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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0300900 |
| Transcript ID | LotjaGi5g1v0300900.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G55630.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9M1D8|PP288_ARATH Pentatricopeptide repeat-containing protein At3g60050; TrEMBL-Plants: tr|K7N3Q4|K7N3Q4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0300900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61830636..61832078) extracted from Lotus japonicus Gifu genome v1.2.
ATGAATTTGTTAGCCCGTTTAGGTCCAAAGATGGTCCATAGATTATCTCATTGTTTGATTATTTCGCGGCGATTATGCGA CCGTCCGTTTGGCGGTGATGGGTTTGAATGTGTTGAGGAGCCTTTGAAAAAACTAGGTTCAGATTATGATTCCTCTGTGG ATGAATGGTTCCAGTTGAATGAGGAGTCGAGCGGTAACCAAAAACCCTTTTCACTTCGAAAAGGGTTCTTAGAAAGTGTT AAGTTAGATGCTAAGAGAGTCCTTGAGATACTGAGACAAGATGGTCCTGGTCTTGATGCTAGGGTGGTTTTAGATGAGTT GCAGGTTAGGCCATCGGGGCTTCTTGTGAGGGAGGTTCTCGTTGGAATTTTGAAGAGCATTAATCATGAGAATAGGACTA GGTGTGCAAAGCTGGCCTACAAGTTTTTTGTGTGGTGTAGTCAGCAGGAGGCTTATCAGCACACTGCGAATGCGTATCAC TTGATTATGAATATATATGCTGAGTGTGAGGAGTATAAGGCGTTGTGGAGGTTGGTTGGTGAGATGATTGAGAAAGGGTT TCCGGCTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGTGAGGCAGGCTTGGCGAAGGATTTGGTGGAGACGT TCATAAAGTCGAAGACGTTCAACTATAGGCCTTTTAAGCACTCCTACAATGCAATCCTACACAGTCTTCTAGTTTTAAAC CAGTACAAGTTGATTGAGTGGGTTTATCAACAGATGCTGCTTGATGGTTTTTCCTCAGATATTTTAACTTACAATATTGT CATGTATGCCAAGTACAGACTTGGGAAGTTGGACCAGTTCCAGATACTGTTTAAAGAGATGGGCAGAAATGGATTTTCTC CAGATTTTCATACCTACAACCTCCTTCTTCACTTTCTCGGTAAAGAGGACAAACCGCTCGCAGCTGTTAATCTTTTAAAA CAAATGAGAGAAACTGGTATAGAGCCAACTGTGCTTCATTACACCACGTTGATAGATGGATTGAGCAGAGCAGGAAATCT GCATGCTTGCAAACATTTTTTTGATGAAATGATAAAGAACGGGTGCATGCCAGATGTGGTGGCTTATACTGTAATGATAA CAGGATATGTAGTTGCTGGTGAACTTGAGAAAGCACAGGAAATGTTTCATGAGATGATTTCTAAAGAACAAGTGCCAAAT GTTTATACATACAATTCCATGATCCGGGGATTATGTATGGCAGGAAAATTTGATGAAGCATGCTCAATGCTCAAGGAAAT GGAGACCAAAGGTTGTAGTCCAAACTCTGTTGTCTATGTTTCACTACTGAGTTGTTTGCAGAATGCTGGAAAGGTTGCTA ATGCTCGTGAAGTGATGAGACAGATGATGGAGAAGGGGAAGTATGCCCACTTGCTTTCAAGGTTCAAGGGGTATAAAACA TAG
CDS sequence (LotjaGi5g1v0300900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATTTGTTAGCCCGTTTAGGTCCAAAGATGGTCCATAGATTATCTCATTGTTTGATTATTTCGCGGCGATTATGCGA CCGTCCGTTTGGCGGTGATGGGTTTGAATGTGTTGAGGAGCCTTTGAAAAAACTAGGTTCAGATTATGATTCCTCTGTGG ATGAATGGTTCCAGTTGAATGAGGAGTCGAGCGGTAACCAAAAACCCTTTTCACTTCGAAAAGGGTTCTTAGAAAGTGTT AAGTTAGATGCTAAGAGAGTCCTTGAGATACTGAGACAAGATGGTCCTGGTCTTGATGCTAGGGTGGTTTTAGATGAGTT GCAGGTTAGGCCATCGGGGCTTCTTGTGAGGGAGGTTCTCGTTGGAATTTTGAAGAGCATTAATCATGAGAATAGGACTA