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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0295700 |
| Transcript ID | LotjaGi5g1v0295700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G52850.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850, chloroplastic; TrEMBL-Plants: tr|A0A0R0HXP2|A0A0R0HXP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0295700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61296614..61299900) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTGAAAAATTTGCTACACACCCCTCTTATAGTTTCCGACACTGTTTAAGGTAGCAGCATTCTATGCTACTTAGTTCT AAGCATAGCAATGATCTATTGTTGCTAACATTGAGGTTGTCTCCCCTAACGTAGACATGCTATGTAAAACAGCTTCTCAT AGTTTTTCTCCATGCCGCCTTCAAGAAACTTGCTTGCGGGTTCTTTCTTTCTGCAACTCAAACTCCCTCAAAGAAGGGGT ATGTGTTCACAGCCCCATTATCAAACTGGGTTTAGAAGATGACTTGTATTTGAACAACAATTTGCTGTCTTTGTATGCTA AATGCTATGGAGTTCGACAAGCACGCTATCTATTCGAAGAAATGCCGTACAGAGATGTTGTGTCCTGGACAACTATTCTG TCTGCTCATACCAAGAATAAGCATCATTTTGAGGCCCTTGAGTTGTTTGAAATGATGCTGGGTTCTGGTCAGAACCCGAA CGAGTTCACCTTGTCGAGTGCCTTGAGATCATGTTCTGCTTTGGGGGAGATTGAGTGTGGTGCTCAAATTCATGCCTCTG TTGTGAAGATTGGGTTAGAGGTGAATCCGGTTCTGGGAACTTCGTTGATTGAGTTATACACCAAGTGGGATTGTACTGTG GACACGTACAAATTGCTTGAATTTGTGAAGGGTGGTGATATTGTGTCATGGACAACGATGATCTCTTCTTTAATTGAAAC TAGTAAATGGAGTGAAGCTCTAGAAATCTATGGCAAGATGATTGAAACGGGTGTTTGTCCAAACGAGTTCACATTTGTTA AACTCTTAGGCTTGTCTTCTTTTCTTGGTTTGGGTTATGGGAAGCTACTACATGCACAGTTAATCAGATTTGGTATTGGA ATGAATTTGGTGTTGAAAACCGCCATTGTTGACATGTATTCCAAATGCAGACGGATGGAAGATGCAATTAAGGTCTCCAA CCTGACAACCGAATATGATGTGTGCTTGTGGACCACCATTATCTCTGGATTTACCCAAAATTTGCAGGTTAGAGAGGCTG TCAATGCATTTCTTGATATGGAATTGTCTGGAATCCTACCAAATAATTTTACATATGCTAGTTTATTGAATGCTAGCTCC TCAATTTTATCATTGGGCCTGGGGGAACAGTTTCATTCACGGGTTATCATAATTGGACTGGAGGATGATATATATGTGGG AAATGCACTGGTGGATATGTACATGAAATGCTCCAGCATCACAAAAGGTGCAGTGAAAGCTTTTAGAGCGATAGCCTCAC CAAATGTCATATCTTGGACTTCTTTGATTGCTGGCTTAGCAGAACATGGATTTGAAAAAGAATCTTTTCAGTTGTTTGCT GAGATGCAAGCAGCAGGAGTGCAACCAGATTCCTATACTCTATCTACTGTTCTTGTAGCTTGCAGCAATATAAAGTCTCT TGTTCAAACTATGAAACTCCATGGACATATCATAAAAACAAAAGCAGACATTGATATAGCTGTTGGGAATGCTCTTGTAG ATGCTTATGCTAGAGGGGGAATGGCGGAGGAAGCATGGTCTGTTATTGGCATGATGAATCATAGAGATCCCATCACATAC ACAAGTTTAGCTGCAAGATTAAACCAGAGGGGCGATCATGACATGGCATTAAAAATAGTGACTCGCATGTGCAATGATGA GGTTAAGATGGACGAATTCAGCTTGGCGAGTTTTCTATCAGCTGCAGCTGGCTTAGGGACTATGGGAACCGGAAAGCAGC TACATTGCTATTCTGTCAAAACAGGTTTTGAGAGATGTAACTCAGTTTCAAACAGCTTAGTTCACTTGTACAGCAAGTGC GGTAGTATGCACGATGCAAAGAGAGCTTTCAAAGAGATAACTGAGCCAAATGAAGTTTCATGGAACGGTTTGATATCAGG