Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0292600 |
| Transcript ID | LotjaGi5g1v0292600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Histidine decarboxylase; TAIR: AT1G43710.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; Swiss-Prot: sp|Q6ESZ9|SDC1_ORYSJ Serine decarboxylase 1; TrEMBL-Plants: tr|G7ID03|G7ID03_MEDTR Serine decarboxylase; Found in the gene: LotjaGi5g1v0292600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:60962661..60965429) extracted from Lotus japonicus Gifu genome v1.2.
TTAGAATTGACTTTCCTATTAACCAACAAACATTTTAAAATATTAAAAAAACACAAAACAATAATCTTTTTAGAATGGAA CGAGTATTTTGAAACAAATTGTTTTCTATGAGTGGACAATTATTTCACAACAGTAGTAGTATTTATGAAGAAAAAAATAA CTGCAATTTTACTTACATTCGATCTTAATTCTTTGAACACACGTGGCCGATATCAGCAACAAAAAATCTGAATATAAATT AGAAAGGCATGGAAACAAGTTTAACACAGTGAAGTGTAGAAATCAAACTAGAACGAGCTAGAGGGAAAGAAAGGCGAAAT CTGAAACGTGAAAGTAAAGATACCTGCGGGTAAGCATTCAATTCTTCCCTTTCAGCTTCTTTTTTGGTGTTAGATTCACT TTCAATTATTGCTTCCCACTCTTTTATAGTGTCACTCTGATCTCAAACACAATAGACAGAATGGAGAATTCAACAGAGAA GAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGTGGTCAGCAATGCTAAGCCCT TTGGAGAAGAAGAGAAGCATAAAGAAATTCCAGAGAATAATGGGCATATGATCTGTCTTCCCATCAACAGCACTGGAGAG ACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAATTGCGCTTTTTAGGTAAGCA TTTGATATTATCACTTTATCTAATGATTCATGCAAAAATCAAGAGTTAGAAAGAAAAATAAAAAAGATAAATAATGAATG TCATAAATGATGAAAGAGATAGAAAAAAATTAAGATGTTAACAAGTGTCTAACTGTTTAGACATTAAAATTTCATTTTTT ATAATCGCACTATATATATATATACAGTTGCAAGACCTTGGCTAATGATCATATTTACTAAAGCAGGTTATTCCACTAAT CAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAATGCTGGCGACCCATTTATAGGGAGTAG TTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCAATCTGTGGGAGATAGAGAAAGAGGAGT ATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTATCTGGGTAAGTTTTGTGAACTTCATTT TCAGAGGCTTATGGTGTATTACAAAACTTTCATCCTAACTATAACCTTGATTTGTGTTTATTGTACACAGGAGGGAACAA TTCCCAAATGGAATTTTGTACACATCACAGGACTCGCATTATTCAATATTCAAGACTGTAAAAATGTATAGAATGCAATG CATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCTTGCTCATAAGAACAGGC CAGCCATCATCAATCTAAATATAGGTATCTCATCTTTCATAATTGGCTCATGTGCACACCATTAACAAGCTTAAGCACAC ACACCCACATTATAACTACAAAATAGAGTATAGACTCATGACTAAACTTAAATCATTCATTAATTGTTTTGTGTACTTCA ACTATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTAATACAAACACTTGAGGAAAGTGGCTTCTCT CGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTTGCCATTTCTTAAACAAGTTAGTGAAAGTTA TTAACCACAATTTTAAGTTTAACAAAAGTATTGCTTTGATGATGGTTCAAAAGCAAAGAACAATGAAATGTACCAAATTT TTTGAAGAATGATGATGATGAAAATGCTACAAATAGATACCAATGGCAAATATCTGACTTTTTTTACTACATACACGTCT CTTTGCTCAAGAAAACTTATTTTAATATATTGTCTGCATGTTTGCGTAGGCTCCAAAGGTTACCTTCAAGAAGCCCATTG GAAGTATATCCACTTCTGGCCATAAGTTTTTAGGATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTC AATGCTCTTTGTAGAGATGTTGAATACATTAAATCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTAT TTTCCTCTGGTATGCACTCCAAGAAAAAGGTTTAATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAACC ACTTACTCGATAAACTACATGAAAATGGAATTGGTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCCT CTAAATGACGACTTTGTGCAAAGGTGGAGTTTGTCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCAC TATTGAAATGCTAGACTCCTTTGTTAGTGAACTTGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTC CATGCATCTCAAATGCCATTGGTAGAGAAAATTGTGCCTGTGCATTGCATAAATCGTTGTAAAAGAGGGAGGAATGCATT TGATGATAAAAATGTAATCCATGATATTATAATTGATAAAATTGATGTACTCATCAATCATTAGAAACTTTTATTTTATG AAGAATCATAAATAAAATGGTTTTAACCATAAGTTGCACTCGTATATTTTGCTCGTTGTATTGATGAATATTCATACATC AAATAGTAAATTTTCCATAATAACAATGCATTATTGGTGCTACTTTTGG
