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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0286600 |
| Transcript ID | LotjaGi5g1v0286600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S1; TAIR: AT1G71720.1 Nucleic acid-binding proteins superfamily; Swiss-Prot: sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A; TrEMBL-Plants: tr|K7N3Z8|K7N3Z8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0286600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60319494..60325411) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAAGGAGAAGAAAGGCTGAGAGAGAGAGGCAGAGAGACAGGAAACCTCAAAAGGATAAAACAAAAACCAACATGTGT GTGCCTGAAAACCAAAGCTGATGCTGTGGTGCACCATACCAAGATGCCATTTATTCTTCATCCTTGCAAGTTCCTATGCT TTCAGTGTAGAATGCCAGTGAAGGACACCAGTTTTTTCAGCAACACCTTCATCAAGAAATCTCATACCAAAAGCCCATCT CCAGCTCCTCAGAAATTGCGTTCTTTTGCTGTTCTTTTCAATCCTCACTCTTCTAAAAAAGTTTCAATTTTGAGTGATAC CCACTTCACATTTTGCTCCAGAAATGGTGGGTTTGATGGGATTTCCAGTGATTTGTCTCCAGAGGCTAATGATGACGGAA CCCAAGAGCTTGAGTTGCTGAACAAGCCTTATCCTGTGCGTGTTGCAGAAGAGTTGGCTTCCGAAGCTGAAATGGACCAA GAGAAGCCTTCTCAGCAGGAAGCTTTGGCACCCTTTTTGAAGTTTTTCAAAGGTAGTGATTCTATGGAGGAGGTTGAAGA AGATGGTGATGTATTGCAAGTTTCTGAAGAAAAATATGTAGTGGATGGTGAGAATGAAGAAGAAGGAGAAGAAGAAGAAG AAGATAAGAAGGTTGGTGTTGAGTACTATGAGCCCAAACCTGGGGATTTTGTGGTGGGTGTGGTTGTTTCAGGTAATGAA TATAAGCTTGATATCAATGTGGGTGCAGACTTACTAGGTACAATGTTAACAAAGGAAGTGCTTCCCTTGTATGGCAAAGA AATGGAGAACTTGTTATTTGATGTGGAGAAGGATACAGAGAATTTTATGGCTCAGGGGAAGATTGGAATTGTGAAAAATG ATGAGGCATTAAGTGGAGTACCAGTGCCTGGAAGACCTGTTGTGGAGACTGGAACCATTTTGTTTGCTGAGGTTTTAGGT AGAACCCTTAGTGGTCGGCCATTGCTTTCTACTAGAAGGTTCTTTCGCCGGATTGCGTGGCATCGAGTGAGGCAGGTTTT TCTCTTTCCCCCATCATATTTGAGCTTTGTAGATATTCCAACTTCCATGTGTATGAGTTGAATTCAGTAGTTCGAAAGGA AAAGTTGGAAGATTTATTGTTGAGCAAACACTAGTTTTGGTCCATCAAGTATATACATTAACACAACATCACATTTGTCC ACCATTTGTTAGCAACATCAAATTGGTCCTCAATGAGTATAATCTCATCTATGAAGGATCAATTTGTGTCATTTGAATGA CCAATTTTGGTGGCAAAATTGTGACATTGAAGGATCAATTTGATGATTTGTATGACCAATTTGTTATTATAAACTGAGGA CTAATATGATTTGTACCTATTTTTGATAAAATGTGGTATTCACTTTTTTATCATCTCATATCAACACTGTAGGAAGATGT TACATCATATTTATACTGAAATCATTGTCAGAGAGGAAATATATGTGATCTAATGAAAAATTTTATGCCCATTATATTAT GATTGCTATATTAACATTATGCATGTTAGCAATCTTAACTTCGTAAAGTCAAAAATATTTTTCCCTTGCTGATAAGAAAT CTACAATTTTTAATGTTTGGGGCAGATACAACAGCTTAATGAACCTATTGAAGTTAGAATTACAGAGTGGAATACTGGAG GCCTGCTAACTAGGATTGAGGTCTGTGCCATTAACCTGGAATTTATTTTCACATGGCATTTGAGCCAATGCTTATCTATT CATGAATTTTGATGTTCAGGGTTTGCGAGCTTTCCTAGCCAAAGCTGAGCTTGTGAAAAGAGTGAACACCTTTACTGAAT