ATTGGTATCAAATGGACAAACATCCCATGCTCTTTATGCCTTTGATGAAATGAGGTTAGCAGGAGTCAGACCTGATTCTG TCACATTCATGTCACTGATTTCTGCTTGCAGCCATGGTGGTTTATTGGATCAGGGCCTTGAGTATTTCTATTCTATGGAA AAAGCATACCATATAAAACCAAAATTGGATCATTACGTGTGTTTAGTTGATCTCCTTGGTAGAGGTGGTCGCGTAGAGGA AGCTATGGGAGTTATTGAAACAATGCCCTTCGAGCCGGACGCCATAATTTGTAAAACTTTATTAAATGCTTGCAAGTTAC ATGGAAATGTTGCCCTAGGAGAAGATATGGCAAGGCAATGTCTTGAGCTTGATCCATCTGATCCTGCAATATATTTGCTG CTTGCAAACTTGTATGACAGTGCAGGACTCAATGATTTCGGAGATAAAACTCGCAAGCTGATGAGAGAAAGAGGTTTAAG GAGAAGTCCTGGGCAGTGCTGGATGGAGGTAAGAAGCAAGATTCATAACTTCTCTGCTAGAGAGAAGATTGATGAGAATG AGATTACTCAAAAACTGGAGTTTATTATAACTGAATTTAAGAATAGAGGGTATCCTTACCAAGAGAATGAAGATAAGTTG TACCATTCAGAGCAATTAGCCTTTGCATTTGGTCTTCTTAATGTACCAACTATGGCTCCAATACGCATAAACAAAAATTC ACTGATATGCCCTCACTGCCATACTTTTGTAATGTTGGCCACACAAGTAGTTCGTAGGGAGTTAATTGTGAGGGATAGGA GACGGTTGCATTTCTTTAAGGATGGCCAGTGTTCATGCAGAGGTCACTCTTAATGCCTAACGTTTTCTTGATTTTAGTCT CATGAATAGAAACTTGATAGGATCAAAATCTATGTCCCAAAATTGTCTCATATTTCTGTGTTACCAATGAAATTTTGTAG GGTCAATTAAAAAACACTCATGATTCTTTTGGTGTTTCCAAGTCTTGTACTACTTGAAATAAATGCTAGTAACTTTAAAG TCCTCAAAGCTTTTACTCTGTATTGACTATTGAGTCAGATTCTCCCAGGTACATTATATGTTATCAGAGGCCCCATGTTA TCAAATATTTCTGTGAAATATATATTGTGCTTCTCATAATCTCTATAGCTAGCAAGTGTAGAAGGATGTGAAGTTGTATT GCAAACTACTCAAATACAAACATTTGTAAATTGGAAGAGTTAGCTTGGGAGTTGCAACTTGCAAATGCTGGAGTATTTAT TTTCATTAGAAAAGGTATGTGCTTATTTAATTAATAAGGCCTTCTATTTCTTTGTAATCAACTCACAATCCACCCATTTG CATCTGA
CDS sequence (LotjaGi5g1v0295700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTATGTAAAACAGCTTCTCATAGTTTTTCTCCATGCCGCCTTCAAGAAACTTGCTTGCGGGTTCTTTCTTTCTGCAA CTCAAACTCCCTCAAAGAAGGGGTATGTGTTCACAGCCCCATTATCAAACTGGGTTTAGAAGATGACTTGTATTTGAACA ACAATTTGCTGTCTTTGTATGCTAAATGCTATGGAGTTCGACAAGCACGCTATCTATTCGAAGAAATGCCGTACAGAGAT GTTGTGTCCTGGACAACTATTCTGTCTGCTCATACCAAGAATAAGCATCATTTTGAGGCCCTTGAGTTGTTTGAAATGAT GCTGGGTTCTGGTCAGAACCCGAACGAGTTCACCTTGTCGAGTGCCTTGAGATCATGTTCTGCTTTGGGGGAGATTGAGT GTGGTGCTCAAATTCATGCCTCTGTTGTGAAGATTGGGTTAGAGGTGAATCCGGTTCTGGGAACTTCGTTGATTGAGTTA TACACCAAGTGGGATTGTACTGTGGACACGTACAAATTGCTTGAATTTGTGAAGGGTGGTGATATTGTGTCATGGACAAC GATGATCTCTTCTTTAATTGAAACTAGTAAATGGAGTGAAGCTCTAGAAATCTATGGCAAGATGATTGAAACGGGTGTTT GTCCAAACGAGTTCACATTTGTTAAACTCTTAGGCTTGTCTTCTTTTCTTGGTTTGGGTTATGGGAAGCTACTACATGCA CAGTTAATCAGATTTGGTATTGGAATGAATTTGGTGTTGAAAACCGCCATTGTTGACATGTATTCCAAATGCAGACGGAT GGAAGATGCAATTAAGGTCTCCAACCTGACAACCGAATATGATGTGTGCTTGTGGACCACCATTATCTCTGGATTTACCC