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LotjaGi5g1v0285200.2

Overview

Field Value
Gene ID LotjaGi5g1v0285200
Transcript ID LotjaGi5g1v0285200.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Ras-like protein; TAIR: AT4G09720.1 RAB GTPase homolog G3A; Swiss-Prot: sp|Q43463|RAB7_SOYBN Ras-related protein Rab7; TrEMBL-Plants: tr|I3STK0|I3STK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0285200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:60156042..60157217) extracted from Lotus japonicus Gifu genome v1.2.

ATTGGCCTTAATAAGGGTGCTGTAAGGCCTTAGTTCAATTAAGGCTTCTGAGAAGTTGATGAGTTTTGCGTTTGAGGTCA ATTTAATGATACTTCTATGGTTATTCCTTTCATGGAATTTAGCCTCTGTGGACCGTTAACTAAATTGTATAGATATGTGC ACAAGAGGTTTAGTCAGCAATATAAGGCTACAATTGGTGCGGATTTTGTCACTAAAGAACTCCAGATTGACGACAGACTC GTCACTCTACAAGTGGGTTTCCCATTTCAATGGTATTTCAGTATTTATTTGTTTTTTTGTTTTAGGATTATTTTGAGACT TGTGTGTATTTGAATGTTTTGTATGTCTGATTGGTAGATATGGGACACTGCTGGGCAAGAGAGATTCCAAAGTCTTGGAG TTTCATTTTATAGAGGGGCAGATTGCTGTGTTCTAGTTTATGATGTGAATGTGATGAGGTCATTCGATACCCTTGACACC TGGCATGAGGAGTTTCTCAAACAGGTTATTCCTGTCCTTTTCTAGATGCTACTTTTATTGCATGTGTGCTTTGAATTATA GTTTGCATATTTGGTTCTGTATGTGATTTTTTCTTGATATTTTATAGCCTATGGTTATGAAGATACACTTCCAGTTTAGT TTGCTCATTATGCCCTGGATCTCATAATCGTTTTGTATTTTGTTCTAATTCTAACATAAAAGTCAGAATCTTGGCATCAG CAAATGAAAACAAATTTAGACTCTTCTTTCAACTTTTTGCAGCCTTAATTCACCTTACAATTTATTGGATTTGTCCCTCT TATATATGACCTACAACCATTGTACCTTGCTAGATAAGCTTTCTCTGAAGTTTTATATTTTCATTGTGACGCAGGCAAAC CCTCCTGATACGAGGACATTTCCATTTATATTGCTTGGAAACAAGATTGATATTGATGGTGGGAATAGTCGAGTGGTAGG AAGATTTTATCACACTTCTAAGCTTCCTTATTTTATTTGAAAATGTCTAAACTATCTTATGTGCAGGTCTCTGAGAAGAA AGCAAATGACTGGTGTGTTTCAAAAGGGAATATCCCCTACTTCGAGACATCTGCAAAAGAGGATTACAACGTTGATGCTG CATTTCTCTCTATTGCCAAGACTGCTCTAGCCACCGATCGTGAACAGGACATGTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0285200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTATTCCTTTCATGGAATTTAGCCTCTGTGGACCGTTAACTAAATTGTATAGATATGTGCACAAGAGGTTTAGTCA GCAATATAAGGCTACAATTGGTGCGGATTTTGTCACTAAAGAACTCCAGATTGACGACAGACTCGTCACTCTACAAATAT GGGACACTGCTGGGCAAGAGAGATTCCAAAGTCTTGGAGTTTCATTTTATAGAGGGGCAGATTGCTGTGTTCTAGTTTAT GATGTGAATGTGATGAGGTCATTCGATACCCTTGACACCTGGCATGAGGAGTTTCTCAAACAGGCAAACCCTCCTGATAC GAGGACATTTCCATTTATATTGCTTGGAAACAAGATTGATATTGATGGTGGGAATAGTCGAGTGGTCTCTGAGAAGAAAG CAAATGACTGGTGTGTTTCAAAAGGGAATATCCCCTACTTCGAGACATCTGCAAAAGAGGATTACAACGTTGATGCTGCA TTTCTCTCTATTGCCAAGACTGCTCTAGCCACCGATCGTGAACAGGACATGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0285200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVIPFMEFSLCGPLTKLYRYVHKRFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVSFYRGADCCVLVY DVNVMRSFDTLDTWHEEFLKQANPPDTRTFPFILLGNKIDIDGGNSRVVSEKKANDWCVSKGNIPYFETSAKEDYNVDAA FLSIAKTALATDREQDM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51419
1 177 177 26.888 –
SMART
SM00175
6 171 166 1.6E-65 –
SMART
SM00174
9 171 163 1.8E-8 –
Gene3D
G3DSA:3.40.50.300
11 177 167 2.7E-52 –
SMART
SM00176
11 177 167 0.0033 –
Pfam
PF00071
15 168 154 8.3E-46
IPR001806
SMART
SM00173
15 171 157 1.7E-11 –
SUPERFAMILY
SSF52540
17 170 154 2.02E-42
IPR027417
PANTHER
PTHR24073
17 172 156 9.4E-81 –
PANTHER
PTHR24073:SF586
17 172 156 9.4E-81 –
CDD
cd01862
19 174 156 6.68206E-104 –
TIGRFAM
TIGR00231
19 161 143 1.7E-16
IPR005225
PRINTS
PR00449
24 40 17 7.1E-28 –
PRINTS
PR00449
42 64 23 7.1E-28 –
PRINTS
PR00449
108 121 14 7.1E-28 –
PRINTS
PR00449
146 168 23 7.1E-28 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0285200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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