Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0286700 |
| Transcript ID | LotjaGi5g1v0286700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A151S8F0|A0A151S8F0_CAJCA F-box/kelch-repeat protein family; Found in the gene: LotjaGi5g1v0286700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60327167..60333555) extracted from Lotus japonicus Gifu genome v1.2.
AAGTCACAAAATATAATTAAGTTGGGAAGAATATATAATTTCTAGCAGGGAGAGAGTGGCGACGTTCGAAACCACCGCCG CCGCCACCATGTCACGGAGGCTGTCACCGCCGGTGATACCAGACGAACTCATCTACGAGATCCTTCTGAAGCTTCCAGTG GAATCCCTTTGGCGACTCAGGCGCGTATGCAAAACATGGAAAACCCTAATTTCCCACCCCCAATTTGCTAAAGATCACTT TCACACCTCAATCTCAGGTACAATCATGAACCAACCTCGATTGGCCTTAGTTTACGATGATTCGTGCAAGGTTGTTACAT ATTCTATGAATTTATTCTTCCAAAACCGACCAACCCTTACTAAAAAACTCACCTTTAAGATGGAAGGAAAGCACAACTAT TTTGTAGGTTCAATCAATGGATTACTGTGTTTGTGTGATGTTAATGGTTGTTTTAGATTGTACAACCCTTCTACCAAATT GGTTTCCAGCAAATCCCCTGCTTTTCCTAATAAATACTGGATCCCTTATACTTCATTTTTTGGCTATGATAAAGTGAATG ACAAGTACAAGGTGCTAGCATTTGGCGTTGGTTCGGGTTTTTCTAAATTCGTGCCTACACTTTATACCTTTGGTGAAAGG GAAAGTAATTGGAGGACAATGATTCAGGATCTCCCGTTTACCAGTTGTATCAGGGGCTTGCGTCAGACATTTGTGAATGG TAATCTGCATTGGCTGATTAAAAGTGGTCATGATTCTGATAAATTGGTGATTATTTCTTTTGACGTGGAAAAAGAGACTC ATGGTGAAGTGTTGCTACCTCCTGAGCTAGAGGGTGGATTTTGGAGTCTTCACCTGTTTGTCTCCAATAAGCATCTTTAT GTGGGGCACCGTTCTTACAACACTTGTTTTGTTCTTTGGTTGATGAAAGACTATGGAGTTCAGGAGTCTTGGACTAAAGT AATGACGATCCCTCTCAACTCTGAATACTGTATTTGTAGATGCAATGCTACTCATCATCTTCGTCCCTTGTGCATTTTCG AAAATGGTGTTGTTGTTCTTAGAACTACATGTTCCAATTCCTATTTAGCTACGTATGACTCAAATAATGGCAAATTCAAA CGTCATTATTGTGGGAATACGCGAAATCAAAGTAAGTGGTGTGGAGGGATTTATCATGAGAGTCTAGTTTCACCACCATG ATCTGTTGCATTTGTGGAGTCTTCCCGAGCTTTGCATATAGCTTATTGTGCGTCATAATTTTTAAGCTTATAACTTAATT ATCATAGAATACATGGTGTTAGTTGTTTTGGTGAAGCCTCTTTATTGGATTTTTTTTTGCTTATATCTCTTTGTTTTGAA TTATTGATGGTTGGATCGATACTTGGATTTACCTTATATTTTGTAGTGATCTTTGAATTCTATTCTAATTAGAAAGATTA TTGTTGAGTATTATTCAGGCCATCATGTGCAAAGCTGTAATAGATGCTTAATGTGTGCTTGAACAGAGTTCATCAGCCAG GTGTTGCCATACTGGAACATTTTCTGCAATTGTTTAACTTGTATGTATAACAAAGAAGAATTTAGAAGATATTCAAAATA AAAAAACTAACAAATGGATACATATATAGCAGACCATCTCTTTGAATTGTTGGATAAAAAAAGCTTCTTGTATTTATCAT GTTTTTGCTCTTGAACTTCTAAAACTCGAACTTACTCACGTACACCAACCTTTTTTCTCCTAGTCCAATCCAAACTTTTT TTAAGAGACCAAAACAAACTTTATTCAAGATAAGAAATAGATAATATGACAACCCCTCAAAATATTGTTATATATCATCT