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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0296400 |
| Transcript ID | LotjaGi5g1v0296400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT5G52660.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q8H0W3|RVE6_ARATH Protein REVEILLE 6; TrEMBL-Plants: tr|K7LKZ8|K7LKZ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0296400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61338162..61342483) extracted from Lotus japonicus Gifu genome v1.2.
TGTAAGAAAATCAACATTCCAATAAGTAAAATCATTTAGAGCAAAAGTTGGGTCACTTTTTCCATGATACATTGCCTCCA TCTCCATCCTTGTATTGTATATATAAAAAAAAAGACATTAGAAAATAGTTAGAAGGAAGAACACCAAGCTTTATTAAAAC GCAAAAACATTTGATTTGTCAAATGTTATGGCCAGCAAGGATTGGCAGTTGTAAATACTACTTTAGATTCTGCAGTTAAA GCCATTTTCTTTCTCTTTGAAACCCCACGAAAATGGTGTCAGAAAACCCGAATGCTTCAGAGGCTATATACTTGGAACCC TTAGCAGATTCGGTGGAGGACCCTGCCAAGAAGACACGCAAACCATACACCATCACCAAGTCTAGAGAGAACTGGACCGA ACCTGAGCATGATAAGTTCCTTGAAGCTCTTCAACTGTAAGAAAATGAAAAGTTTTCCTTTTTTTTCATCTTCTTCTTCT TATTTTGTTCTCAGAATGTAGTGTGTGAATTTTGAAGTTCAACTGAGACATGGGTTTTAGTGGTACCCTTGTGTGTGTGT GTGTGTCACTGTTTGAGTCATGGTTTCAGGAAGCTACTTATGGAGAATTTTCACAATTGTTTGTCAAGGACTGAGATTTT GGTATTTCAGATTGGTTTGGCAGGGGAAGAATAAAAGATGTTAGGAATGGTCAATGGGGAGGGTAGAGTTTTATTACTAC TGTTATCAACTTATCATTGTTATTTGGTGATTGTTGTCAAAATACACTATGTGAATCAGTGAATGTGATCAATTCATTCT TTTTGGGGGGGCTTCTTATAATGGTTGAACTTAGTTTACTATTCCTAAATGGAATTTGCCATTTCAAATTTAAGCAATTT GTTTGTTTTTCCTTTTTCCTGGTCTTGGTGTAACCATTTAGCATCAACTCATTGTTTTGTTTCTTTCATTTTGGATCCAG ATTTGACCGTGACTGGAAAAAGATTGAAGCTTTTGTTGGATCAAAAACAGTTATCCAGGTAATTTCAAGTGCAATCGTTG ATTAGAAATTGTCATAAGCTGTTACTTCTGGGTACCATTGGCCATAAATATTTTGGATTGCATTAGTTATCTTATAATTT ATGGAATCAGAATGTGAATATTGGTTATGTTACATTAAGGATTTCATCCCTTGCCAGATAAAGTGTTGGATGCTGGAAAT GAAATGCCAAAAAAGGATATTTCCCTTTCTCTCCCTGCCTCCATTGCTAATTGGACTGATTTCTTGAAAACCCTGATACA TATGACTTTTCCTTTTGTTTGGTGGGACTAAAATTGTGAAACCTGATAGTCATATTCATATACCAACTTGCTTTTCTTTT GAGGAAAGTTCCAATAGCATTCATTTAAGATTAACTTAAGCTATTATGCGGGTTCCATGTGCTTGTTATACAAGGATCAA ATCATGCTGTGACTTTTAAGTAAAGAAAGTTGAGGACAAAGAAAGCATTAAGCTTTTCATATTTTAAATTGTGGACTAAG CACAGGCTCATCAAGCCTCATGCTGAAATGCAATTTAGTTTAGAAGAATAGAGATTATAAGGATTAAACTCATGAATATT TAGTCACAAAAGTTTTTGTACCAAGTCAAAGAACCAACTATCCTTGGTGTTTACTGTTTAATATGTTAGTTGTAGCTTTG GGAATGTATTTATCGTCTAACAAGAATGATGCAAATTTTCTTAAATGGGATACCATCATTGACTAACATGAAAAGCAGAC