AAAATTTGCAGGTTAGAGAGGCTGTCAATGCATTTCTTGATATGGAATTGTCTGGAATCCTACCAAATAATTTTACATAT GCTAGTTTATTGAATGCTAGCTCCTCAATTTTATCATTGGGCCTGGGGGAACAGTTTCATTCACGGGTTATCATAATTGG ACTGGAGGATGATATATATGTGGGAAATGCACTGGTGGATATGTACATGAAATGCTCCAGCATCACAAAAGGTGCAGTGA AAGCTTTTAGAGCGATAGCCTCACCAAATGTCATATCTTGGACTTCTTTGATTGCTGGCTTAGCAGAACATGGATTTGAA AAAGAATCTTTTCAGTTGTTTGCTGAGATGCAAGCAGCAGGAGTGCAACCAGATTCCTATACTCTATCTACTGTTCTTGT AGCTTGCAGCAATATAAAGTCTCTTGTTCAAACTATGAAACTCCATGGACATATCATAAAAACAAAAGCAGACATTGATA TAGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTAGAGGGGGAATGGCGGAGGAAGCATGGTCTGTTATTGGCATGATG AATCATAGAGATCCCATCACATACACAAGTTTAGCTGCAAGATTAAACCAGAGGGGCGATCATGACATGGCATTAAAAAT AGTGACTCGCATGTGCAATGATGAGGTTAAGATGGACGAATTCAGCTTGGCGAGTTTTCTATCAGCTGCAGCTGGCTTAG GGACTATGGGAACCGGAAAGCAGCTACATTGCTATTCTGTCAAAACAGGTTTTGAGAGATGTAACTCAGTTTCAAACAGC TTAGTTCACTTGTACAGCAAGTGCGGTAGTATGCACGATGCAAAGAGAGCTTTCAAAGAGATAACTGAGCCAAATGAAGT TTCATGGAACGGTTTGATATCAGGATTGGTATCAAATGGACAAACATCCCATGCTCTTTATGCCTTTGATGAAATGAGGT TAGCAGGAGTCAGACCTGATTCTGTCACATTCATGTCACTGATTTCTGCTTGCAGCCATGGTGGTTTATTGGATCAGGGC CTTGAGTATTTCTATTCTATGGAAAAAGCATACCATATAAAACCAAAATTGGATCATTACGTGTGTTTAGTTGATCTCCT TGGTAGAGGTGGTCGCGTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCCTTCGAGCCGGACGCCATAATTTGTAAAA CTTTATTAAATGCTTGCAAGTTACATGGAAATGTTGCCCTAGGAGAAGATATGGCAAGGCAATGTCTTGAGCTTGATCCA TCTGATCCTGCAATATATTTGCTGCTTGCAAACTTGTATGACAGTGCAGGACTCAATGATTTCGGAGATAAAACTCGCAA GCTGATGAGAGAAAGAGGTTTAAGGAGAAGTCCTGGGCAGTGCTGGATGGAGGTAAGAAGCAAGATTCATAACTTCTCTG CTAGAGAGAAGATTGATGAGAATGAGATTACTCAAAAACTGGAGTTTATTATAACTGAATTTAAGAATAGAGGGTATCCT TACCAAGAGAATGAAGATAAGTTGTACCATTCAGAGCAATTAGCCTTTGCATTTGGTCTTCTTAATGTACCAACTATGGC TCCAATACGCATAAACAAAAATTCACTGATATGCCCTCACTGCCATACTTTTGTAATGTTGGCCACACAAGTAGTTCGTA GGGAGTTAATTGTGAGGGATAGGAGACGGTTGCATTTCTTTAAGGATGGCCAGTGTTCATGCAGAGGTCACTCTTAA
Protein sequence (LotjaGi5g1v0295700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCKTASHSFSPCRLQETCLRVLSFCNSNSLKEGVCVHSPIIKLGLEDDLYLNNNLLSLYAKCYGVRQARYLFEEMPYRD VVSWTTILSAHTKNKHHFEALELFEMMLGSGQNPNEFTLSSALRSCSALGEIECGAQIHASVVKIGLEVNPVLGTSLIEL YTKWDCTVDTYKLLEFVKGGDIVSWTTMISSLIETSKWSEALEIYGKMIETGVCPNEFTFVKLLGLSSFLGLGYGKLLHA QLIRFGIGMNLVLKTAIVDMYSKCRRMEDAIKVSNLTTEYDVCLWTTIISGFTQNLQVREAVNAFLDMELSGILPNNFTY ASLLNASSSILSLGLGEQFHSRVIIIGLEDDIYVGNALVDMYMKCSSITKGAVKAFRAIASPNVISWTSLIAGLAEHGFE KESFQLFAEMQAAGVQPDSYTLSTVLVACSNIKSLVQTMKLHGHIIKTKADIDIAVGNALVDAYARGGMAEEAWSVIGMM NHRDPITYTSLAARLNQRGDHDMALKIVTRMCNDEVKMDEFSLASFLSAAAGLGTMGTGKQLHCYSVKTGFERCNSVSNS