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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0292300 |
Transcript ID | LotjaGi5g1v0292300.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histidine decarboxylase; TAIR: AT1G43710.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q6ESZ9|SDC1_ORYSJ Serine decarboxylase 1; TrEMBL-Plants: tr|G7ID03|G7ID03_MEDTR Serine decarboxylase; Found in the gene: LotjaGi5g1v0292300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60935647..60939134) extracted from Lotus japonicus Gifu genome v1.2.
CTGAATTGCCTGTTGTAAGAAACATTGAGGACTGACTTGGCCATCAGAGCACTTAACGTGCCAACTCATCATCTCTGTTA ACGTTTATTAACGGTAGCTGAGGTAGGGACCAACGTGACCGACGTTTTCAAACTTCAGGGACGACGGGAGCCATTTTGGA AGAATAGGGACGAATTTGCCCGACTGGTGTAACTTTAGGGACCAAAGTGACTATTCTCCCAATTGAATGGGGTTTAGCCT ATCGGCAATTAGAAAGAATTTTTTTGTCCTTTTGTTTCATGTTTCACAATAGCAAGTATGAAGAAGAATGAAAGATGATG TTTTGACAGAATTAAAATAGGTATTAGGAGAACTGGGATTTTTAATGTTTTACTTAATAAGTTTAATTTTAATTAATTAA TTTGGGGTAATTTGGGTTTTTTTAATTTTTTAAATTTTATGATGTGTAATTTATTTTTCATTTTTTTTGTTTAAAAATCC CCATAAGCATTTTGATCACAGTCAGCATGTCATTTAAGCATTTATCGGAGCTCCGACCTCCGGCGATGATCCGCTCCAAA AATATTTCAAACATGAGGACCATTTACAATAAGTTTTCCGGCAAGGGACCTAGATCAAACGGCGACACAAAGACAGAGAC TAATATGATGTTCCTAATAATATATCTTAATTTAATAAACACGTGACCCTAAATCCCTAAAACTTCGAGGGACCACACTT AATGAATTATTAAACGTGCCACCACCACCTAACAACATTAAATTACTACACTCAGCCAACTACTGCTTCCAGCAACAATT GCATCACCTCGTGTCTTCATGATCACCAAGACACATTCTGGCACCACAAATCGATTGTTTTCTATGAGTGGACAATTATT TCACAAAAGTAGTATTTATGAAGAAAAAAATAACTGCAATTTTACTTACATTCGATCTTAATTCTTTGAACACACGTGGC CGATATCAGCAACAAAAAATCTGAATATAAATTAGAGAGGCATGGAAACAAGTTTAACACAGTGAAGTTTAATCTGAATA TAAATCTGAAACGTGAAAGTAAAGTTACCTGCGGGTAAGCATTCAATTCTTCCCTTTCAGCTTCTTTTTTGGTGTTAGAT TCACTTTCAATTATTGCTTCCCACTCTTTTATAGTGTCACTCTGATCTCAAACACAATAGACAGAATGGAGAATACAACA GAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGTGGTCAGCAATGCTAA GCCCTTTGGAGAAGAAGAGAAGCGTAAAGAAATTCCAGAGAATAATGGGCATATGATGAGCCTTCCCATCAACAGCACTG GAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAATTGCGCTTTTTAGGT AAGCATTTGATATTATAACTTTATCTAATGATGATTCATGCAAAAATCAAGAGTTAGAAAGAAAAATAATGAATGTCATA AATGATGAAAGAGATAGAAAAAAATTAAGATGTTAACAAGTATCTAACTGTTTAGACATTAAAATTTCATTTTTTATAAT CGCACTATATATATATATATATATAGTTGCAACACCTTGGCTAATTATCATATTTACTAAAGCAGGTTATTCCACTAATC AAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAATGCTGGCGACCCATTTATAGGGAGTAGT TATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCAATCTGTGGGAGATAGAGAAAGAGGAGTA TTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTATCTGGGTAAGTTTTGTGAACTTCATTTT CAGAGGCTTATGGTGTATTACAAAACTTTCATCCTAACTATAACCTTGATTTGTGTTTATTGTACACAGGAGGGAACAAT TCCCAAATGGAATTTTGTACACATCGCAAGACTCGCATTATTCAATATTCAAGACTGCAAAAATGTATAGAATGCAATGC ATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCTTGCTCATAAGAACAGGCC AGCCATCATCAATCTAAATATAGGTATCTCATCTTTCATAATTGGCTCATGTGCACACCATTAACAAGCTTAAGCACACA CACCCACATTATAACTACAAAATAGAGTATAGACTCATGACTAAACTTAAATCATTCATTAATTGTTTTGTGTACTTCAA CTATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTAATACAAACACTTGAGGAAAGTGGCTTCTCTC GCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTTGCCATTTCTTAAACAAGTTAGTGAAAGTTAT TAACCACAATTTTAAGTTTAACAAAAGTATTGCTTTGATGATGGTTCAAAAGCAAAGAACAATGAAATGTACCAAATTTT TTGAAGAATGATGATGATGAAAATGCTACAAATAGATACCAATGGCAAATATCTGACTTTTTTTACTACATACACGTCTC TTTGCTCAAGAAAACTTATTTTAATATATTGTCTGCATGTTTGCGTAGGCTCCAAAGGTTACCTTCAAGAAGCCCATTGG AAGTATATCCACTTCTGGCCATAAGTTTTTAGGATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTCA