Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0285200 |
| Transcript ID | LotjaGi5g1v0285200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|I3STK0|I3STK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0285200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60154740..60159650) extracted from Lotus japonicus Gifu genome v1.2.
TACCACTTTGAAAATGAGACTCACTAATTTAGTGAGATCACATGAATTTGAACCAATCATAGAGATAGTGTTTGAGAGAG TGTACAAAAGAGAGTGTTGTTTTCATAAGAATTATCATGTCAAATCTAAAACATATTTAATGTTCGATTCTAAATACCGT GAAATATGATTTGGTGGGAAAAGTGTACTCATGAGAATCTAAACTCATGCATGCTACCAATAATACTACTAGCATGTACT ATTATTAAGTGCTACTAGCATGCCAGATCACAATATTGAATTATCTACTCATGTTTTACCAAACAAGGATGGGTGAAGTT GATTGAATATTTCGCACGTTGTACACATCATCCATACCAAAAATGCAGACAGCGATCGGAAATGGCGTCCCTTTTCCCTT TCTGTGCTGGAAGCTGACCCCCAAACCAATAACCCAATAAACAACACCAAAACGAGCTTCAAATCACCGATTGCATCCCC ACCCAGTACCCACCGTAACCAGCCATGTCAACGCGCCGGCGAACCTTGCTCAAGGTCATTGTCCTCGGCGATAGCGGGTA AGTCTTAGCATTTCCCTGCAACTCTGCTTTTGGTAACGCAATTGAATTCACTCACCCCTTTTTCGTTCATTGCCATTGTC AGGGTGGGAAAGACCTCGTTGATGAATCAGTATCCTTATTCCTCACACGCCGGTTCGGTGGCAGTTTGGTAATTTTATGC GTAATCGTTTCTGGGTTTCTGCTAATTTACTCCATCTTTGATACCCTTGTCCTAAAGTTTTGATTTTGATCACGTTTGGC TTAATTTTCTAGTTTACTTTTGGGTTCCTTAATAAACTTTCTCATGTTTGACTATTGTAAATGAACAACTTTTTGACTTT TCTAGGTTAAATCAGTTTGACCAGCGTGAAGCTCAAATGTATTAGACAAAAAAATATTGGCTTTGGATTTAGAGGTAGTT TAGATAAACTCTTCAATAAGCATTTATAGGGAAAGTAATGTTTTAAATTGCGGTTGCGATTCTGGCATTGTGGAAGATTG CAGATAAATGCGACTAATGCGTAGGTAATTGCAATCATGGCCTCATGGGAGGCCTCCAAAAGTTGCGGACCGTGAATTAA AACCTTAGGAAAAGTTGAAATGAAATTCCAATAATATGGTTGAAATCAGCTTCTGTACCTTAACTTAGAACTCCGAAGCT CCCTTGTCTTACCTTGCTACAAATATGTATATAAACTTGGGACTTTTCTTAAGTTAGAAATTGAATTTTTAAGAAGCTCT TATAAACTAGAAGGCAATCCAAATTGGCCTTAATAAGGGTGCTGTAAGGCCTTAGTTCAATTAAGGCTTCTGAGAAGTTG ATGAGTTTTGCGTTTGAGGTCAATTTAATGATACTTCTATGGTTATTCCTTTCATGGAATTTAGCCTCTGTGGACCGTTA ACTAAATTGTATAGATATGTGCACAAGAGGTTTAGTCAGCAATATAAGGCTACAATTGGTGCGGATTTTGTCACTAAAGA ACTCCAGATTGACGACAGACTCGTCACTCTACAAGTGGGTTTCCCATTTCAATGGTATTTCAGTATTTATTTGTTTTTTT GTTTTAGGATTATTTTGAGACTTGTGTGTATTTGAATGTTTTGTATGTCTGATTGGTAGATATGGGACACTGCTGGGCAA GAGAGATTCCAAAGTCTTGGAGTTTCATTTTATAGAGGGGCAGATTGCTGTGTTCTAGTTTATGATGTGAATGTGATGAG GTCATTCGATACCCTTGACACCTGGCATGAGGAGTTTCTCAAACAGGTTATTCCTGTCCTTTTCTAGATGCTACTTTTAT TGCATGTGTGCTTTGAATTATAGTTTGCATATTTGGTTCTGTATGTGATTTTTTCTTGATATTTTATAGCCTATGGTTAT GAAGATACACTTCCAGTTTAGTTTGCTCATTATGCCCTGGATCTCATAATCGTTTTGTATTTTGTTCTAATTCTAACATA