CTTGAATTGATTAAAGTGTAAATTTCATGATTAACTTATATTTTCAAGAGCCAAAAAGGCTGAAAGTACATGTACCAATT GAAAGGCATATAGTTTATCTGCATTTTGGTTTATTCAACAATTACGTTTTCTTTCACGTTCAAAAAAAAAATTACGTTTT CTTTCTGTACTTTAGCCCTGTTTGGAAGAGATTATTTGAGTTTATCTAATAGCATAAGTGCTTATGACAGTGTTTGAGAG AGCTTATGCAAACAGCTTATGGCCTACCATAAGCTGTTTTGAGCTTATTTTCATAAACTATTCAGGATAGCTTATGAAAA AGAGCTTATGCTTATATATCTTATTTTCAATTTATTTCAATAACATTTTAAAAATAACTTAAGCGCTTACGTAAGCGCTT ATGCCATAAGTGCTTAATTAAGTTCTTTTTCTAAACGAGATCTTTATTGGATGTTCAAGTAAGCAGTACACACGTTAAAA AGAAAAGTAAGCAGTACACAACGTTGATTTTGTTTTATCCTCTCTCTGCCTTTTTTCTCCTTGATATTTTTACCTTTTCT ACTTCAACTTTTAAAGCTAAATAAATTTTCATTTAGGAAAAAGATAAATTCTTTAGGCTATTTAGAATTTTGGGAATAAG TCCCCGTAGGATAACTTAAGTGGTAGGAGCTGGGAACATATGGGTTGGGTAGGGGGAGATCCAGGGTTCAATTCCTGACG GGTGCAATTTATCTTTCCAATGTACCAATTTTTTTTTTTGGGAATAATTATTCCCACCATCCCCATGTCTATTCCCACCA ATCATCTTTCAAAAAATACCCTCACACGGTCACACCGCAAATTTGCAGAATGTATTTTCTTTATTTATATCCTGCAATTA AAAATGCAATATTGGTAAGAGGGAAACGAGAGAGGGAAGGCTTCACAATTAGGGAGAAGAAAAGGCATCATGCAGTGGAG AGGTTGGTACACCCTTGAAACTCCAGTGGCATCGACGGTCACGTTGATCGCAAAAGCCTCATTGATGGGTTGCAAAGCAT AGATTTGAGGAGAATGAACCATATTTGAGAATAAGGTGGGTTTCAGACCTTTCAATGGTTCCTTATAGTGAAAAAGGGTT GATTCAGTTCAACTGGAGCTCATATCACTTCTATTTTTCATTTTTGACACTCTTGTTGTATGTCTCTTTTACTTCTTTCT CACTTTGTTGTTGTATTCTTACAACCATGGGGTCTATAAGAAATAGAGGAAAAGAAAAATGAAAAATGGAGGGAGACAGA ACCACCCTCTAAGGGTTCAGGCATGAAGAAGGAGACGACGAAATACATAAGAGAGAAGAGTCATTGGGATCTTAAGCTGC ATGTCTTCGCTAATTGTCCGTATACGTGTCTAACGAATATTTTTTGGATCTATGGTTGATGAAAATATGTGAAGTTTAGA AGTATTGGACTAAATTCATGATGATCCTCTAAAAAAATTTCCATTATTTTATGTGTTTTTAGATTCTACTCCCTTGTACA TTTTGGAGAATGGTGTTGTTCTTATGCAAACTACATATTCTCATTCCCATTTAGTTATGTATGACTCTAATAATTACACA TTTGGTGAGTGTAGAATTACACATAAATCACAGGGTCATGAGATGGTTTATCGTGAGAGTCTAGTTTCACAATTATGATA TGTTTTATTTGTGGAATCTTCTCTACTTTGCAAATATCATGACTTCTTAAACTGTTTGTCACAACTCTTGAGTTTAATTA TAACTTGATTACCTCAATATAGAATACGAGGTGTGAGTTATTTAGGTGAAGCCTCATCTTTGCTTATATTTCTTTGTTGG CTTAATATCACTTTTGGTCCCCCACTTATCATGATTTGGCAGTTCTGGTCACTCATGAATTTTTTTAGCCTATAACGTCC CTCATGTTTACTAATTGTTGCAGTTTTTGTTTTCCGTCAACTTCCATCCAATATTTAACGAGTTTTAATTAAAAATTTAA CTAAACAAAGTTGAATTACTAGGAAGCACAAGGGGTAGGTGTACCACAACATCTAGTTATGATTTATATATTTTATTATT TTTTAAAAAATATTTATTTACTACTTTTTAAAAGAATGAAGTAAGATTATTTATGGGCTGTGGGAGGCATGCAACAAGCT GCTGTTTGAGCAGAAACATCCTACCTTTGCAACGGTTCTTGATTGAGTGGCTTCCTTAGTCGTGCCGCCGGCGACAGCTC