ATGCTCTTTGTAGAGATGTTGAATACATTAAATCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTATT TTCCTCTGGTATGCACTCCAAGAAAAAGGTTTAATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAACCA CTTACTCGATAAACTACATGAAAATGGAATTGGTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCCTC TAAATGACGACTTTGTGCAAAGGTGGAGTTTGTCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCACT ATTGAAATGCTAGACTCCTTTGTTAGTGAACTTGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTCC ATGCATCTCAAATGCCATTGGTAGAGAAAATTGTGCCTGTGCATTGCATAAATCGTTGTAAAAGAGGGAGGAATGCATTT GATGATAAAAATGTAATCCATGATATTATAATTGATAAAATTGATGTACTCATCAATCATTAGAAACTTTTATTTTATGA AGAATCATAAATAAAATGGTTTTAACCATAAGTTGCACTCGTATATTTTGCTCGTTGTATTGATGAATATTCATACATCA AATAGTAAATTTTCCATAATAACAATGCATTATTGGTGCTACTTTTGG
CDS sequence (LotjaGi5g1v0292300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATACAACAGAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGT GGTCAGCAATGCTAAGCCCTTTGGAGAAGAAGAGAAGCGTAAAGAAATTCCAGAGAATAATGGGCATATGATGAGCCTTC CCATCAACAGCACTGGAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAA TTGCGCTTTTTAGGTTATTCCACTAATCAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAA TGCTGGCGACCCATTTATAGGGAGTAGTTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCA ATCTGTGGGAGATAGAGAAAGAGGAGTATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTA TCTGGGAGGGAACAATTCCCAAATGGAATTTTGTACACATCGCAAGACTCGCATTATTCAATATTCAAGACTGCAAAAAT GTATAGAATGCAATGCATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCTTG CTCATAAGAACAGGCCAGCCATCATCAATCTAAATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTA ATACAAACACTTGAGGAAAGTGGCTTCTCTCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTT GCCATTTCTTAAACAAGCTCCAAAGGTTACCTTCAAGAAGCCCATTGGAAGTATATCCACTTCTGGCCATAAGTTTTTAG GATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTCAATGCTCTTTGTAGAGATGTTGAATACATTAAA TCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTATTTTCCTCTGGTATGCACTCCAAGAAAAAGGTTT AATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAACCACTTACTCGATAAACTACATGAAAATGGAATTG GTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCCTCTAAATGACGACTTTGTGCAAAGGTGGAGTTTG TCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCACTATTGAAATGCTAGACTCCTTTGTTAGTGAACT TGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTCCATGCATCTCAAATGCCATTGGTAGAGAAAATT GTGCCTGTGCATTGCATAAATCGTTGTAA
Protein sequence (LotjaGi5g1v0292300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENTTEKNVTISLNIPQVRDSNESPRVVSNAKPFGEEEKRKEIPENNGHMMSLPINSTGETQANLAQVIAHYVGTLNKKQ LRFLGYSTNQEFDYDALAPLLHFHINNAGDPFIGSSYSLNSVEFEVPVLDWFANLWEIEKEEYWGYVTTGGTEGNLYGIL SGREQFPNGILYTSQDSHYSIFKTAKMYRMQCIKVGTLISGEINYVDLKALLLAHKNRPAIINLNIGTTMKGAIDDIDHV IQTLEESGFSRDQFYIHCDGALSGIMLPFLKQAPKVTFKKPIGSISTSGHKFLGCPIPCGVVITRLEHVNALCRDVEYIK SRDVTITGSRCGLTPIFLWYALQEKGLIGLKKEAQKCITNANHLLDKLHENGIGAMQNKFSNTVVFERPLNDDFVQRWSL SCEGNIAHVVVMQHVTIEMLDSFVSELVKKRSIWFQGGLIKPPCISNAIGRENCACALHKSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 20 | 42 | 23 | - | – | |
PANTHER | 22 | 460 | 439 | 4.7E-229 | – | |
PANTHER | 22 | 460 | 439 | 4.7E-229 | – | |
SUPERFAMILY | 73 | 429 | 357 | 4.16E-73 | ||
Pfam | 97 | 373 | 277 | 2.7E-23 | ||
Gene3D | 103 | 344 | 242 | 7.7E-52 | ||
ProSitePatterns | 284 | 305 | 22 | - | ||
Gene3D | 345 | 432 | 88 | 3.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi5g1v0292300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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