AAAGTCAGAATCTTGGCATCAGCAAATGAAAACAAATTTAGACTCTTCTTTCAACTTTTTGCAGCCTTAATTCACCTTAC AATTTATTGGATTTGTCCCTCTTATATATGACCTACAACCATTGTACCTTGCTAGATAAGCTTTCTCTGAAGTTTTATAT TTTCATTGTGACGCAGGCAAACCCTCCTGATACGAGGACATTTCCATTTATATTGCTTGGAAACAAGATTGATATTGATG GTGGGAATAGTCGAGTGGTAGGAAGATTTTATCACACTTCTAAGCTTCCTTATTTTATTTGAAAATGTCTAAACTATCTT ATGTGCAGGTCTCTGAGAAGAAAGCAAATGACTGGTGTGTTTCAAAAGGGAATATCCCCTACTTCGAGACATCTGCAAAA GAGGATTACAACGTTGATGCTGCATTTCTCTCTATTGCCAAGACTGCTCTAGCCACCGATCGTGAACAGGACATGTAAGT TGTCATGCACATTTACATTATCATATATGGTAATCAATAATTCAAGTAAGACGAAGAACTAGGACTATTATTATGAACTT ATTAAGTTACAATCATGTTGGGCTATATTTATGACTGGATCAATCTATTTTGTTTATTTCTAACCAGAGCAATGCTACTT AGTGAATATCTCTGTCCAGCTCTATAGCTGGATAGAGACACTCAAACTGGTAAAAACTAACTTCACTCTCCTCACTCCCT GTAAAATATCTTGGTTTTTCTAGAATACTCTTCCAAACCATAGGTCTAGAATAGTACTGTGCCTGGTTTAAACTTAATAT ACAGCGAACATGCTACAGGGAACTTAATAGAGGGTGGTTCCCTGTTGTGCATCGCATGTCACATGTAGCTGTTCTTTTCC CAAGGTTTTAACTTAATGTAAAATGTCTTTTTATTCTATCTTAAATTTTATGCAAAATAATAAATACTTGGGAGGATAAC CTTTTGTTGAAAACCTCCTTAATCAGCTGCTATAGATGATACATATGAAAGAAATTGATCTCTTTATGACCTCCATCTTA TGGAATCGCTAGCTGTATATGCGATAAAGAAATTCCTAAACCTCCACCCATCTACGGAATATTGGTGGTTTGTACAAGTC ATTGCTTGCCACTCATATCAAATATGAGATAATCTCAAGCCATTGACATGTTAATTAAAAATTCAAAAATCATAGCTAAC TATTTTTGTGAACAAAAGAAAAAGCTAAGTCTCATTCATTTTCTTAGAAAGCAATATAAGCATATATGTCCATCAAGGGC AAGAAATTATCTGACTAGGACTTGATTAGCCATATGGAAAACCCATAGCGTCACAGAATATTTCCATTAAAATCCATCCT CTTTTAGAATCTTCGCAACTTGTTCTTCCATGTTGTCAACTGGTTTTTTAAGCTTCTACAATTGTATGTGGCTTCTGTAA TGTCATCATTGCTGTTTTAATATATTGAACTGACTTGAGAAATAAACTGATTTGACTGAATTACTTGTGAGATTATTTCT CAGCACTTTGAATTTTTATTTACCATGATACAAAATTGAATCCCTTAATACCAGGGATTTAAATACAGCCACTAAATCCG TTTCGTAATCTAAATCATATTTACAGTTAATCAAATTGATAGAATGCAGAGAGAGAAATCTTATGAACGAAGATTTAGAA ACTGGAATCTGAATTCATCATTCAATCTGAAGTACAAGTAGATAACTTATAGTACGTGTCTGGTCAGTTATTAACAGTAA CAGAAGTACAACAGTAATAGCAATCTAACAAAGTTACTAACAGACTTAATACAACTGAGACATAGCTAAGCTTATTCATA CAATAACATGAATTAATATATTCAATGTAAGAGCAACATTAAGAAAATAAGGAATACAAACTCCATAAGATGTATGTAAT AGATGTCTTTCTCTTGAATTTTTTTCCAGGTTGTAGATTGCTTTGGAAGAAAATTTGCTAAAATTGATAACGTTCTTCTA GCTTTTATACACACAAAATAGGCTAGCTATCTTATATGGAGATATTCTTGATGATGCTCTATTTTCCTCGCGACTAATTA AGTAATCATGTATTACCCTCAATGGACCGATAAATACCATTATTCTATTCAATATGCTTTAGTTGGTTTTATGAATATGT ATACTTGCTAAAATTTCCTTTTTTTGAGTTCTCATTTCTTAGTCAATTTGGCCTAATAAAATTTTCAGATTGAGATATTC GCAGATAGCTGCTAATTAACTGACTTCTGAACTCATTTTTTAAAATTCTTCGCAGATATTTTCAAAATATTCCAGAGGCG GTTGCTGAGAGTGAGCAGAGGGGTGGATGTGCATGCTGATATAGAGATACTGAATGATTTTAGCCACTCACCTTAATGCT