Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0274000.2

Overview

Field Value
Gene ID LotjaGi5g1v0274000
Transcript ID LotjaGi5g1v0274000.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor; TAIR: AT4G32890.1 GATA transcription factor 9; Swiss-Prot: sp|O82632|GATA9_ARATH GATA transcription factor 9; TrEMBL-Plants: tr|A0A151SE25|A0A151SE25_CAJCA GATA transcription factor; Found in the gene: LotjaGi5g1v0274000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:58758101..58762812) extracted from Lotus japonicus Gifu genome v1.2.

CCATTATTTTCTCATCCAAATCAGTGGTTGCACAAAGAAGAAACTCAAGAAAGGTAAAGAGCAAAAAATATGAACATTTT TATGTTTCTTCTTCTTCTTGTTATTCTCAATGTCCAAATTTTCTGATTTCAAAACCCATTTGTGTTTAACAATCGTTTTC ATTGTTGGGGGGTTATGGGGTAGAATAGATTGAAATTGAATTGAATGGAAAATGGAGGTGAAAATCCGTGAATGAAGGAA ATGGGTTGTGAGCGATGTGGGACATGAGAGAGAGGTAATAGAAGGAGGGAGAGAGAGAGAAAGTGAAAAGAAGGAAAAAG GGAAGAGAGAAGACTTCAACATCACGACAGTGAGGGGATAGTAAAAGACAGCTAGCAATGAAGGAGGAGCCTCACCTACC AGTGCCCATCACATTCTTTCTCTCTCTCTCCCTGTTTCTCTTCCTTCATAACCCCCTCTTCCTCATTTAAGCCTTCTTCA CTCTCCTCTCTCTCCTTTCAAAAACCCTCTATCTCACTCACTCACATAGTGTTATTATTCTTCTTCTTCTTCTCTTAGCT AGTTACTGTTAACAACAAAGAAACAAAGGATTCTTAGTTTCAGGTTTGCCTCCCTGCATGTTCTCTTGTTCAATTTTGAG TCATACCCTTTTCTCATTTTAGCCTTGTGCTTCTTTAGAGGACTTGAATTTTATGGAGAATTGGGGTCATGCCATGTTTC ATTGTCACCAATTTTCTTCTTCTAAAAAAACAGAATTTGAACCAAAACTTGAAATTTTCTTGAGTTTTAGTCTTTGTACC CATATACACATATTTCAACTAGTGTGTTGCCATTGCTTATTTATTTCCTTTTAATTTTGCAGGCTTTGAATTTTTAGGTT ACTTAGACACCCTGCTCAAGAATTTTAGCCCAATTGAACAAGGTTAGCTAGCTTGACCTTCTTCAACTTTACCTCAATTT TCAAAATGTTCACATTCAATTCAATTCAATTTTTCTATGGAAAAATGAGGATGCAATAATGGAGTTTCCATTTTCAATTT TGGAAAATTGAAGTACAAGGAGAACGTGGAGAGGGAAAAATAAAGAGTGATTTTGGATAAAAAGGGAACAAGATTAGAAG CTGGCAATTTGGGACCAGCTTCATATCCTAAAATCTTCAATTTCGGATTTTCATTTGATTAAAGAAGGAAAATAAGTAAT TAAAATAAAAACATTTTTTTTTGTTTCCTTTTATTTCTTCAATAATTTTCAGATATAAATATTGAATACCAATTCCAAAT GCTAACATGCGCTAGTTGCTAACATTCAACAAAAGCTGCTAAGAATTTTCTCCCCTAACTTTCTCTCCGGTTTGAATTTT CTCAGGAAAATCTCACTCACCGAGAAAATGGTTGGACCAAACTTCATGGACGAGTTAGACTGCGGAAGCTTCTTTGACCA CATCGACGACCTCCTCGATTTCCCCGTCGAGGACGTCGACGGCACCGCCACCACCTTACCATCCGCCGCCGCCGCAGCCG CGAACTGCACCTCCCTAGCCAGCATCTGGCCCCCAGAAACCGACTCGTTTCCCGGCTCCGACTCGGTGTTTTCCGGCAAC AGCGGCTCGGACCTCTCGGCGGAGCTCTCTGTTCCGGTGAGTTTCCAAAACGCCACCGTTTCATCCACAATTTTTATTTT TATTTCTATTTTTTTTATTTAAAAGATTTTGGCGCGTTCATGTGAACAACGTCTAATGCCGTTAGATTTCCTGATTATGA CATCATAGTTGCGTGTACGGTCCTGATTGTCTGTTTTGAATGCTGTAACTATTGCCAGCCTGTCACTACGCGTAACTAGT AGCATGAAAATTTGGTTCTACCTGCTTCTGGACATAGTAGAGTAATGTCTTTACTTCATAAATAAGAATGAATATTTTCT TATGAAAAAATAAGAATGAATACACCTCTGGTTACCATTATAAGAAAAAAAATAGCTTTTTAAATTCATTAAATAAATGG TATATGTGGTTATTAAAATAGTAACTGGAGGTATGATATTATAATCGCTCTTTCATAAATTTTTGTTTTGAAATACACTC