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LotjaGi5g1v0292300.2

Overview

Field Value
Gene ID LotjaGi5g1v0292300
Transcript ID LotjaGi5g1v0292300.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histidine decarboxylase; TAIR: AT1G43710.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q6ESZ9|SDC1_ORYSJ Serine decarboxylase 1; TrEMBL-Plants: tr|G7ID03|G7ID03_MEDTR Serine decarboxylase; Found in the gene: LotjaGi5g1v0292300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:60935724..60938205) extracted from Lotus japonicus Gifu genome v1.2.

ATTCGATCTTAATTCTTTGAACACACGTGGCCGATATCAGCAACAAAAAATCTGAATATAAATTAGAGAGGCATGGAAAC AAGTTTAACACAGTGAAGTTTAATCTGAATATAAATCTGAAACGTGAAAGTAAAGTTACCTGCGGGTAAGCATTCAATTC TTCCCTTTCAGCTTCTTTTTTGGTGTTAGATTCACTTTCAATTATTGCTTCCCACTCTTTTATAGTGTCACTCTGATCTC AAACACAATAGACAGAATGGAGAATACAACAGAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTA ATGAGTCTCCTAGGGTGGTCAGCAATGCTAAGCCCTTTGGAGAAGAAGAGAAGCGTAAAGAAATTCCAGAGAATAATGGG CATATGATGAGCCTTCCCATCAACAGCACTGGAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGAC CCTAAATAAAAAACAATTGCGCTTTTTAGGTAAGCATTTGATATTATAACTTTATCTAATGATGATTCATGCAAAAATCA AGAGTTAGAAAGAAAAATAATGAATGTCATAAATGATGAAAGAGATAGAAAAAAATTAAGATGTTAACAAGTATCTAACT GTTTAGACATTAAAATTTCATTTTTTATAATCGCACTATATATATATATATATATAGTTGCAACACCTTGGCTAATTATC ATATTTACTAAAGCAGGTTATTCCACTAATCAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAA CAATGCTGGCGACCCATTTATAGGGAGTAGTTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTG CCAATCTGTGGGAGATAGAGAAAGAGGAGTATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATA TTATCTGGGTAAGTTTTGTGAACTTCATTTTCAGAGGCTTATGGTGTATTACAAAACTTTCATCCTAACTATAACCTTGA TTTGTGTTTATTGTACACAGGAGGGAACAATTCCCAAATGGAATTTTGTACACATCGCAAGACTCGCATTATTCAATATT CAAGACTGCAAAAATGTATAGAATGCAATGCATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAA AAGCTTTACTTCTTGCTCATAAGAACAGGCCAGCCATCATCAATCTAAATATAGGTATCTCATCTTTCATAATTGGCTCA TGTGCACACCATTAACAAGCTTAAGCACACACACCCACATTATAACTACAAAATAGAGTATAGACTCATGACTAAACTTA AATCATTCATTAATTGTTTTGTGTACTTCAACTATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTA ATACAAACACTTGAGGAAAGTGGCTTCTCTCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTT GCCATTTCTTAAACAAGTTAGTGAAAGTTATTAACCACAATTTTAAGTTTAACAAAAGTATTGCTTTGATGATGGTTCAA AAGCAAAGAACAATGAAATGTACCAAATTTTTTGAAGAATGATGATGATGAAAATGCTACAAATAGATACCAATGGCAAA TATCTGACTTTTTTTACTACATACACGTCTCTTTGCTCAAGAAAACTTATTTTAATATATTGTCTGCATGTTTGCGTAGG CTCCAAAGGTTACCTTCAAGAAGCCCATTGGAAGTATATCCACTTCTGGCCATAAGTTTTTAGGATGCCCAATTCCTTGT GGTGTTGTCATAACACGCCTAGAACATGTCAATGCTCTTTGTAGAGATGTTGAATACATTAAATCAAGGGATGTCACAAT CACGGGTAGCCGTTGTGGGCTTACCCCTATTTTCCTCTGGTATGCACTCCAAGAAAAAGGTTTAATAGGACTTAAGAAAG AAGCACAAAAGTGCATCACAAATGCAAACCACTTACTCGATAAACTACATGAAAATGGAATTGGTGCAATGCAAAACAAG TTCAGTAATACCGTTGTATTTGAAAGGCCTCTAAATGACGACTTTGTGCAAAGGTGGAGTTTGTCTTGTGAAGGAAATAT TGCACATGTGGTTGTGATGCAGCATGTCACTATTGAAATGCTAGACTCCTTTGTTAGTGAACTTGTTAAAAAACGATCTA TTTGGTTTCAAGGTGGACTGATAAAGCCTCCATGCATCTCAAATGCCATTGGTAGAGAAAATTGTGCCTGTGCATTGCAT AAATCGTTGTAAAAGAGGGAGGAATGCATTTGATGATAAAAATGTAATCCATGATATTATAATTGATAAAATTGATGTAC TCATCAATCATTAGAAACTTTTATTTTATGAAGAATCATAAATAAAATGGTTTTAACCATAAGTTGCACTCGTATATTTT GC
