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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0294200 |
| Transcript ID | LotjaGi5g1v0294200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acidic endochitinase; TAIR: AT5G24090.1 chitinase A; Swiss-Prot: sp|P51614|CHIT3_VITVI Acidic endochitinase; TrEMBL-Plants: tr|I3S5N5|I3S5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0294200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61163836..61165844) extracted from Lotus japonicus Gifu genome v1.2.
GAATGAAGGAATGGTAGCCCACAAATTAATTGTCGGAAAAGATAGTTGTTGGCATCTATAAACCTTTTTGACCTTTGGGT GTCTTTAATTCAAAAGGAAAATACAAAATAAAATGGAATAAAATAAAAGTAATAGTAAATTTTTTTCTCAATTAACTTAA AATAAAATATCAAATAATTGTTTGTGTCTTTATTGCTCATACCATCAAAACTCTTCCTAAAAGTGCGGCTCTCAAGCATC GAACACTTAACCTAAGGGAAATAAGGAATACATTTTATTTCAATTTAATAAATATCTCTTTATTATTTTTGTCTCTTTCA TTTTGAAATACAACTAAATAATGAAATGATATACTTGTATGTTATTCAGTTTTAGCACTAGTTGACTTTCTCTTGTCAAC ACCATACTTTTTCAATTAGGAACCATCCTTCATTCCCATTCAAACTTTCAAAGCTTCAAGTTACCTACCATTCATCCTAT AAATACCCCAAGTGCAAGGAATCATTCAAAACACACACATACCAACAACAAAAACAGAGCACAAGATGGCCAAAAACTCC CATGCTCTGTTTTCTGCTCTGTTTTTTGTCCTCCTGATCGGAGCCTCCCATGCCGGTGGCGGCATAGCCATCTACTGGGG CCAAAACGGCAACGAGGGAACCCTCTCTGAAGCCTGCGCCACCGGAAAATACTCCCATGTCATCATAGCCTTCCTCAACA AGTTCGGCAATGGCCAAACCCCTGAAATGAACCTCGCCGGTCACTGCAACCCAGCTACCAACTCCTGCACCAAGTTCAGT GCAGACATCAAGGACTGCCAGAGAAGAGGAATCAAAGTGCTTCTCTCTATCGGTGGTGGAATCGGAAGCTACTCTCTGTC CTCCCCTAAAGATGCAAGAACAGTTGCAACCTTTTTGTGGAACACTTTCTTAGGGGGCAAGTCAACTTCAAGGCCATTAG GTAATGTTATGGTGTCACTTTAATTTATAGCATATTTGAGCATGATCATAATTTCATAAATATATGTTTATAACCATATT ATCTTTCACCCAAAAACTTAATACTCAATTTCGTCGTAAAGGTGGGTTAAATTAATTCTTAGAAAAATAAAACACTCGAG ATCTTTGACAGTATCAAATGTATAAAACTAGTCATTGACGTTTTATCCGACCGTAAGGACTAAATTGATCAATATTTGAT ACAACCAGAGATCACGAGAAATATGAATTAACTAACACGACTCTCGGGATTCGGGAACGAGATTTAGTTTTCACTATTTT TATTATACTCACACTTGAAGAATTCTTAACAGGTGATGCTGTGTTGGATGGCATTGATTTCGACATTGAACTTGGATCAA CACAAAATTGGGAGCATCTTGCACGTTTTCTCAAGGGTTATGGAAAAAGAGTGTACCTTGGTGCTGCACCTCAGTGTCCA ATTCCTGATAAGTTCTTAGGCACTGCACTTGAAACAGGACTTTTTGACTTTGTTTGGGTTCAGTTCTATAATAATCCTCC ATGTCAATATGCTAATGGGAACATCACTAACCTTGTGAATTCATGGAACCGTTGGACGAGTTCTGTTCATGCTGGGAAGA TATTTTTGGGGTTGCCGGCGGCTCCGGCGGCGGCGGGAAGCGGTTATATTCCGGCTGATGTGTTGAGTTCTCAAATATTG CCGGTGATAAAAAAGTCAACGAAGTATGGTGGGGTGATGCTTTGGTCAAGGTTCTATGATGGGCAGAATGGGTATAGTGA TTCCATTATTAGCAGCGTGTGAAGATGAAATAGTGGTTGTAACTTGTAATTGGTCAATGATTTCGTATTCATAGTTAAGT TGTTTTTTTTTTGTTACATATATTCATAGTTAAGTTGTGATTTCAAGTAGTTGAAGTATTGAATATTTTGCCATTTTTAA TGGGTCTCTTCATCCAATTAAAAGTTGCCGCCCTTAATGTTAGAAATAAAAATAATGGAAAATGAATGAGGATTTCTCTT ATTATTGAC
CDS sequence (LotjaGi5g1v0294200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAAAACTCCCATGCTCTGTTTTCTGCTCTGTTTTTTGTCCTCCTGATCGGAGCCTCCCATGCCGGTGGCGGCAT AGCCATCTACTGGGGCCAAAACGGCAACGAGGGAACCCTCTCTGAAGCCTGCGCCACCGGAAAATACTCCCATGTCATCA TAGCCTTCCTCAACAAGTTCGGCAATGGCCAAACCCCTGAAATGAACCTCGCCGGTCACTGCAACCCAGCTACCAACTCC TGCACCAAGTTCAGTGCAGACATCAAGGACTGCCAGAGAAGAGGAATCAAAGTGCTTCTCTCTATCGGTGGTGGAATCGG AAGCTACTCTCTGTCCTCCCCTAAAGATGCAAGAACAGTTGCAACCTTTTTGTGGAACACTTTCTTAGGGGGCAAGTCAA CTTCAAGGCCATTAGGTAATGTTATGGTGTCACTTTAA
Protein sequence (LotjaGi5g1v0294200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKNSHALFSALFFVLLIGASHAGGGIAIYWGQNGNEGTLSEACATGKYSHVIIAFLNKFGNGQTPEMNLAGHCNPATNS CTKFSADIKDCQRRGIKVLLSIGGGIGSYSLSSPKDARTVATFLWNTFLGGKSTSRPLGNVMVSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| PANTHER | 6 | 143 | 138 | 4.2E-66 | – | |
| PANTHER | 6 | 143 | 138 | 4.2E-66 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 145 | 122 | - | – | |
| SUPERFAMILY | 24 | 143 | 120 | 1.17E-40 | ||
| Gene3D | 25 | 143 | 119 | 2.4E-43 | – | |
| Pfam | 27 | 128 | 102 | 6.5E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi5g1v0294200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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