TGAAAGAAAATGTAAGTTGCAGCCTTGGAACTTTCTTCCTGACAAGGGAAAGAAATATTTTTTTCTTATTGGAGTGGTTG TTTATAAGCTTCTGCTGGTACTCTGTGGTTGTATTATATGTTACTTAGTAGATAATATGTGGCTGCTTCTGAGTGTAATG TACGGAAGCTATATGATCTTTCCTGTCAATTTCAGTGTTTCCAATAATTGAAACTAGTTTCGTTTGAGCTTTAAACAAGT CTGTTCCTTAAACAAGTAGCCAATTTTTTTGACTATTATGTTGTGAATAAGTAAGAAATGTTGAGCATGTAGTCAAAATG ATGTCTTCTCTTATATTTCTCTATGTTGTTCTGTATTTTTAAACATACAGTTCAATTGATTTTTTGCATATTATGTTGGG GTTCAAACTTCAAAGCTTGAAAGGTGATGATCTAAAAGTGATCTAGCATAATACTTTATGAGCTTCCTCTAGGTAAATGA GGATAAGATCAGCTTATTACCTTATAAGAATCTCTGCTTCTTTGAAACCCTTTACCTTTTTTGGTTTCTTTATACCTACA AGAGTCCTATCCTATTAGTTAGTTAGTATACCTTTTTTTTTTGGCTACTATCAATCTTTATTTTTTCTTCTTTCCTTCTT ACTATTTTTATAATGATTCAGGTGGGGCGCCGTATGTATGTACAAATTACTCGAATAGATGAAGATAAAAATTCTTTAAT GCTTAGTGAGAAGAAAGCTTGGGTTAGTATTCAAATCTGTCGTTTTCCTATTCTTCCTTGCTTTCTTGCTTCAAATTTTA TGAGTTTAAGTTTTCAAATCTTACATTCTCTTTTTTTACATTGAAATTCCTGTTGTGCAAAATGATGTTGCAGGAAAAGC TATTTCTTCGCGAAGGAACACTTCTAGATGGGACTGTGAAAAAGATCTTTCCGTATGGAGCCCAAATTAAGATAGGAGTT TCTAACAGAAGGTGAGTGGACATTTGGATATAGTAACAAACCCTTGTGGCTTGTGCATCTTTTTCCTGTTTGGTATATCA CAATTTCCAAGTTGTTGGATGTTTCCAAGTCCTTTGGTTCTGCCACCGGTGTAAAAATGAAAACTTATTTCAGGTTGATT TCCTTGGCTAATGATAAAGATAGAAAACACACTCGATAAATTAGGCACACTGACATATAGGTATTTTCCTTACATAAAAA CCTGTAAATTCGTCTTTGAAATTGGTGGAATTGTTTTAAGCTGCATTATCACTAACGATATCCAATCATTACTATTATGT TTTCTTTCCATTTAATCCTGGCTGTAACAGCATTTGAAATTGTGAATCAATTTAAGTAGTCTTTTAAAAATATTAATTCA TGTTGTCAAATATCAACTCAACCCCAGATTTAGTTGTTAGGTTCAAGCACATGAATGTTTTATATCTCTCAAACACTCCT ACAAGGAAGAGGGGCTAAAATACAAGTTGAAGAGGCTCTAGTAACATGTTAAAGACTAATTTAATTATACCAAAAGCTTA AGATGATAGGTGGAAGCACATGATTGGTTTAAAATTTATAACACACCTCTGCCAAGTTGTAAGTTTAAGCCATTCCCTTA TGTTAGAGTGATATATTTTTTCTTGCATACCATGTACATTGGCTTGAAAATACCTCTCGCTACAAAATTATTTCTCTATC ACCAGTTTCTGAGATTTTCAATCCACTTGCTGGTATTGAGATTTTTGTAGGTTATGAGACCTATATAGGAAGTTTTATCA CCTTCAAGCTGATTAATAATCCTCTATTGTAAACTCGTTTCACTCTTGTAAAGAACATTTAGGAGAAGTGCAACTAATAA CAATAGGACTCCAATTAACCAACCAGAAAAATGAGAGCCAATTCTAAGTTTGTAATGGGCTCAAGTATCATTTTGTTTTC TCCATGAGCCCTTATGGAGCATATACTATAATTGGTTTGGCATTAGGAATCTCTTAGAGCATGTTTGCATTAAAGTTAGA AAAACATAAACTGACATTGAAAATTAAGGAGAAGGTGTGCTTCTTTGACGTTAATGACATCAGAAACTTTATTTTCATGT TTGAACTTGGAGCATCTACAACAAAGTAATTACTGCTTAATCTTTTTCTCTTATGACTCAGACCTCAGTTATACCTTATT TACAAATTATTAAAGAAGCAGAATAAAACCTGATCTTACAGGGAAAAGAAAACAAATTTCATCTGATAAGATCATTACTG ACAGAATATAACCTTTAAATTAGAAAGTTGAATTTCCAAAAAAATAATAATTGGGAAGCACCATATTCGGAATTAGTAAG