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0292300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAATACAACAGAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGT GGTCAGCAATGCTAAGCCCTTTGGAGAAGAAGAGAAGCGTAAAGAAATTCCAGAGAATAATGGGCATATGATGAGCCTTC CCATCAACAGCACTGGAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAA TTGCGCTTTTTAGGTTATTCCACTAATCAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAA TGCTGGCGACCCATTTATAGGGAGTAGTTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCA ATCTGTGGGAGATAGAGAAAGAGGAGTATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTA TCTGGGAGGGAACAATTCCCAAATGGAATTTTGTACACATCGCAAGACTCGCATTATTCAATATTCAAGACTGCAAAAAT GTATAGAATGCAATGCATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCTTG CTCATAAGAACAGGCCAGCCATCATCAATCTAAATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTA ATACAAACACTTGAGGAAAGTGGCTTCTCTCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTT GCCATTTCTTAAACAAGCTCCAAAGGTTACCTTCAAGAAGCCCATTGGAAGTATATCCACTTCTGGCCATAAGTTTTTAG GATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTCAATGCTCTTTGTAGAGATGTTGAATACATTAAA TCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTATTTTCCTCTGGTATGCACTCCAAGAAAAAGGTTT AATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAACCACTTACTCGATAAACTACATGAAAATGGAATTG GTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCCTCTAAATGACGACTTTGTGCAAAGGTGGAGTTTG TCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCACTATTGAAATGCTAGACTCCTTTGTTAGTGAACT TGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTCCATGCATCTCAAATGCCATTGGTAGAGAAAATT GTGCCTGTGCATTGCATAAATCGTTGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0292300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MENTTEKNVTISLNIPQVRDSNESPRVVSNAKPFGEEEKRKEIPENNGHMMSLPINSTGETQANLAQVIAHYVGTLNKKQ LRFLGYSTNQEFDYDALAPLLHFHINNAGDPFIGSSYSLNSVEFEVPVLDWFANLWEIEKEEYWGYVTTGGTEGNLYGIL SGREQFPNGILYTSQDSHYSIFKTAKMYRMQCIKVGTLISGEINYVDLKALLLAHKNRPAIINLNIGTTMKGAIDDIDHV IQTLEESGFSRDQFYIHCDGALSGIMLPFLKQAPKVTFKKPIGSISTSGHKFLGCPIPCGVVITRLEHVNALCRDVEYIK SRDVTITGSRCGLTPIFLWYALQEKGLIGLKKEAQKCITNANHLLDKLHENGIGAMQNKFSNTVVFERPLNDDFVQRWSL SCEGNIAHVVVMQHVTIEMLDSFVSELVKKRSIWFQGGLIKPPCISNAIGRENCACALHKSL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
20 42 23 - –
PANTHER
PTHR46101
22 460 439 4.7E-229 –
PANTHER
PTHR46101:SF6
22 460 439 4.7E-229 –
SUPERFAMILY
SSF53383
73 429 357 4.16E-73
IPR015424
Pfam
PF00282
97 373 277 2.7E-23
IPR002129
Gene3D
G3DSA:3.40.640.10
103 344 242 7.7E-52
IPR015421
ProSitePatterns
PS00392
284 305 22 -
IPR021115
Gene3D
G3DSA:3.90.1150.10
345 432 88 3.7E-5
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0292300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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