GGTGTGCAAAGCTGGCCTACAAGTTTTTTGTGTGGTGTAGTCAGCAGGAGGCTTATCAGCACACTGCGAATGCGTATCAC TTGATTATGAATATATATGCTGAGTGTGAGGAGTATAAGGCGTTGTGGAGGTTGGTTGGTGAGATGATTGAGAAAGGGTT TCCGGCTACTGCTCGTACTTTCAATATTTTGATTCGTACTTGTGGTGAGGCAGGCTTGGCGAAGGATTTGGTGGAGACGT TCATAAAGTCGAAGACGTTCAACTATAGGCCTTTTAAGCACTCCTACAATGCAATCCTACACAGTCTTCTAGTTTTAAAC CAGTACAAGTTGATTGAGTGGGTTTATCAACAGATGCTGCTTGATGGTTTTTCCTCAGATATTTTAACTTACAATATTGT CATGTATGCCAAGTACAGACTTGGGAAGTTGGACCAGTTCCAGATACTGTTTAAAGAGATGGGCAGAAATGGATTTTCTC CAGATTTTCATACCTACAACCTCCTTCTTCACTTTCTCGGTAAAGAGGACAAACCGCTCGCAGCTGTTAATCTTTTAAAA CAAATGAGAGAAACTGGTATAGAGCCAACTGTGCTTCATTACACCACGTTGATAGATGGATTGAGCAGAGCAGGAAATCT GCATGCTTGCAAACATTTTTTTGATGAAATGATAAAGAACGGGTGCATGCCAGATGTGGTGGCTTATACTGTAATGATAA CAGGATATGTAGTTGCTGGAAAATTTGATGAAGCATGCTCAATGCTCAAGGAAATGGAGACCAAAGGTTGTAGTCCAAAC TCTGTTGTCTATGTTTCACTACTGAGTTGTTTGCAGAATGCTGGAAAGGTTGCTAATGCTCGTGAAGTGATGAGACAGAT GATGGAGAAGGGGAAGTATGCCCACTTGCTTTCAAGGTTCAAGGGGTATAAAACATAG
Protein sequence (LotjaGi5g1v0300900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNLLARLGPKMVHRLSHCLIISRRLCDRPFGGDGFECVEEPLKKLGSDYDSSVDEWFQLNEESSGNQKPFSLRKGFLESV KLDAKRVLEILRQDGPGLDARVVLDELQVRPSGLLVREVLVGILKSINHENRTRCAKLAYKFFVWCSQQEAYQHTANAYH LIMNIYAECEEYKALWRLVGEMIEKGFPATARTFNILIRTCGEAGLAKDLVETFIKSKTFNYRPFKHSYNAILHSLLVLN QYKLIEWVYQQMLLDGFSSDILTYNIVMYAKYRLGKLDQFQILFKEMGRNGFSPDFHTYNLLLHFLGKEDKPLAAVNLLK QMRETGIEPTVLHYTTLIDGLSRAGNLHACKHFFDEMIKNGCMPDVVAYTVMITGYVVAGKFDEACSMLKEMETKGCSPN SVVYVSLLSCLQNAGKVANAREVMRQMMEKGKYAHLLSRFKGYKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 114 | 243 | 130 | 3.2E-16 | ||
| ProSiteProfiles | 155 | 189 | 35 | 8.298 | ||
| ProSiteProfiles | 190 | 224 | 35 | 7.936 | ||
| PANTHER | 197 | 433 | 237 | 4.8E-55 | – | |
| ProSiteProfiles | 225 | 259 | 35 | 6.884 | ||
| ProSiteProfiles | 260 | 294 | 35 | 10.271 | ||
| Pfam | 263 | 292 | 30 | 0.084 | ||
| Gene3D | 272 | 442 | 171 | 1.3E-46 | ||
| Pfam | 294 | 342 | 49 | 2.9E-9 | ||
| ProSiteProfiles | 295 | 329 | 35 | 11.038 | ||
| TIGRFAM | 297 | 331 | 35 | 2.8E-6 | ||
| ProSiteProfiles | 330 | 364 | 35 | 11.411 | ||
| TIGRFAM | 334 | 366 | 33 | 4.0E-9 | ||
| Pfam | 364 | 411 | 48 | 8.4E-13 | ||
| ProSiteProfiles | 365 | 399 | 35 | 13.055 | ||
| TIGRFAM | 367 | 401 | 35 | 2.1E-10 | ||
| ProSiteProfiles | 400 | 434 | 35 | 9.482 | ||
| TIGRFAM | 402 | 431 | 30 | 9.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0300900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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