TTCTTTTATGTTGTTAAAAGAAAGAAACAGTTTCATTGGGGAATATTTTAGAATATCTTTTAAATGTCTGTTAGTTGAGT GCTTACAGCTTAATGGATTCAAAGATGTCAGTGCATATGACAGTTGGGAGTTGTTAGGATTTCTATTACTTTTTCATGTG CTTCAATGTTTAATGGATGCCTCAAGTACCCATAAGAATGACTGCTGATTTTGTAGATACGTAGCCATGCACAGAAATAT TTTCTTAAAGCTCAGAAGAGTGGGAAAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCGGCTCATCCATATCC TCAGAAAGCTTCCAACAACGGTTACAATCTTCACCATATTTTGTTTACAACATATTTTAGATTAATTGTATCTAATGATT GTAAGTGATATTTGACAGTTCCAGTACTCTCGCATGTTTTAGGATCCTCTCAATCTTCATCTGCTTTGCTTGAACCTGGA TCCATCCCCAAGCATGAATCTTCGCCAATTCTTAAAACTCCTATACTTAACACTTCAGTTTCTTCCGGGTCAAACAACAC TTTGCAGACAACAGCCAATGTATTACATGGTACTGAAAATTTAGATTTTATAATCCTGGAATATATTTATGGAACTTGTT TGGATAGTTTTCGTATGATACCAACTAGTTTGTTGTGTTTAAATATTGTGTGTTTTAGGTCAAAAAGTGAATAATTGTTG CAGCAGCAATGAAAGCACTCCTAGAGCACGCGTGGTTGGTGAATCTAATGGTCAAGGAAATAATAACCATCCATTGAAAG GCAAGGGTTTAATGATTTTCCTTTCTAATTTCAGTGCTGTCATCTTTGATTGTTACATTAAATTTGATGTGTGCATGACA AGGTTATGGAGTGTTGTTGTAAGCATAATTTGTGCACAACTGCATATTTCAGCAATTATGTTATTGCTTTATAGTGTATT CCTGTTTTATTATCAAGAATATAACTGTGTTGGGTCCAAAGTAAGTATGGAGTCTCTTAATTTCCAATCCCCTTCTTGGA CATGAATCTTGATTATCATCATCTGAGTCGCCAAAATATTCATTTGATATTTCCTTGATGGTACCTTCAATTTATGAAAT TTGATACGCTTTCGTATCTTGAACATTTTGTTATTTTAATGTGTACTCAACATGTGGAAGTGATGTCTGTCCTGTTTTTC TTGTTCTGCGACTCATTTCTTATGAGAATACCCAGAAAGCTGTCTTATCCTCATAGGAGTTTTACAAACTCCCACCTACT CATGTCAATATAGCTACATACATTCGAAGTTATGTGCACAATTCTGTAATAATTTTCTTTTCATAGAAGTTACGCATATG ATTTTTGTAGCTTTTTTAGTATTTATTGTTGTCTCACTGTTTTCCAATGTCAATTTAATTTTCCCCTCATTTGTAATGCA GTTCTTCCTGATTTCACTCAAGTATACAGATTCATTGGCAGTGTATTTGACGCAAATGTAACTGGGCATCTACAGAAACT TAAAAAGATGGACCCTTTAGATGTTGAGACGGTATGTGTTTGTGTGATTTCTTGCTTTGAACTCCCTTAAGACATTAAAG CATTATTTCTTGCTTTGAATACCTGTGTTAATTTGTGTCAACTAGTACAATTCAGAAGTTCTGAGACATTTCTTCTTTTT ATGACCTTGAATATTTTTAGGTGCTGCTGTTGATGAGAAACCTGTCTATCAATTTAACAAGTCCAGGTTTCGAGGATCAC GTAAGTATTCATGCCACTGATCTTTGGATTACTTAATGCATGAACCTCACCACTATTTTGACCCAACATCAAATTTTCTC TTTAAAAGAACTTGTTTAAGGATCCTTACTCCTTAGCTTTAGAAGGCCGTCCCTATATATTCCTCATCTTTTGAAAACTG TCCATCTCCGACAAAAGCATCTTATGCAGATTGGAAATTTCATCTTCATAGAAACTTGAATGACTAAATTAGACATCAAA TTGCATGACCAATGAAAGAAGGAACAATAATAAATTTCATTTATATGTGAACCGGTTGTAATTCATGCAGAGAAGGCTGC TCGCGTCATATGAGGTGGAACCCGAGATAGATAATTATATCAATGTAGATCAAGCCATGCATGATGAGCAGTTGAAGAGT GCTACTTAGATGGAGGGGAGGTTGAATATAAAATTGGCTGTTTTTCATGCATTTCTGCATGATGAGGTAAGATGCCTCGG CAAGAAAACAAGCTGAGATTCCAGCAACAGTCTTATGATCCTGCTCTAATTAGTGGCTTATGTTGCTCATCGATCATCTC AGCTTAACAAGGCTTTTGATTCCCACAATTCGATTCGGTGATGTATATATTAATGAAACATATTATAGAAGAAAATAATA ATGCTGGACTCTATAGATTTCATATTTTTGTAATATCCGAGACAGTACTAGCAAGTTGATGACTTTGTAAACAATATATA CGTTTGTTTGCCTTAGGAAGGGAATGCAATTTCAAAAAGGATGTAAAATACTTCATATTAATGTAGTGTTTATTCTATTT AA
