGGATAGCAGTAGCAACTACCAACCCATGTTTTCATGTTTTTTTT AATACATTAGCACAAATTCTTATTCTTCATCATGCTTAGCACGTTACATGTTTCATATTTGTTCTTTGTTGAAATTTTTT TAGAATCAATTCTAGTCCAAACCTAGCATGTTTGGATTGACTTATTTTTTTCAGAATAAAAAATGTAATTAAAAAGTTAC TTACAGAAGCTTATCCGTAGAATTAGTCCCGACTTTAAAATCAATTGTAGAAGAATTTTAGAAAAATGTGTTAAATGTGT ATTGAGTTATGTAATATGGTAAAGGGTGATTCTGATTTTGACCAATGTGTTGTTAATTCCAGTATGAAGACATTGTCCAA TTGGAATGGCTGTCAAACTTTGTGGAGGACTCATATGGGGGTAGCCTCACCATGAAGAAGGTGGAGCATCAGCAACCATC ATCCACCATCACAACCAAAGAGGATTCAGTGCACAACCAGTTCCAGACATCAAGCCCAGTTTCTGTCTTAGAAAGCAGCA GCTCCTGCTCCGGCGGGAAGCCGGCAGAGATTTACATCCCTGTCCCTTGTGGGCGCGCACGCAGCAAGCGTCCGCGCCCT GCGAGCTTCAATCCTCGCTCTGCCATGCAGCTCATTTCCCCTGCTTCCTCTTTTATTGGGGAGAACAACACCATGAAGCC TAATTATCATCATCATGTCAGGACCTCTTCAGATTCTGAGAATTTTGCTGAGTCTCAGCCTGTGATTACCAAGATGATGA TGCCAAAACAGGCTTCTGGGGAGCCTAAGAAGAAGAAGAAGATCAAGGTTCCACTTCCACTTGCTCCATCTGATGGAAAC AATATTCAGAATGGTTCACAACCGGTCAGGAAATGCATGCATTGTGAGATCACCAAGACTCCTCAGTGGAGGGCAGGGCC AATGGGGCCGAAAACACTCTGCAATGCTTGCGGCGTTCGCTACAAGTCTGGCCGCCTCTTCCCTGAGTACCGGCCTGCCG CCAGCCCGACATTCTGCCCGGCCGTGCACTCGAATTCCCATAAGAAGGTCCTGGAAATGAGATGCAAGGGTGAGGATTCT GGCCTTGCAGATCAGCCTGAACTTATTCCAAACACTAACAGCAGCCTCACCCTGGAGGAATACATGTGAGGGGGGAATCA TCCTAGTTGGGAATTTCTCAATTTCAATGCCAGTGCCTCCTCTAATGTCATGTCTTAAGTTGTTTTGTTAAGGATATTTC ATTTCTTTTGTTCATTGGTTTTTGTACAGGGTTGGTCTGGGGGAAATAGGAGCAAATAGATGATGATGATGATGATGATC ATAATTTAGATGTTAGAGGAAGATTGTAATCAGAAGTGGAGAAAAAAGGGGTAGTGATATGGAAGTCAAAAGAGGTTTAG AGTCTTTAGGTCTAGTAAGTGTAGGTCCCTTAAGGTCATTAGGAGTTGGTGTCCCTGTTGTCTTCCTTTCTTTTCTTTTC TTTTTCTTGCCATTCTTTTCATTTTTTCTTTTTTGCCTTTTTATATATATCCCTCTTTGTGGGAATTCTTTTTGCAGTTT ATTTGTAGCAAAAATTCTGAGTTAAGAAACTTAAAATTTGTGTTGCCCTGTTTGCTTTCTACTAATCACTTTCTTGTTCT GCTAATATCCTCTCCAACGTCTCTATACATATATCGGAGATATAGTGCATGTTTGAAAATCACTTTCATGAGTAGCTCCT TTGTTCCAGAATTGATAATGAGGAAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0274000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGGACCAAACTTCATGGACGAGTTAGACTGCGGAAGCTTCTTTGACCACATCGACGACCTCCTCGATTTCCCCGT CGAGGACGTCGACGGCACCGCCACCACCTTACCATCCGCCGCCGCCGCAGCCGCGAACTGCACCTCCCTAGCCAGCATCT GGCCCCCAGAAACCGACTCGTTTCCCGGCTCCGACTCGGTGTTTTCCGGCAACAGCGGCTCGGACCTCTCGGCGGAGCTC TCTGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTGTCAAACTTTGTGGAGGACTCATATGGGGGTAGCCTCACCAT