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LotjaGi5g1v0292300.3

Overview

Field Value
Gene ID LotjaGi5g1v0292300
Transcript ID LotjaGi5g1v0292300.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Histidine decarboxylase; TAIR: AT1G43710.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q6ESZ9|SDC1_ORYSJ Serine decarboxylase 1; TrEMBL-Plants: tr|A0A151S6Z1|A0A151S6Z1_CAJCA Histidine decarboxylase; Found in the gene: LotjaGi5g1v0292300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:60935755..60938096) extracted from Lotus japonicus Gifu genome v1.2.

TATAAATCTGAAACGTGAAAGTAAAGTTACCTGCGGGTAAGCATTCAATTCTTCCCTTTCAGCTTCTTTTTTGGTGTTAG ATTCACTTTCAATTATTGCTTCCCACTCTTTTATAGTGTCACTCTGATCTCAAACACAATAGACAGAATGGAGAATACAA CAGAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGTGGTCAGCAATGCT AAGCCCTTTGGAGAAGAAGAGAAGCGTAAAGAAATTCCAGAGAATAATGGGCATATGATGAGCCTTCCCATCAACAGCAC TGGAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAATTGCGCTTTTTAG GTAAGCATTTGATATTATAACTTTATCTAATGATGATTCATGCAAAAATCAAGAGTTAGAAAGAAAAATAATGAATGTCA TAAATGATGAAAGAGATAGAAAAAAATTAAGATGTTAACAAGTATCTAACTGTTTAGACATTAAAATTTCATTTTTTATA ATCGCACTATATATATATATATATATAGTTGCAACACCTTGGCTAATTATCATATTTACTAAAGCAGGTTATTCCACTAA TCAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAATGCTGGCGACCCATTTATAGGGAGTA GTTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCAATCTGTGGGAGATAGAGAAAGAGGAG TATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTATCTGGGTAAGTTTTGTGAACTTCATT TTCAGAGGCTTATGGTGTATTACAAAACTTTCATCCTAACTATAACCTTGATTTGTGTTTATTGTACACAGGAGGGAACA ATTCCCAAATGGAATTTTGTACACATCGCAAGACTCGCATTATTCAATATTCAAGACTGCAAAAATGTATAGAATGCAAT GCATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCTTGCTCATAAGAACAGG CCAGCCATCATCAATCTAAATATAGGTATCTCATCTTTCATAATTGGCTCATGTGCACACCATTAACAAGCTTAAGCACA CACACCCACATTATAACTACAAAATAGAGTATAGACTCATGACTAAACTTAAATCATTCATTAATTGTTTTGTGTACTTC AACTATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTAATACAAACACTTGAGGAAAGTGGCTTCTC TCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTTGCCATTTCTTAAACAAGTTAGTGAAAGTT ATTAACCACAATTTTAAGTTTAACAAAAGTATTGCTTTGATGATGGTTCAAAAGCAAAGAACAATGAAATGTACCAAATT TTTTGAAGAATGATGATGATGAAAATGCTACAAATAGATACCAATGGCAAATATCTGACTTTTTTTACTACATACACGTC TCTTTGCTCAAGAAAACTTATTTTAATATATTGTCTGCATGTTTGCGTAGGCTCCAAAGGTTACCTTCAAGAAGCCCATT GGAAGTATATCCACTTCTGGCCATAAGTTTTTAGGATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGT CAATGCTCTTTGTAGAGATGTTGAATACATTAAATCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTA TTTTCCTCTGGTATGCACTCCAAGAAAAAGGTTTAATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAAC CACTTACTCGATAAACTACATGAAAATGGAATTGGTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCC TCTAAATGACGACTTTGTGCAAAGGTGGAGTTTGTCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCA CTATTGAAATGCTAGACTCCTTTGTTAGTGAACTTGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCT CCATGCATCTCAAATGCCATTGGTAGAGAAAATTGTGCCTGTGCATTGCATAAATCGTTGTAAAAGAGGGAGGAATGCAT TTGATGATAAAAATGTAATCCATGATATTATAATTGATAAAATTGATGTACTCATCAATCATTAGAAACTTTTATTTTAT GAAGAATCATAAATAAAATGGT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0292300.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTATAGAATGCAATGCATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCT TGCTCATAAGAACAGGCCAGCCATCATCAATCTAAATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATG TAATACAAACACTTGAGGAAAGTGGCTTCTCTCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATG TTGCCATTTCTTAAACAAGCTCCAAAGGTTACCTTCAAGAAGCCCATTGGAAGTATATCCACTTCTGGCCATAAGTTTTT AGGATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTCAATGCTCTTTGTAGAGATGTTGAATACATTA AATCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTATTTTCCTCTGGTATGCACTCCAAGAAAAAGGT TTAATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAACCACTTACTCGATAAACTACATGAAAATGGAAT TGGTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCCTCTAAATGACGACTTTGTGCAAAGGTGGAGTT TGTCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCACTATTGAAATGCTAGACTCCTTTGTTAGTGAA CTTGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTCCATGCATCTCAAATGCCATTGGTAGAGAAAA TTGTGCCTGTGCATTGCATAAATCGTTGTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0292300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYRMQCIKVGTLISGEINYVDLKALLLAHKNRPAIINLNIGTTMKGAIDDIDHVIQTLEESGFSRDQFYIHCDGALSGIM LPFLKQAPKVTFKKPIGSISTSGHKFLGCPIPCGVVITRLEHVNALCRDVEYIKSRDVTITGSRCGLTPIFLWYALQEKG LIGLKKEAQKCITNANHLLDKLHENGIGAMQNKFSNTVVFERPLNDDFVQRWSLSCEGNIAHVVVMQHVTIEMLDSFVSE LVKKRSIWFQGGLIKPPCISNAIGRENCACALHKSL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46101
1 274 274 1.1E-148 –
PANTHER
PTHR46101:SF6
1 274 274 1.1E-148 –
Gene3D
G3DSA:3.40.640.10
1 158 158 2.5E-30
IPR015421
SUPERFAMILY
SSF53383
2 243 242 3.59E-46
IPR015424
Pfam
PF00282
11 187 177 9.2E-15
IPR002129
ProSitePatterns
PS00392
98 119 22 -
IPR021115
Gene3D
G3DSA:3.90.1150.10
159 246 88 1.5E-5
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0016831
Molecular function Carboxy-lyase activity Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
Subterm of
GO:0019752
Biological process Carboxylic acid metabolic process The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0292300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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