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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0283100 |
Transcript ID | LotjaGi5g1v0283100.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Receptor-like kinase; TAIR: AT1G71830.1 somatic embryogenesis receptor-like kinase 1; Swiss-Prot: sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1; TrEMBL-Plants: tr|A0A0S3SNE1|A0A0S3SNE1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0283100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:59958904..59963121) extracted from Lotus japonicus Gifu genome v1.2.
TCAATCATGGAATTTGCCAGACCCTTCCAATTATGTTACAAATTGTTCTTGTGTTTCTGATTATATGTTCTTGTGTTTTG AACAGGTGATGCATTACATAGCCTGAGGACAAATTTACAAGATCCTAACAATGTTTTGCAAAGTTGGGATCCTACACTTG TCAATCCATGCACATGGTTTCATGTAACATGCAACAATGATAACAGTGTCATAAGAGTGTAAGCTGCTTGTTCTTTACAA TCGTCACAGATTTGCTCATACTTTCCAAACAACTTCTTCTCAGAGAACGACTTTCTAATGTTCACTTCTGTTTTTTTTTT CTTCCCTTTGGTTGATGTCAGTGATTTGGGAAATGCTGCTTTGTCTGGTCAACTTGTTTCACAGCTTGGCCAACTCAAGA ATTTGCAGTATTTGTATGTTATCATGATCCAATGCTCTTTTCCTTTTATCATTATAATTTTCTATGGGCTTGGTTAATAA GTGATAACTATTGTTTCAGTTTTCTTGTTTCTCATTTATTTTTTTTTCCCTATTGTTTTCTTGTTACATAACAGGGAACT TTACAGCAATAACATTACCGGCCCAATTCCAAGTGACCTGGGGAATCTTACTAACCTGGTGAGCTTGGATCTGTACCTAA ACCGTTTCACTGGCCCTATCCCAGATTCGTTGGGCAAGTTGGCAAAGTTGCGTTTCCTGTGAGTATGCCTATTTTTTGTG CTAAATTTCATTCTTTTTGTTCATGATACTTCTTTTGTGTTGTATACATTGTTTCTCTTAGTGTGTATTAGGAAATAAAT ATGCTCTCAAGTCAAGTTTTATCTTACTGAGGTCAGATGTTGACGTGATTAAAGAACTTCTATAAGAAATTTGAAATTTG AAGCTACATTTGGAGCGTGCTACATCCATAAAGACTGATTTGGTGTGAATTATGTGGATGTTGACTGCTGAAAAAAAAAT AGCAGTATTGAAATCTGTTTTATCATTTATTTTTGGAAATATAAACCATTAAAGAGAACATGTTACTGAAATAGAAGTGA ACCGGTAAAGTGAAAAAACACTTATGTTACTTAATTTGCTATCGTTTTAGTGAATAGTATAAGCATGTGTTCCGGCGTTC GTGAATCTCCATTTTCTTATTTATCTGGGTATCGGGATAGATCTTAATACTGCTCTTCTGGTATGTTTGTCTAAGGATAG CCGGCTTAACAACAACAGCCTGAGTGGTCCTATTCCCTTGACACTGACTAATATTTCTTCTCTCCAAGTTCTGTAAGTGT TACTTCATCTCAACATATGCATTTCATTTCTCTCTTCATTACTTGTATGCTATACTAATATAATTTTTTTTACTTGATTC TTCAAATGTAGGGATTTGTCTAATAACCGTCTCTCAGGTCCGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCTAT CAGGTTTCTGACTTAACTTTTGTGTTATCCATTGGTTTGATTTGTAAAATTTACTGACGGAGCTTTCTTTCTGCTTTCAG TTTTGCAAACAACTTGGGTCTGTGTGGACCAGTAACTGGGCACCCTTGTCCAGGCTCTCCTCCATTTTCTCCTCCGCCTC CATTTGTCCCACCACCCCCAATTTCTATCCCAGGTAATCTTTTCTCTGCTGCATGCTCTTAATTATAAATGTTATTTTCT TAGCCTCGATTGTAACTTAAAGCATGGGAAATTGGGAAGGGCAATTGCTATTTTTTAAGAAGGGTTTCTTCTAGGGGCTC