GAAGAAGGTGGAGCATCAGCAACCATCATCCACCATCACAACCAAAGAGGATTCAGTGCACAACCAGTTCCAGACATCAA GCCCAGTTTCTGTCTTAGAAAGCAGCAGCTCCTGCTCCGGCGGGAAGCCGGCAGAGATTTACATCCCTGTCCCTTGTGGG CGCGCACGCAGCAAGCGTCCGCGCCCTGCGAGCTTCAATCCTCGCTCTGCCATGCAGCTCATTTCCCCTGCTTCCTCTTT TATTGGGGAGAACAACACCATGAAGCCTAATTATCATCATCATGTCAGGACCTCTTCAGATTCTGAGAATTTTGCTGAGT CTCAGCCTGTGATTACCAAGATGATGATGCCAAAACAGGCTTCTGGGGAGCCTAAGAAGAAGAAGAAGATCAAGGTTCCA CTTCCACTTGCTCCATCTGATGGAAACAATATTCAGAATGGTTCACAACCGGTCAGGAAATGCATGCATTGTGAGATCAC CAAGACTCCTCAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGCGGCGTTCGCTACAAGTCTGGCC GCCTCTTCCCTGAGTACCGGCCTGCCGCCAGCCCGACATTCTGCCCGGCCGTGCACTCGAATTCCCATAAGAAGGTCCTG GAAATGAGATGCAAGGGTGAGGATTCTGGCCTTGCAGATCAGCCTGAACTTATTCCAAACACTAACAGCAGCCTCACCCT GGAGGAATACATGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0274000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGPNFMDELDCGSFFDHIDDLLDFPVEDVDGTATTLPSAAAAAANCTSLASIWPPETDSFPGSDSVFSGNSGSDLSAEL SVPYEDIVQLEWLSNFVEDSYGGSLTMKKVEHQQPSSTITTKEDSVHNQFQTSSPVSVLESSSSCSGGKPAEIYIPVPCG RARSKRPRPASFNPRSAMQLISPASSFIGENNTMKPNYHHHVRTSSDSENFAESQPVITKMMMPKQASGEPKKKKKIKVP LPLAPSDGNNIQNGSQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVL EMRCKGEDSGLADQPELIPNTNSSLTLEEYM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF016992
3 344 342 6.1E-73
IPR016679
PANTHER
PTHR45658
3 344 342 1.1E-136 –
PANTHER
PTHR45658:SF51
3 344 342 1.1E-136 –
MobiDBLite
mobidb-lite
224 254 31 - –
SMART
SM00401
255 305 51 1.7E-16
IPR000679
ProSiteProfiles
PS50114
255 291 37 11.583
IPR000679
Gene3D
G3DSA:3.30.50.10
255 306 52 6.7E-14
IPR013088
SUPERFAMILY
SSF57716
259 318 60 9.5E-15 –
CDD
cd00202
260 317 58 1.2753E-14
IPR000679
Pfam
PF00320
261 294 34 6.3E-15
IPR000679
ProSitePatterns
PS00344
261 286 26 -
IPR000679
MobiDBLite
mobidb-lite
330 351 22 - –
MobiDBLite
mobidb-lite
335 351 17 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0045893
Biological process Positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Positively regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0274000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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