CTTTCATAAATTGATAGTTAGAAATTTTCAATTTTATTAAAAAGGAAAAATTGATCATTCAATGATAAGTTATTAAGAGG TGTAGTGTATAAAATAGGAGTGTTGAAGATTTTTTCCATAAATAGAATGGCTTGAGTAGTCCAAAAGGTGTTTAAATTTT GAATTTAAATTTTATACAATTATTTGGAGTTTTGGAGACATTGAAATTCCAAAATATCTAGACAAGGGTTTTTATTGTCT AAAGGGTGGGTCCAAACATGACATTTTTTCATATTTAAATTTGAGTATTTGAGACTTTCAAAAAAATAGTTGGGTATTTG AGTATGGGGACATTATTAATTGACTATTTATAGTGAAGGGTGTTTTGGTCATTTCAAGAGGAATTTGATTGTGTCGGTGA CACGTGGCACATCACTTCCTCTTTACTCTTCACCATTGGGGCTGCGCTGTCTCAATTATTTGAACCATCATTATTGGATG TCATGTGATTTTGCATGTGATGATCACGTGATGTTACCACCCACATAAATAATGATTAATGAGGATTGAAAAAAAGTGGT CACGGTGGATAGCAGTAGCAACTACCAACCCATGTTTTCATGTTTTTTTTAATACATTAGCACAAATTCTTATTCTTCAT CATGCTTAGCACGTTACATGTTTCATATTTGTTCTTTGTTGAAATTTTTTTAGAATCAATTCTAGTCCAAACCTAGCATG TTTGGATTGACTTATTTTTTTCAGAATAAAAAATGTAATTAAAAAGTTACTTACAGAAGCTTATCCGTAGAATTAGTCCC GACTTTAAAATCAATTGTAGAAGAATTTTAGAAAAATGTGTTAAATGTGTATTGAGTTATGTAATATGGTAAAGGGTGAT TCTGATTTTGACCAATGTGTTGTTAATTCCAGTATGAAGACATTGTCCAATTGGAATGGCTGTCAAACTTTGTGGAGGAC TCATATGGGGGTAGCCTCACCATGAAGAAGGTGGAGCATCAGCAACCATCATCCACCATCACAACCAAAGAGGATTCAGT GCACAACCAGTTCCAGACATCAAGCCCAGTTTCTGTCTTAGAAAGCAGCAGCTCCTGCTCCGGCGGGAAGCCGGCAGAGA TTTACATCCCTGTCCCTTGTGGGCGCGCACGCAGCAAGCGTCCGCGCCCTGCGAGCTTCAATCCTCGCTCTGCCATGCAG CTCATTTCCCCTGCTTCCTCTTTTATTGGGGAGAACAACACCATGAAGCCTAATTATCATCATCATGTCAGGACCTCTTC AGATTCTGAGAATTTTGCTGAGTCTCAGCCTGTGATTACCAAGATGATGATGCCAAAACAGGCTTCTGGGGAGCCTAAGA AGAAGAAGAAGATCAAGGTTCCACTTCCACTTGCTCCATCTGATGGAAACAATATTCAGAATGGTTCACAACCGGTCAGG AAATGCATGCATTGTGAGATCACCAAGACTCCTCAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTG CGGCGTTCGCTACAAGTCTGGCCGCCTCTTCCCTGAGTACCGGCCTGCCGCCAGCCCGACATTCTGCCCGGCCGTGCACT CGAATTCCCATAAGAAGGTCCTGGAAATGAGATGCAAGGGTGAGGATTCTGGCCTTGCAGATCAGCCTGAACTTATTCCA AACACTAACAGCAGCCTCACCCTGGAGGAATACATGTGAGGGGGGAATCATCCTAGTTGGGAATTTCTCAATTTCAATGC CAGTGCCTCCTCTAATGTCATGTCTTAAGTTGTTTTGTTAAGGATATTTCATTTCTTTTGTTCATTGGTTTTTGTACAGG GTTGGTCTGGGGGAAATAGGAGCAAATAGATGATGATGATGATGATGATCATAATTTAGATGTTAGAGGAAGATTGTAAT CAGAAGTGGAGAAAAAAGGGGTAGTGATATGGAAGTCAAAAGAGGTTTAGAGTCTTTAGGTCTAGTAAGTGTAGGTCCCT TAAGGTCATTAGGAGTTGGTGTCCCTGTTGTCTTCCTTTCTTTTCTTTTCTTTTTCTTGCCATTCTTTTCATTTTTTCTT TTTTGCCTTTTTATATATATCCCTCTTTGTGGGAATTCTTTTTGCAGTTTATTTGTAGCAAAAATTCTGAGTTAAGAAAC TTAAAATTTGTGTTGCCCTGTTTGCTTTCTACTAATCACTTTCTTGTTCTGCTAATATCCTCTCCAACGTCTCTATACAT ATATCGGAGATATAGTGCATGTTTGAAAATCACTTTCATGAGTAGCTCCTTTGTTCCAGAATTGATAATGAGGAAAGAGA ATTTAAAAGTTAATACACAAATGGTAATAGTTTTGAGTAAATCTTGATGGTGAAGTGTATTGGAAGGTGGAGAGTATCTT GGAGACTGTCAACTTGCCTTATTAGATTCTTTCAATGTTGCACATATTCTTGCTAAGCAAAAATGTACCCAAAACACAGG CATTGCTTTCTGCTCTGCAGTTGGGTCTGACTGCTAACTGCTCATAAAGGATAATTGCTCTTTCAACAAATTATTATGTT AAAAATAGTGATGTGAAAGAAGTTTTCTAGTTCATTAATAATTTACAGTGTGTTGCTTTTATGTTAGGGATC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0274000.