GCGGTTCGGGTGGTGGGAGACCTGCGACGGAGAGCTGGAAGCGTCTAGCACCAGGTATCATTAAAATTAATGTGGATTCT TCTCTGGGTGGTGATTGCTTTGCTGGTTTTGGGATGGTAGCTCTCGACGAGGAGGGTGAGGTTCTAGCGGCAGCGTCCCT CTATCCGACGGTGGCTTCCTCTTCGACCATGGCTGAGTCTCTCTCTCTCCGTTGGGCTTTGGAGATTTCTTCCCAGTTGG GTTTCAGGCGAGTGTAGATTGAGAATGATTGCTTGCAGTTATATCAGGCTTGGAAAAAGGGCGCCGGTCGTTTCCTTTTA TTTTCAATAATCCAAGATTGTTGTTTTGGTCTTTTGCGTTTGTGTTGACAGTTTTGCTTTTACTTTTGTCCGTAGACTAG GAAATACTTGTGCTGATTTTATGGCTCGGAACGCCTCAACCCTTTCAAATGTTATTTGGATTGAGAAGGGTTCCCCGGGT TTGTTTAGCCTGCTACAGGCGGGTCTTTTGACTTCTATGCCGGTTTCGATTTAATCAATATTATGCTACGTTCAAATTTT TTTTTGTAAGATTCTTAATTTGAAAAAAAAAGGTAAGATTCTTTCATTTTAAGAAAAATATCGAAATAAACAAAATAATT CAATCCAAATCTTCAAGTGGATATAGGATTGATTTTTTTTTTTGACTGTCGATATAGGATTGAATTTAAATTCAAATTAA ATGGATCCGGTAGCTAATTAATAAGATAGAGAATTTAAAAGAATTCAAAGAAAGAGTTTGACAATTAAATTTGATACCTC AAATATAAATAATAAATCACACAATATTGTTTTTTTTATGTCACAAAATATTATTAAGTTGTGAAGAATATATAATTTCT AGCAGGGAGAGAGTGGCGACGTTCAAAACCACCACCGCTGCCGCTGCCGCCATGTCACGGAGGCTGTCACTGCCGGTGAT ACCAGAGGAACTCATCTACGAGATCCTTCTGAAGCTTCCGGTGGAATCCCTTTGGCGATTCAGGCGCGTATGCAAATCAT GGAAAACCCTAATTTCCCATCCTCAATTTGCGAAAGATCACCTTGACTCCTCAATCTCAGGTGCAATCATGACCCAGCCT CGATTGGCCTTAGTTTACGATGATTCGAACACGGCCACAACATATTCTGTGAATTCACTCTTCAAAAACCCACCAACCCT TACTGAAAAACTTAAATTTAAGATGGAAGGAAAGCACAACCATTTTGTAGGTTCAATCAATGGATTACTGTGTTTGCGTG ATGTTAATTGTTGTTTTAGATTGTACAACCCTTCTACCAAATTGGTTTCCAGGAAATCCCCTGCTTTTCCTATAGAGATT AAATACTTGTTCCCTAATAATGCATTTTTTGGCTATGATAAAGTGAATGACAAGTACAAGGTGCTAGCATTTGGGGTTGA CCTTGGTTATCATGTTTTTAACCTCGTGGCCAGACTTTATACCTTTGGTGAAAGTGAAAGTAATTGGAGGACAACGATTC AGGATCTCTCGTTTGGTGTCAATAATATTGAGGGCTCGCGTCAGACATTTGTGAATGGTAATTTGCATTGGCTGACTAAG AGAGGTCATGGTTCTGATAAAACAGTGATTATTTCCTTTGACGTGGATAGGGAGACTCATGGTGAAGTGTTGCTACCTCT TGAGCTGGAGGATATAATTTGGAGTCTTGACCTGCATGTCTCCAATAAGTTTCTTTATGTGTCGCAATATTCTCACAAAA CTTGTTTAGTTCTTTGGTTGATGAAAGAGTATGGAGTTCAGGAGTCTTGGACTAAAGTGATGACGATCTCTCTCGAGTCT AGATATTGTAGATGCAATGCTACTCATCTTAGTCCCTTGTGCATTTTGGGAAATGATGTTGTTGTTCTTAGAAATGCATG TTCTTGTCCTTATTTAGTTACGTATGACTCAAAAAATGGCCAATTTGGACGTCGTTTTAGGATAGAGCGAAGTTCACCAC GTCAATGGCATGGAGGGGTTTATCATGAGAGTCTAGTTCCGCCACCATGATATGTTTCATTTTTATGGAGTCTTCCAAGC TTAGCTTATATGACTTCTTGTGAGTCAGAAGCTTGAAACTTGATTATCATAGAATGAAGGGTGTAAGTTGTTTTGGTGAA GCCTCATCTTTGTATTACTGATGGTTGGATTCACCTTATATTTGTAGTGATGTTTGGATTCTATTCTAATTTGAAAGAGT GTTGTTGAGTATTATTGAGACCATCATGTGCGAAGCTGTAATAGATGCTTAATGTGTGCTTGAACAGAA