LVHLYSKCGSMHDAKRAFKEITEPNEVSWNGLISGLVSNGQTSHALYAFDEMRLAGVRPDSVTFMSLISACSHGGLLDQG LEYFYSMEKAYHIKPKLDHYVCLVDLLGRGGRVEEAMGVIETMPFEPDAIICKTLLNACKLHGNVALGEDMARQCLELDP SDPAIYLLLANLYDSAGLNDFGDKTRKLMRERGLRRSPGQCWMEVRSKIHNFSAREKIDENEITQKLEFIITEFKNRGYP YQENEDKLYHSEQLAFAFGLLNVPTMAPIRINKNSLICPHCHTFVMLATQVVRRELIVRDRRRLHFFKDGQCSCRGHS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 134 | 129 | 6.5E-18 | ||
| PANTHER | 17 | 146 | 130 | 8.5E-134 | – | |
| ProSiteProfiles | 49 | 79 | 31 | 6.336 | ||
| Pfam | 80 | 126 | 47 | 1.1E-8 | ||
| ProSiteProfiles | 80 | 114 | 35 | 10.698 | ||
| TIGRFAM | 82 | 116 | 35 | 3.6E-5 | ||
| ProSiteProfiles | 115 | 149 | 35 | 6.708 | ||
| Gene3D | 135 | 232 | 98 | 1.5E-11 | ||
| PANTHER | 135 | 226 | 92 | 8.5E-134 | – | |
| Pfam | 181 | 224 | 44 | 1.4E-8 | ||
| ProSiteProfiles | 181 | 215 | 35 | 11.915 | ||
| TIGRFAM | 183 | 217 | 35 | 7.7E-8 | ||
| Gene3D | 233 | 340 | 108 | 1.1E-14 | ||
| PANTHER | 234 | 330 | 97 | 8.5E-134 | – | |
| ProSiteProfiles | 250 | 280 | 31 | 5.382 | ||
| ProSiteProfiles | 281 | 315 | 35 | 9.416 | ||
| Pfam | 281 | 326 | 46 | 1.6E-9 | ||
| TIGRFAM | 284 | 316 | 33 | 0.0011 | ||
| ProSiteProfiles | 316 | 350 | 35 | 5.031 | ||
| PANTHER | 329 | 434 | 106 | 8.5E-134 | – | |
| Gene3D | 341 | 437 | 97 | 2.0E-15 | ||
| Pfam | 382 | 429 | 48 | 1.3E-10 | ||
| ProSiteProfiles | 383 | 417 | 35 | 11.455 | ||
| TIGRFAM | 385 | 419 | 35 | 1.2E-5 | ||
| ProSiteProfiles | 418 | 452 | 35 | 5.24 | ||
| Gene3D | 438 | 548 | 111 | 1.1E-12 | ||
| PANTHER | 440 | 531 | 92 | 8.5E-134 | – | |
| ProSiteProfiles | 453 | 483 | 31 | 8.057 | ||
| Pfam | 458 | 481 | 24 | 0.011 | ||
| ProSiteProfiles | 484 | 518 | 35 | 8.429 | ||
| ProSiteProfiles | 519 | 553 | 35 | 5.042 | ||
| PANTHER | 523 | 746 | 224 | 8.5E-134 | – | |
| ProSiteProfiles | 554 | 584 | 31 | 6.412 | ||
| Gene3D | 555 | 793 | 239 | 8.8E-38 | ||
| Pfam | 559 | 582 | 24 | 0.12 | ||
| Pfam | 584 | 632 | 49 | 4.8E-11 | ||
| ProSiteProfiles | 585 | 619 | 35 | 11.367 | ||
| TIGRFAM | 587 | 621 | 35 | 2.6E-8 | ||
| ProSiteProfiles | 620 | 650 | 31 | 8.561 | ||
| ProSiteProfiles | 656 | 686 | 31 | 6.665 | ||
| Pfam | 660 | 683 | 24 | 0.28 | ||
| ProSiteProfiles | 722 | 756 | 35 | 6.226 | ||
| Pfam | 758 | 868 | 111 | 1.2E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi5g1v0295700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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