ACTTTTTTAACTTTTTTCAATGAACTGATCGTTAGTTATGGGTGTAAATATTATGTTTTTCACTAGCTCTTCTGTTCCTT TGTGAGATAGTTTCTGTTGTTTTACATAGGTAATGTCTGTAATAGGTTTTTGTTTTTCTTTGGCGGGTTTGGTTTTGGCA TGACGCTGTGGCTTTATGGTCTGTCCTTTGTCGGGAGGACTTGTATCTCGGCTCGATTATTATTCAATATATCTCTGGCT TCGGAAAAAAAAGTGGTTGTGATAGGTTTAAGATCTGTTTATGCTGCTACATGGTTTTTATTTGTATATGTATGTATGTG ATGATAAACATGAAGAGAAGAGAAGCACTGATGTTTCAACCTTCCTATATCCAATTGCAGGAGGTAATAGTGCCACTGGG GCAATAGCTGGAGGAGTTGCTGCAGGTGCTGCTCTATTGTTCGCTGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAG GAAACCGCAAGAATATTTCTTTGATGTGCCTGGTGAGAAATCCTAGTTGAACGACAACTGCATTAGTTGAATTTGTTTGA AGGATAGATTTTGATATCCTTGCATATATTTGCAGCTGAAGAGGATCCTGAAGTCCATCTTGGGCAGCTTAAGAGGTTCT CATTACGAGAACTGCAAGTTGCAACCGATACTTTCAGCAATAAGAACATTCTTGGGAGGGGCGGATTTGGTAAGGTGTAC AAAGGACGCCTGGCAGATGGCTCATTGGTTGCTGTCAAAAGATTGAAAGAGGAGCGCACACCTGGGGGAGAGCTTCAGTT TCAGACTGAAGTAGAGATGATTAGCATGGCTGTGCATAGAAATCTCCTGCGCTTACGTGGGTTCTGTATGACACCAACGG AAAGGTTACTTGTGTATCCGTACATGGCTAACGGCAGTGTTGCCTCGTGCCTAAGAGGTGAACCCTCTGCTTCTTTCTTG CACTTGCTATTTCTTGTCGTGGCATGTTCAAACAATCATAATGAAAAGGAGAAAAACTTCACGTCTGTGCGCCTGTGGTT TGTTCAAGTCAAAACTTTTGGTTTAACAGAAACCCCTAGCTTCCAAACCTGTAGAGGTCTTTATGGCTTTAGCTCTTTTT CTTATTTGATGTCCGTACATCCTTCAAAGCATAGTTTCTTGGCCATCTTTGATTTTTTTTTTTAATTGTTTGTTAACTGC CAAACTTCACTTTAAATCTGATGATCCTTCAGCTTGGAGAAAATATTATCTAGGCTTTTTTTTGGGGGAGGGCTGGAGTT TCTATAGGAAAAGTGTATTCCCCAAATTCCCATAATTCAATCCAACAAGAGAAGAAAAAGCAAAAACACAAGTAAATGAA CTGGTTTTTATAGATATATTAGCTTCAATGCCAAACTTGAGGAAACTCCAAGGTGTATAGTACTATAGTGACAGATCTAT GCCTTGTGCCTCATAAGGTTTTTTTTTTTTTAATTAAAGAATCGGCGAGTGAAATGTAACTTAAGCTAGACCACAGGTAA GGAAACTTGTACTGTGAACCCATCTATACTGATTGTATGCTAAACGTTTCAGTATTTATTATTTTCTTGTGATTTTGTAT TTGCATTTTTCTAGAGCGTCCTCCGCATCAAGAACCCCTGGATTGGCCCTCAAGGAAAAGAATAGCTTTGGGATCAGCAA GGGGTCTATCGTATTTGCATGATCATTGCGACCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAACATATTGTTGGAT GAGGAGTTTGAGGCTGTTGTTGGGGACTTTGGTTTGGCAAAACTAATGGATTACAAGGACACCCATGTGACAACTGCAGT ACGGGGCACAATCGGGCATATAGCTCCCGAGTACCTATCTACTGGTAAATCTTCAGAGAAAACTGACGTTTTTGGTTATG GTATCATGCTTCTGGAGCTGATTACTGGACAAAGAGCTTTTGACCTTGCTCGGCTTGCAAATGATGATGATGTTATGCTG CTTGATTGGGTATGTTTAATGCAAAAACATGTCCTTCTGTTTCTGTGAATCATAGTTTACCTTTAGAGTTAAATCTCATG CAACCCTTCAGTAATTGTCAATAATGTAATGTTGAAATTTGACAAAGCTGAACATATTCATAGGTAAAAGGTCTTCTGAA AGAGAAAAAGCTTGAAATGCTGGTTGATCCTGATCTACAAACCAACTATATAGAAGCTGAGGTAGAACAGTTAATCCAGG TTGCACTGCTCTGCACACAAGGTTCCCCAATGGAACGACCAAAGATGTCGGAAGTGGTGAGAATGCTTGAAGGTGATGGC TTGGCAGAAAGATGGGATGAGTGGCAGAAAGTGGAAGTTCTCCGCCAGGAATCGGAGCTGGGCCCTCATCCCAGTTCTGA TTGGATTGTTGACTCAACTGAAAATCTACATGCAGTTGAATTATCTGGTCCAAGGTGA