CDS sequence (LotjaGi5g1v0286700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACGGAGGCTGTCACCGCCGGTGATACCAGACGAACTCATCTACGAGATCCTTCTGAAGCTTCCAGTGGAATCCCT TTGGCGACTCAGGCGCGTATGCAAAACATGGAAAACCCTAATTTCCCACCCCCAATTTGCTAAAGATCACTTTCACACCT CAATCTCAGGTACAATCATGAACCAACCTCGATTGGCCTTAGTTTACGATGATTCGTGCAAGGTTGTTACATATTCTATG AATTTATTCTTCCAAAACCGACCAACCCTTACTAAAAAACTCACCTTTAAGATGGAAGGAAAGCACAACTATTTTGTAGG TTCAATCAATGGATTACTGTGTTTGCGTGATGTTAATTGTTGTTTTAGATTGTACAACCCTTCTACCAAATTGGTTTCCA GGAAATCCCCTGCTTTTCCTATAGAGATTAAATACTTGTTCCCTAATAATGCATTTTTTGGCTATGATAAAGTGAATGAC AAGTACAAGGTGCTAGCATTTGGGGTTGACCTTGGTTATCATGTTTTTAACCTCGTGGCCAGACTTTATACCTTTGGTGA AAGTGAAAGTAATTGGAGGACAACGATTCAGGATCTCTCGTTTGGTGTCAATAATATTGAGGGCTCGCGTCAGACATTTG TGAATGGTAATTTGCATTGGCTGACTAAGAGAGGTCATGGTTCTGATAAAACAGTGATTATTTCCTTTGACGTGGATAGG GAGACTCATGGTGAAGTGTTGCTACCTCTTGAGCTGGAGGATATAATTTGGAGTCTTGACCTGCATGTCTCCAATAAGTT TCTTTATGTGTCGCAATATTCTCACAAAACTTGTTTAGTTCTTTGGTTGATGAAAGAGTATGGAGTTCAGGAGTCTTGGA CTAAAGTGATGACGATCTCTCTCGAGTCTAGATATTGTAGATGCAATGCTACTCATCTTAGTCCCTTGTGCATTTTGGGA AATGATGTTGTTGTTCTTAGAAATGCATGTTCTTGTCCTTATTTAGTTACGTATGACTCAAAAAATGGCCAATTTGGACG TCGTTTTAGGATAGAGCGAAGTTCACCACGTCAATGGCATGGAGGGGTTTATCATGAGAGTCTAGTTCCGCCACCATGA
Protein sequence (LotjaGi5g1v0286700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSRRLSPPVIPDELIYEILLKLPVESLWRLRRVCKTWKTLISHPQFAKDHFHTSISGTIMNQPRLALVYDDSCKVVTYSM NLFFQNRPTLTKKLTFKMEGKHNYFVGSINGLLCLRDVNCCFRLYNPSTKLVSRKSPAFPIEIKYLFPNNAFFGYDKVND KYKVLAFGVDLGYHVFNLVARLYTFGESESNWRTTIQDLSFGVNNIEGSRQTFVNGNLHWLTKRGHGSDKTVIISFDVDR ETHGEVLLPLELEDIIWSLDLHVSNKFLYVSQYSHKTCLVLWLMKEYGVQESWTKVMTISLESRYCRCNATHLSPLCILG NDVVVLRNACSCPYLVTYDSKNGQFGRRFRIERSSPRQWHGGVYHESLVPPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 4 | 50 | 47 | 10.69 | ||
| PANTHER | 6 | 317 | 312 | 8.2E-41 | – | |
| PANTHER | 6 | 317 | 312 | 8.2E-41 | – | |
| Gene3D | 6 | 97 | 92 | 8.5E-9 | – | |
| SUPERFAMILY | 9 | 62 | 54 | 9.29E-14 | ||
| SMART | 10 | 50 | 41 | 2.3E-7 | ||
| Pfam | 10 | 46 | 37 | 1.9E-8 | ||
| TIGRFAM | 108 | 340 | 233 | 8.3E-26 | ||
| Pfam | 213 | 309 | 97 | 9.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0286700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…