GGGTTTTAGGGTTCACTCACACTTTGGAACAAAATGACACTGAGAGATGTAAATAAGTGTTTTCCTTGAAATTTCAAGAT GACACTGACAGATGTAAATATTTGCTCAATTGTCTGACTTGCTCAATTTGCACAATATCTATATCACATGATTTGTAACA GGTATAGGTGCAAGTTCATTGAACATCGATTCTTTTAGCAACTGAATTTGACAAATTAATGAAGTGGGTCAATACTAGTT CCTGCATAATGTTCTTCTTTGTGTCCCTACCTATCATTGTTTTAATATTCCCATGCACACATTTATCCTTAATTCCTTAT CATTCCCAAGATATCAACATCATGAATTTAACTTGTTAGAGGTGAATTAAACCTGTCCGTACACATCGACCTGACATTTA AAATGAACCTATTCGGTGCCTTTCAGTGGGTTGCTACATATTTCAAATATCAGTCGAGCTGAAATTACTTCTGTCAGCGA CGTACTTTCAGTTGATGAGAACGTTAAAGTTCTGGTGGTGAAGTCAGCATTTCCTGATAAAATTTCTCTGAGGTAATAGA TTTCAGTATTTAATTTTGTTCTGTAATTGCTGGTTGCATTTAGTTTGTTACAGTTTTAATTGGCCTCTATTAGTTAACCT TGATGAGGCTCATATTTCTACCCTCCCAGCAAATAAGAAAAATTCCTTACAAAAATAACACATCTCCATAAAAATGAGAT TATCATGAAATAAAAAGTGGTTTAATCCAACCTGAAAAGTGCAGCTTGTCCAATTATAGGACATGGTTGCGCCTCATGGC ATGAAAGAATAAACAGTGGAACTGAAGATGTATAAAACTTTCAACTAATAACAAATTAAGATGTTTAAGAACTTCATTAT AATGTAAGTTAGTGCTATAAATTGCTGCTGATGCCAATTTGCTTTTCTTACCATGCAGCATTGCAGCCCTTGAAAGTGAA CCTGGCCTTTTTCTATCAAATAAAGAGGTATTAATCTTTTATATACCTGTAAATATTTTTCTATTGTTTTAGTTGGATTG ATCATGATACATTCCTATTTATTTTTTACCATACAAAGAGAGTATTTCTGGAAGCTGAGATGATGGCAAAGAAATACAAG CAAAAGCTACCTCCTGCTATTACCACGAAACGATTAGACCCGCTACCAACTAGTGCACTGCCTTTTGAAAATGAAGCACT TTATGCAAACTGGAAGTGGTTTAAATTTGAAAAATAATGTTAGTCACAAAAGCAAGAAAATTATTCACCGACAGAAGCTC AATTGAGAGAACTTTGTGACTGCATGGATCATCAGGTTTGAAGACAAGCCTGCCTTTTTGAAAGATAATAGCATGAAAAG CCTCAGTGGAAAAGCTCCTTTAGGTGCAGTCATTGTTCTCCTGTGGTTTGGGCATGCATTGCATAGAGTTTTACAAGCCA TGTAACCCATAATTCACTTTTATTCTTTCTTTCATTTTTGGAGTTCTCCCTTTTGTCACGAAAAAAGGTTTTCTCTTTTA CTTGTATCTTAAAATTTTCTTCCAATAGATGGTGGATACATGCTGGATGTAAATTCTGGGATGAAATATTGTAGTTTAAT TTTGATTCATTGGCCGAGTAAAAATTTTTACACTATCATCTATGTGTTGACACTTCATTGAATGAGTTTGACCGTTCAGT GAGAATCAAAATTAATTCCAAATTGTAATTGCATTTATGTACTCAATTTTTGATGTGTTTTTCCATCTTGCTTTTCTC
CDS sequence (LotjaGi5g1v0286600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCATTTATTCTTCATCCTTGCAAGTTCCTATGCTTTCAGTGTAGAATGCCAGTGAAGGACACCAGTTTTTTCAGCAA CACCTTCATCAAGAAATCTCATACCAAAAGCCCATCTCCAGCTCCTCAGAAATTGCGTTCTTTTGCTGTTCTTTTCAATC CTCACTCTTCTAAAAAAGTTTCAATTTTGAGTGATACCCACTTCACATTTTGCTCCAGAAATGGTGGGTTTGATGGGATT TCCAGTGATTTGTCTCCAGAGGCTAATGATGACGGAACCCAAGAGCTTGAGTTGCTGAACAAGCCTTATCCTGTGCGTGT TGCAGAAGAGTTGGCTTCCGAAGCTGAAATGGACCAAGAGAAGCCTTCTCAGCAGGAAGCTTTGGCACCCTTTTTGAAGT TTTTCAAAGGTAGTGATTCTATGGAGGAGGTTGAAGAAGATGGTGATGTATTGCAAGTTTCTGAAGAAAAATATGTAGTG GATGGTGAGAATGAAGAAGAAGGAGAAGAAGAAGAAGAAGATAAGAAGGTTGGTGTTGAGTACTATGAGCCCAAACCTGG