CDS sequence (LotjaGi5g1v0283100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAGCATGGCTGTGCATAGAAATCTCCTGCGCTTACGTGGGTTCTGTATGACACCAACGGAAAGGTTACTTGTGTA TCCGTACATGGCTAACGGCAGTGTTGCCTCGTGCCTAAGAGAGCGTCCTCCGCATCAAGAACCCCTGGATTGGCCCTCAA GGAAAAGAATAGCTTTGGGATCAGCAAGGGGTCTATCGTATTTGCATGATCATTGCGACCCAAAGATTATTCATCGTGAT GTGAAAGCTGCAAACATATTGTTGGATGAGGAGTTTGAGGCTGTTGTTGGGGACTTTGGTTTGGCAAAACTAATGGATTA CAAGGACACCCATGTGACAACTGCAGTACGGGGCACAATCGGGCATATAGCTCCCGAGTACCTATCTACTGGTAAATCTT CAGAGAAAACTGACGTTTTTGGTTATGGTATCATGCTTCTGGAGCTGATTACTGGACAAAGAGCTTTTGACCTTGCTCGG CTTGCAAATGATGATGATGTTATGCTGCTTGATTGGGTAAAAGGTCTTCTGAAAGAGAAAAAGCTTGAAATGCTGGTTGA TCCTGATCTACAAACCAACTATATAGAAGCTGAGGTAGAACAGTTAATCCAGGTTGCACTGCTCTGCACACAAGGTTCCC CAATGGAACGACCAAAGATGTCGGAAGTGGTGAGAATGCTTGAAGGTGATGGCTTGGCAGAAAGATGGGATGAGTGGCAG AAAGTGGAAGTTCTCCGCCAGGAATCGGAGCTGGGCCCTCATCCCAGTTCTGATTGGATTGTTGACTCAACTGAAAATCT ACATGCAGTTGAATTATCTGGTCCAAGGTGA
Protein sequence (LotjaGi5g1v0283100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPPHQEPLDWPSRKRIALGSARGLSYLHDHCDPKIIHRD VKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLAR LANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYIEAEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAERWDEWQ KVEVLRQESELGPHPSSDWIVDSTENLHAVELSGPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PIRSF | 1 | 244 | 244 | 2.3E-26 | – | |
ProSiteProfiles | 1 | 240 | 240 | 28.994 | ||
SMART | 1 | 227 | 227 | 5.8E-10 | ||
Gene3D | 1 | 30 | 30 | 1.3E-5 | – | |
PANTHER | 3 | 261 | 259 | 1.2E-135 | – | |
PANTHER | 3 | 261 | 259 | 1.2E-135 | ||
Pfam | 5 | 225 | 221 | 2.5E-33 | ||
SUPERFAMILY | 5 | 228 | 224 | 6.52E-59 | ||
Gene3D | 31 | 247 | 217 | 1.2E-68 | – | |
ProSitePatterns | 76 | 88 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
Molecular function | Transmembrane receptor protein serine/threonine kinase activity | Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: ATP protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate. | ||
Molecular function | Signaling receptor binding | Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. |
Expression pattern of LotjaGi5g1v0283100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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