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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0296000 |
| Transcript ID | LotjaGi5g1v0296000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Leucine-rich repeat receptor-like protein kinase family protein; TAIR: AT2G34930.1 disease resistance family protein / LRR family protein; Swiss-Prot: sp|Q9MA83|RLP30_ARATH Receptor like protein 30; TrEMBL-Plants: tr|G8A217|G8A217_MEDTR LRR receptor-like kinase; Found in the gene: LotjaGi5g1v0296000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61311257..61312235) extracted from Lotus japonicus Gifu genome v1.2.
TGCTTACTAGCTAGCTATGTCTATAAATATAACTTGTGAGTGAAATGAAAGGCATGAATGAAGAATATCTAATAGAAAAA TATTGTTTCACACCATGGGAAGAATAAGATACAATGTGAGTGTTCCATCATCTGTTTCTAGAAATAAAATCATTTTCTTT CTGTTGGTTCAAATTGCACAACTCTGCTGTTTCTTCTTGTGTGCAAATTCAAACAGTGTCACTGTCCCTCCCTGCATAGA ACGAGAGAGGCAAGCTCTTCTCGAGTTCAAAGCATCCCTTATAAAAGTTCCAGCAAAGAGGATTTCATCATGGAAAGATA GTAGTACTAATTGTTGCGAATGGGAAGGCATAGGATGTGACAATGTTACTGGACATGTTGTCAAGCTTGATCTCAGGAAT CCTTGCTTCAAGCTAGCAGCAGAAGTAGAAGAAGGAAAAGAATTTAGTCTGCCATATGGATGTGACTACGGATTCAAATT CAATAGTAACGAGAACGGTGTGGAATTAAAATTTTCTATACAAGCTCCAAATGTGAGTCAATCTCTGTTGCGATTGGATC ACTTGACTTACTTGGACTTGACAGGAAATAATTTCAGTTCCAGTCCAATACCAGACTCCATTGGTAATTCTATGGGACGA TTGAGGTATCTTTCTCTCTCTCATGCTAATTTTGGTGGAAAGATTCCCAGCAGTTTGAGAAATCTCAAGAACCTGCACCA TCTTGACCTCCAGGGACGGATGTACATTGGCCAAGGGTGGGGCAAATGCCCCCACCTGATTTTCATAAAAAGCACTAATG ATATTAGTATTCAGATGTATTGTCCCCAGTAAATAATTACAAATGCCCCCATGCACTCATAATGCACCGGTCATAAGTTT AAACTTTAAGCTTACAGTAAGTGCCCCACGCACTCAAATTCTGATTTTCTATTAATTTGTGCTGTGTACGACGCGACATA TATATACATGATATTTTAC
CDS sequence (LotjaGi5g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAATAAGATACAATGTGAGTGTTCCATCATCTGTTTCTAGAAATAAAATCATTTTCTTTCTGTTGGTTCAAAT TGCACAACTCTGCTGTTTCTTCTTGTGTGCAAATTCAAACAGTGTCACTGTCCCTCCCTGCATAGAACGAGAGAGGCAAG CTCTTCTCGAGTTCAAAGCATCCCTTATAAAAGTTCCAGCAAAGAGGATTTCATCATGGAAAGATAGTAGTACTAATTGT TGCGAATGGGAAGGCATAGGATGTGACAATGTTACTGGACATGTTGTCAAGCTTGATCTCAGGAATCCTTGCTTCAAGCT AGCAGCAGAAGTAGAAGAAGGAAAAGAATTTAGTCTGCCATATGGATGTGACTACGGATTCAAATTCAATAGTAACGAGA ACGGTGTGGAATTAAAATTTTCTATACAAGCTCCAAATGTGAGTCAATCTCTGTTGCGATTGGATCACTTGACTTACTTG GACTTGACAGGAAATAATTTCAGTTCCAGTCCAATACCAGACTCCATTGGTAATTCTATGGGACGATTGAGGTATCTTTC TCTCTCTCATGCTAATTTTGGTGGAAAGATTCCCAGCAGTTTGAGAAATCTCAAGAACCTGCACCATCTTGACCTCCAGG GACGGATGTACATTGGCCAAGGGTGGGGCAAATGCCCCCACCTGATTTTCATAAAAAGCACTAATGATATTAGTATTCAG ATGTATTGTCCCCAGTAA
Protein sequence (LotjaGi5g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRIRYNVSVPSSVSRNKIIFFLLVQIAQLCCFFLCANSNSVTVPPCIERERQALLEFKASLIKVPAKRISSWKDSSTNC CEWEGIGCDNVTGHVVKLDLRNPCFKLAAEVEEGKEFSLPYGCDYGFKFNSNENGVELKFSIQAPNVSQSLLRLDHLTYL DLTGNNFSSSPIPDSIGNSMGRLRYLSLSHANFGGKIPSSLRNLKNLHHLDLQGRMYIGQGWGKCPHLIFIKSTNDISIQ MYCPQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 19 | 37 | 19 | - | – | |
| PANTHER | 20 | 218 | 199 | 9.9E-38 | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| PANTHER | 20 | 218 | 199 | 9.9E-38 | – | |
| Phobius | 38 | 41 | 4 | - | – | |
| Phobius | 42 | 245 | 204 | - | – | |
| SUPERFAMILY | 46 | 229 | 184 | 8.5E-19 | – | |
| Gene3D | 47 | 240 | 194 | 1.3E-38 | ||
| Pfam | 50 | 89 | 40 | 1.2E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0296000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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