GGATTTTGTGGTGGGTGTGGTTGTTTCAGGTAATGAATATAAGCTTGATATCAATGTGGGTGCAGACTTACTAGGTACAA TGTTAACAAAGGAAGTGCTTCCCTTGTATGGCAAAGAAATGGAGAACTTGTTATTTGATGTGGAGAAGGATACAGAGAAT TTTATGGCTCAGGGGAAGATTGGAATTGTGAAAAATGATGAGGCATTAAGTGGAGTACCAGTGCCTGGAAGACCTGTTGT GGAGACTGGAACCATTTTGTTTGCTGAGGTTTTAGGTAGAACCCTTAGTGGTCGGCCATTGCTTTCTACTAGAAGGTTCT TTCGCCGGATTGCGTGGCATCGAGTGAGGCAGATACAACAGCTTAATGAACCTATTGAAGTTAGAATTACAGAGTGGAAT ACTGGAGGCCTGCTAACTAGGATTGAGGGTTTGCGAGCTTTCCTAGCCAAAGCTGAGCTTGTGAAAAGAGTGAACACCTT TACTGAATTGAAAGAAAATGTGGGGCGCCGTATGTATGTACAAATTACTCGAATAGATGAAGATAAAAATTCTTTAATGC TTAGTGAGAAGAAAGCTTGGGAAAAGCTATTTCTTCGCGAAGGAACACTTCTAGATGGGACTGTGAAAAAGATCTTTCCG TATGGAGCCCAAATTAAGATAGGAGTTTCTAACAGAAGTGGGTTGCTACATATTTCAAATATCAGTCGAGCTGAAATTAC TTCTGTCAGCGACGTACTTTCAGTTGATGAGAACGTTAAAGTTCTGGTGGTGAAGTCAGCATTTCCTGATAAAATTTCTC TGAGCATTGCAGCCCTTGAAAGTGAACCTGGCCTTTTTCTATCAAATAAAGAGAGAGTATTTCTGGAAGCTGAGATGATG GCAAAGAAATACAAGCAAAAGCTACCTCCTGCTATTACCACGAAACGATTAGACCCGCTACCAACTAGTGCACTGCCTTT TGAAAATGAAGCACTTTATGCAAACTGGAAGTGGTTTAAATTTGAAAAATAA
Protein sequence (LotjaGi5g1v0286600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPFILHPCKFLCFQCRMPVKDTSFFSNTFIKKSHTKSPSPAPQKLRSFAVLFNPHSSKKVSILSDTHFTFCSRNGGFDGI SSDLSPEANDDGTQELELLNKPYPVRVAEELASEAEMDQEKPSQQEALAPFLKFFKGSDSMEEVEEDGDVLQVSEEKYVV DGENEEEGEEEEEDKKVGVEYYEPKPGDFVVGVVVSGNEYKLDINVGADLLGTMLTKEVLPLYGKEMENLLFDVEKDTEN FMAQGKIGIVKNDEALSGVPVPGRPVVETGTILFAEVLGRTLSGRPLLSTRRFFRRIAWHRVRQIQQLNEPIEVRITEWN TGGLLTRIEGLRAFLAKAELVKRVNTFTELKENVGRRMYVQITRIDEDKNSLMLSEKKAWEKLFLREGTLLDGTVKKIFP YGAQIKIGVSNRSGLLHISNISRAEITSVSDVLSVDENVKVLVVKSAFPDKISLSIAALESEPGLFLSNKERVFLEAEMM AKKYKQKLPPAITTKRLDPLPTSALPFENEALYANWKWFKFEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 523 | 506 | 3.5E-230 | – | |
| PANTHER | 18 | 523 | 506 | 3.5E-230 | – | |
| Gene3D | 299 | 384 | 86 | 5.5E-5 | – | |
| SUPERFAMILY | 299 | 378 | 80 | 2.39E-6 | ||
| SMART | 307 | 377 | 71 | 0.012 | ||
| CDD | 309 | 377 | 69 | 7.68305E-14 | – | |
| ProSiteProfiles | 309 | 377 | 69 | 10.572 | ||
| Gene3D | 385 | 467 | 83 | 9.6E-15 | – | |
| SUPERFAMILY | 385 | 464 | 80 | 2.39E-11 | ||
| Pfam | 386 | 448 | 63 | 2.7E-8 | ||
| SMART | 386 | 457 | 72 | 9.2E-10 | ||
| ProSiteProfiles | 388 | 457 | 70 | 13.609 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0286600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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