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTGGACCAAACTTCATGGACGAGTTAGACTGCGGAAGCTTCTTTGACCACATCGACGACCTCCTCGATTTCCCCGT CGAGGACGTCGACGGCACCGCCACCACCTTACCATCCGCCGCCGCCGCAGCCGCGAACTGCACCTCCCTAGCCAGCATCT GGCCCCCAGAAACCGACTCGTTTCCCGGCTCCGACTCGGTGTTTTCCGGCAACAGCGGCTCGGACCTCTCGGCGGAGCTC TCTGTTCCGTATGAAGACATTGTCCAATTGGAATGGCTGTCAAACTTTGTGGAGGACTCATATGGGGGTAGCCTCACCAT GAAGAAGGTGGAGCATCAGCAACCATCATCCACCATCACAACCAAAGAGGATTCAGTGCACAACCAGTTCCAGACATCAA GCCCAGTTTCTGTCTTAGAAAGCAGCAGCTCCTGCTCCGGCGGGAAGCCGGCAGAGATTTACATCCCTGTCCCTTGTGGG CGCGCACGCAGCAAGCGTCCGCGCCCTGCGAGCTTCAATCCTCGCTCTGCCATGCAGCTCATTTCCCCTGCTTCCTCTTT TATTGGGGAGAACAACACCATGAAGCCTAATTATCATCATCATGTCAGGACCTCTTCAGATTCTGAGAATTTTGCTGAGT CTCAGCCTGTGATTACCAAGATGATGATGCCAAAACAGGCTTCTGGGGAGCCTAAGAAGAAGAAGAAGATCAAGGTTCCA CTTCCACTTGCTCCATCTGATGGAAACAATATTCAGAATGGTTCACAACCGGTCAGGAAATGCATGCATTGTGAGATCAC CAAGACTCCTCAGTGGAGGGCAGGGCCAATGGGGCCGAAAACACTCTGCAATGCTTGCGGCGTTCGCTACAAGTCTGGCC GCCTCTTCCCTGAGTACCGGCCTGCCGCCAGCCCGACATTCTGCCCGGCCGTGCACTCGAATTCCCATAAGAAGGTCCTG GAAATGAGATGCAAGGGTGAGGATTCTGGCCTTGCAGATCAGCCTGAACTTATTCCAAACACTAACAGCAGCCTCACCCT GGAGGAATACATGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0274000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVGPNFMDELDCGSFFDHIDDLLDFPVEDVDGTATTLPSAAAAAANCTSLASIWPPETDSFPGSDSVFSGNSGSDLSAEL SVPYEDIVQLEWLSNFVEDSYGGSLTMKKVEHQQPSSTITTKEDSVHNQFQTSSPVSVLESSSSCSGGKPAEIYIPVPCG RARSKRPRPASFNPRSAMQLISPASSFIGENNTMKPNYHHHVRTSSDSENFAESQPVITKMMMPKQASGEPKKKKKIKVP LPLAPSDGNNIQNGSQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPAVHSNSHKKVL EMRCKGEDSGLADQPELIPNTNSSLTLEEYM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PIRSF
PIRSF016992
3 344 342 6.1E-73
IPR016679
PANTHER
PTHR45658
3 344 342 1.1E-136 –
PANTHER
PTHR45658:SF51
3 344 342 1.1E-136 –
MobiDBLite
mobidb-lite
224 254 31 - –
SMART
SM00401
255 305 51 1.7E-16
IPR000679
ProSiteProfiles
PS50114
255 291 37 11.583
IPR000679
Gene3D
G3DSA:3.30.50.10
255 306 52 6.7E-14
IPR013088
SUPERFAMILY
SSF57716
259 318 60 9.5E-15 –
CDD
cd00202
260 317 58 1.2753E-14
IPR000679
Pfam
PF00320
261 294 34 6.3E-15
IPR000679
ProSitePatterns
PS00344
261 286 26 -
IPR000679
MobiDBLite
mobidb-lite
330 351 22 - –
MobiDBLite
mobidb-lite
335 351 17 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of
GO:0045893
Biological process Positive regulation of transcription, DNA-templated Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Positively regulates

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0274000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…