GTGGTTCAAATTCTTCAAATTCTTTTTGATGATATAGTGTACACTGTTTGCCATGATTGTGTGAGTAAACCATGTACCTT GATGTTGCCATTTTGATAAATTGTGCTATTGTAGTCCTGTTTTTTAGTGAAGGACGAGCTTGAGAATGTTGCACTAAAAG CATGTTGTATTGACCACGAATTATATAGGCTTAAAGTGCTTTTTTTTAATCTTCGATTGTCAAATTGAGATGTGGAATGG AATGTTAATATTCTGTTTTCCTAATGTTGGAGGGAGGGATAGGATCTCAAGTCATCTCTCCATGATTAATCATTGCTGGA TATGATTTTGATTTGTATATGGGTTCTATCACCCATTAATAAATTAGGTAGAGAATGTGACATGTAAAGCAGAATGAGAA ATGAAAAAGCCAACTTGGACTGGCTAAAAGAATTCAAGAGTTGGATAAGATTGTGCACATCAATGATTCATTTAAAAAGA AAACGAAGTAGAAAACTTTTATTTTGTTTCT
CDS sequence (LotjaGi5g1v0285200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACGCGCCGGCGAACCTTGCTCAAGGTCATTGTCCTCGGCGATAGCGGGGTGGGAAAGACCTCGTTGATGAATCA ATATGTGCACAAGAGGTTTAGTCAGCAATATAAGGCTACAATTGGTGCGGATTTTGTCACTAAAGAACTCCAGATTGACG ACAGACTCGTCACTCTACAAATATGGGACACTGCTGGGCAAGAGAGATTCCAAAGTCTTGGAGTTTCATTTTATAGAGGG GCAGATTGCTGTGTTCTAGTTTATGATGTGAATGTGATGAGGTCATTCGATACCCTTGACACCTGGCATGAGGAGTTTCT CAAACAGGCAAACCCTCCTGATACGAGGACATTTCCATTTATATTGCTTGGAAACAAGATTGATATTGATGGTGGGAATA GTCGAGTGGTCTCTGAGAAGAAAGCAAATGACTGGTGTGTTTCAAAAGGGAATATCCCCTACTTCGAGACATCTGCAAAA GAGGATTACAACGTTGATGCTGCATTTCTCTCTATTGCCAAGACTGCTCTAGCCACCGATCGTGAACAGGACATATATTT TCAAAATATTCCAGAGGCGGTTGCTGAGAGTGAGCAGAGGGGTGGATGTGCATGCTGA
Protein sequence (LotjaGi5g1v0285200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTRRRTLLKVIVLGDSGVGKTSLMNQYVHKRFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVSFYRG ADCCVLVYDVNVMRSFDTLDTWHEEFLKQANPPDTRTFPFILLGNKIDIDGGNSRVVSEKKANDWCVSKGNIPYFETSAK EDYNVDAAFLSIAKTALATDREQDIYFQNIPEAVAESEQRGGCAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 191 | 190 | 1.1E-63 | – | |
| ProSiteProfiles | 4 | 205 | 202 | 32.159 | – | |
| SUPERFAMILY | 5 | 183 | 179 | 3.83E-54 | ||
| PANTHER | 6 | 204 | 199 | 1.0E-101 | – | |
| SMART | 6 | 179 | 174 | 1.2E-25 | – | |
| PANTHER | 6 | 204 | 199 | 1.0E-101 | – | |
| SMART | 9 | 179 | 171 | 1.2E-85 | – | |
| TIGRFAM | 9 | 169 | 161 | 6.1E-24 | ||
| CDD | 9 | 182 | 174 | 6.21466E-121 | – | |
| PRINTS | 9 | 30 | 22 | 1.2E-39 | – | |
| Pfam | 10 | 176 | 167 | 6.1E-55 | ||
| SMART | 11 | 179 | 169 | 2.1E-12 | – | |
| SMART | 14 | 194 | 181 | 8.0E-6 | – | |
| PRINTS | 32 | 48 | 17 | 1.2E-39 | – | |
| PRINTS | 50 | 72 | 23 | 1.2E-39 | – | |
| PRINTS | 116 | 129 | 14 | 1.2E-39 | – | |
| PRINTS | 154 | 176 | 23 | 1.2E-39 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi5g1v0285200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…