CDS sequence (LotjaGi5g1v0296400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCAGAAAACCCGAATGCTTCAGAGGCTATATACTTGGAACCCTTAGCAGATTCGGTGGAGGACCCTGCCAAGAA GACACGCAAACCATACACCATCACCAAGTCTAGAGAGAACTGGACCGAACCTGAGCATGATAAGTTCCTTGAAGCTCTTC AACTATTTGACCGTGACTGGAAAAAGATTGAAGCTTTTGTTGGATCAAAAACAGTTATCCAGATACGTAGCCATGCACAG AAATATTTTCTTAAAGCTCAGAAGAGTGGGAAAAGTGAACATCTTCCTCCACCCAGACCAAAACGAAAAGCGGCTCATCC ATATCCTCAGAAAGCTTCCAACAACGTTCCAGTACTCTCGCATGTTTTAGGATCCTCTCAATCTTCATCTGCTTTGCTTG AACCTGGATCCATCCCCAAGCATGAATCTTCGCCAATTCTTAAAACTCCTATACTTAACACTTCAGTTTCTTCCGGGTCA AACAACACTTTGCAGACAACAGCCAATGTATTACATGGTCAAAAAGTGAATAATTGTTGCAGCAGCAATGAAAGCACTCC TAGAGCACGCGTGGTTGGTGAATCTAATGGTCAAGGAAATAATAACCATCCATTGAAAGTTCTTCCTGATTTCACTCAAG TATACAGATTCATTGGCAGTGTATTTGACGCAAATGTAACTGGGCATCTACAGAAACTTAAAAAGATGGACCCTTTAGAT GTTGAGACGGTGCTGCTGTTGATGAGAAACCTGTCTATCAATTTAACAAGTCCAGGTTTCGAGGATCACAGAAGGCTGCT CGCGTCATATGAGGTGGAACCCGAGATAGATAATTATATCAATGTAGATCAAGCCATGCATGATGAGCAGTTGAAGAGTG CTACTTAG
Protein sequence (LotjaGi5g1v0296400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSENPNASEAIYLEPLADSVEDPAKKTRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQ KYFLKAQKSGKSEHLPPPRPKRKAAHPYPQKASNNVPVLSHVLGSSQSSSALLEPGSIPKHESSPILKTPILNTSVSSGS NNTLQTTANVLHGQKVNNCCSSNESTPRARVVGESNGQGNNNHPLKVLPDFTQVYRFIGSVFDANVTGHLQKLKKMDPLD VETVLLLMRNLSINLTSPGFEDHRRLLASYEVEPEIDNYINVDQAMHDEQLKSAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 17 | 283 | 267 | 9.9E-156 | – | |
| PANTHER | 17 | 283 | 267 | 9.9E-156 | – | |
| SUPERFAMILY | 32 | 88 | 57 | 4.64E-16 | ||
| ProSiteProfiles | 33 | 87 | 55 | 14.109 | ||
| TIGRFAM | 36 | 85 | 50 | 2.1E-18 | ||
| SMART | 37 | 85 | 49 | 4.8E-10 | ||
| Pfam | 38 | 82 | 45 | 3.8E-10 | ||
| CDD | 40 | 83 | 44 | 3.60509E-8 | ||
| Gene3D | 40 | 88 | 49 | 2.4E-16 | – | |
| MobiDBLite | 86 | 114 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi5g1v0296400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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