CDS sequence (LotjaGi5g1v0292600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAATTCAACAGAGAAGAACGTGACAATATCTTTAAACATTCCACAAGTTCGTGACAGTAATGAGTCTCCTAGGGT GGTCAGCAATGCTAAGCCCTTTGGAGAAGAAGAGAAGCATAAAGAAATTCCAGAGAATAATGGGCATATGATCTGTCTTC CCATCAACAGCACTGGAGAGACGCAAGCGAATTTGGCTCAAGTAATTGCCCATTATGTTGGGACCCTAAATAAAAAACAA TTGCGCTTTTTAGGTTATTCCACTAATCAAGAATTTGACTATGACGCATTAGCACCATTATTGCATTTTCACATAAACAA TGCTGGCGACCCATTTATAGGGAGTAGTTATAGTCTAAATTCAGTGGAATTTGAAGTACCCGTGCTTGATTGGTTTGCCA ATCTGTGGGAGATAGAGAAAGAGGAGTATTGGGGATACGTCACAACTGGTGGAACAGAGGGAAACCTTTATGGGATATTA TCTGGGAGGGAACAATTCCCAAATGGAATTTTGTACACATCACAGGACTCGCATTATTCAATATTCAAGACTGTAAAAAT GTATAGAATGCAATGCATAAAAGTTGGCACTTTGATCTCTGGTGAAATCAATTATGTTGATCTAAAAGCTTTACTTCTTG CTCATAAGAACAGGCCAGCCATCATCAATCTAAATATAGGAACTACTATGAAAGGAGCAATTGATGACATTGATCATGTA ATACAAACACTTGAGGAAAGTGGCTTCTCTCGCGATCAATTCTATATTCATTGTGATGGAGCTTTATCCGGAATAATGTT GCCATTTCTTAAACAAGCTCCAAAGGTTACCTTCAAGAAGCCCATTGGAAGTATATCCACTTCTGGCCATAAGTTTTTAG GATGCCCAATTCCTTGTGGTGTTGTCATAACACGCCTAGAACATGTCAATGCTCTTTGTAGAGATGTTGAATACATTAAA TCAAGGGATGTCACAATCACGGGTAGCCGTTGTGGGCTTACCCCTATTTTCCTCTGGTATGCACTCCAAGAAAAAGGTTT AATAGGACTTAAGAAAGAAGCACAAAAGTGCATCACAAATGCAAACCACTTACTCGATAAACTACATGAAAATGGAATTG GTGCAATGCAAAACAAGTTCAGTAATACCGTTGTATTTGAAAGGCCTCTAAATGACGACTTTGTGCAAAGGTGGAGTTTG TCTTGTGAAGGAAATATTGCACATGTGGTTGTGATGCAGCATGTCACTATTGAAATGCTAGACTCCTTTGTTAGTGAACT TGTTAAAAAACGATCTATTTGGTTTCAAGGTGGACTGATAAAGCCTCCATGCATCTCAAATGCCATTGGTAGAGAAAATT GTGCCTGTGCATTGCATAAATCGTTGTAA
Protein sequence (LotjaGi5g1v0292600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENSTEKNVTISLNIPQVRDSNESPRVVSNAKPFGEEEKHKEIPENNGHMICLPINSTGETQANLAQVIAHYVGTLNKKQ LRFLGYSTNQEFDYDALAPLLHFHINNAGDPFIGSSYSLNSVEFEVPVLDWFANLWEIEKEEYWGYVTTGGTEGNLYGIL SGREQFPNGILYTSQDSHYSIFKTVKMYRMQCIKVGTLISGEINYVDLKALLLAHKNRPAIINLNIGTTMKGAIDDIDHV IQTLEESGFSRDQFYIHCDGALSGIMLPFLKQAPKVTFKKPIGSISTSGHKFLGCPIPCGVVITRLEHVNALCRDVEYIK SRDVTITGSRCGLTPIFLWYALQEKGLIGLKKEAQKCITNANHLLDKLHENGIGAMQNKFSNTVVFERPLNDDFVQRWSL SCEGNIAHVVVMQHVTIEMLDSFVSELVKKRSIWFQGGLIKPPCISNAIGRENCACALHKSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 20 | 40 | 21 | - | – | |
| PANTHER | 23 | 460 | 438 | 1.4E-227 | – | |
| PANTHER | 23 | 460 | 438 | 1.4E-227 | – | |
| SUPERFAMILY | 76 | 429 | 354 | 1.61E-72 | ||
| Pfam | 97 | 373 | 277 | 3.7E-22 | ||
| Gene3D | 103 | 344 | 242 | 2.9E-51 | ||
| ProSitePatterns | 284 | 305 | 22 | - | ||
| Gene3D | 345 | 432 | 88 | 3.7E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Carboxy-lyase activity | Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound. | ||
| Biological process | Carboxylic acid metabolic process | The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-). | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi5g1v0292600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…