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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0302100 |
| Transcript ID | LotjaGi5g1v0302100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Membrane steroid-binding protein; TAIR: AT5G52240.1 membrane steroid binding protein 1; Swiss-Prot: sp|Q9XFM6|MSBP1_ARATH Membrane steroid-binding protein 1; TrEMBL-Plants: tr|T2DNN1|T2DNN1_PHAVU Steroid binding protein; Found in the gene: LotjaGi5g1v0302100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:61900773..61905042) extracted from Lotus japonicus Gifu genome v1.2.
TGTTTGTTATGATTTCCAACCCACCAGAAAAAACTAAAAAGAAATTGAGGGACCAATTTGGATTATATTATTATAAAATC TAAAATCAACATTGGTGGTCTAGATGGTACTTGTTGCAACTCAATTCCTTCGTCCAAGAGTTCAAATCCTGCTGTAACCA AATTCCAACATAAAGACTAAGAACTTATTTTACATTTTTTATTTTTATCTCTATGCTTTGTGATGACAATAACAAATGAT ATAGGAGGTGTTTTAGGGGATGTAATCGGTGTTTGGATTGGAGATTTTTATGCTGGAACGTTTACGGGTGATGGTCTTCT TTCTGAGATTCAAGCTTTTCAGATGAGTCTTTTGTTAGTCTGGAGGGGGAATTTTCAACGGGTTGTGTGGCATAGGTTGC GGAAGAAGTATAATTACCATTTGTACAGTAGTGCTATGTTGGATTAGCACTTCCTTCTTGTGCGTGACTAAGAAATCTTC ACGTGCTTCATTGTTCTAATGAACCAGCGGATTGCCTTGCCGGACTTGGGGCAGAACTGCAATGTTTGTTGACAGAGTCA GATTCATCACCTGCTCCTATTTTCCCTTTTATGGTCCCTGATATATTAGTTTTGTAGTTTCTTTTTCATTACCTCTCATT CATTAAAAAAATGGTTATATAGATATTTTATTTACCAATTATTATATTTATCAAGTCAAATAAATAAATAAAATTTATAA GCAAGTCAAATAAATAAAAAAATAAAATATAGAGGAAACAAATTCTAAATAGAGTTTAATTTTGATGCATCGACGGTGTA CCAATCAGATTTCAAAACAGAGATTTTCTCACATCCTTAAAATCTGATTGGTTGACGGTGTAAAAAAACTTCGGTGCATC AAACATTTTCTCTTCTAAATAACCTTTGAGTTGTTCACATTTCAGTTTTCACAACCTCATCCCATTCTCTGTCTTCTACG TTGTTTCTCTCTCTAACACAAACACACTGATAGATATGGCGGTGCAACAGTGGGAGACCCTAAAGGAGGCCATCGTGGCC TACACCGGCCTATCTCCGGCCACCTTCTTCACAGCCTTAGCACTTGTCTTCGCTATTTACTACGTCGTCTCTGGTCTCTT CGGTTCCTCCCCCGACCACAACCGCCACCAGCACCGCCACATCGAAGAGGAGGAGCTGCCGCCTCTACGCCCGCCGGTTC AGCTCGGAGAGATCACCGAGGAGGAGCTCAAGGCCTACGACGGCTCCGATCCTGCCAAGCCCTTGCTCATGGCCATCAAG GCTCAGATCTATGATGTGTCTCAGAGCAGGTGTAACTAGCATACTACCCCTCAACTTGATTCTCTGTGTTATCTTTGTGC TCCATGCTTATTTTTGGGTTCTGGGTATTCTTTATTTTGTGTTGAATCTTTGTGTTAGCTTCCAAGTTGGGATTTTTTGA GGTTCCTGATTTTTGGGTATTTAGCATATGTTATCAGTTTCTCTTGTAAAATCTTTCCAGTTCCTTTTATGCTTGTGTTT TTGTGATTTTTCTGGTGCCCTTTTTTTGGAGATAGTGATTCAATTTGATTTTTTTTAGATCAGCTTTTTCCTTTTGTTAA CTTTTGTGTGTCTCTTTACTCTTTAGTATGATTATTTTTGTTGCTCATGTGACTTGTGATGAGAAGAGGATATGCTTCTC ATGTTCTTAAGTCTGTGGTTTGAGTAGAAAATGTGAAGGTGGGAATTGAATGGTTGAACACAGGATTCATATTAAGTTTG GTTGTGTTCAAGTGAAGCTCTCTTTCACTTTTCAATGCTCCATTGTCCCTTTTCTCAACCCCATCTACTTGGTTGTGTAG GTGGAAAGTAGACAATAGACACTGGAGAATGGAAATGTTTTTGAATTATAGTTGTGACAATGAGCTGAAACATGTTCATT TAGTTTTTTTTCTTCTTATGTTTTTGTTGTGTCAATGATTTTCATTTTAATTTTGTTACCTTCTCACTCTTAGCCTGCTC AACCAAGTTGACCCTTAGTCAGTAGTTTTTCCTTAGCTGAAAGAATGTCACTGTTATTGTGCCTCTGCGTTTCTGTGCAC TTCCCAACTATGTTAACTATAGTTTTGAACTTTTGATGCATCTCAAAATAGACAAAATATAGCACTCATATGAGCCTTAT CATGAATGGGCTAAATTTTTGTGTTGGATGCTATTATGAAGATCTGAGTAATGTAATATCAATCATTTTCTTCCTTTGTC GGAGCAGAATTACTCTCTAGAGCCTGTAAATGTTGGATTTGTGTGCATATTTAGTTTTACCTGGAAGTAATGTTTTGTGG TCATTTGTAAAGAAGTCGAGTTGACTTGGACTATCCCATCTATTATATAAAATCAAGTTGATCTATACGGTAGGATTTTC ACACAATTTTTATGCAGTGTATATCATGATGTAAGTCTCTGGTGTAAGGATTAGGTGGATATTCTGGTCTATGGTTTGTC TAAATACAAATTCATATCTCCTGTTTTCTGTTTCTAGACACAGTCAATTTTAATTTTAGTCTGGTCATTGCAATCTAACT GCTTATATTTTCCTCTGAAATCAACATTTTTTAGACCCCTTTATTACCCAATGAGCAGAATCTTTTGTCCCTTTGGTGTT TTTTTCAGTTTTGATTAGGATCAGTTAGTAAGTTAACACTTGTTAGTTGTTGAAGTTTAGTTAGGAAGGTTAGTAAAGTT AGTGGCTGTACATATACTTTAAACTCGAGTGATTAATGTGAAATTCAATTTTTATCTTTCAATAGTTCATAACATTTTTT GTTGTAATGTCTGCTTGGTATGTTCCAATCCATGTTTTTACTTGAGAACACAGTTGTTCTCTCGGTTATGCAAGCATGTT GTTATTTGTTTGTTGATTTTTTTATTAACGTCTTACTTTTCTCACATGTAAATTTGTCTTCCAGGATGTTTTATGGACCC GGTGGACCTTATGCTTTATTTGCTGGCAAGGATGCTAGCAGAGCTTTAGCAAAGATGTCTTTTGAAGAGAAAGATCTCAC TGGGGATATTTCTGGTCTTGGCCCATTTGAGCTCGAGGCCTTACAGGACTGGGAATACAAATTTTCAGAGAAGTATGTAA AAGTTGGAACTGTCAAATCAAATGTTCCGGTGTCTGAAACAGAATCAACTGGCGAACCATCAGAGTCTACTCCCCGTGAT GTTGATGCTGCTAAGCCTGCTGAAAATGGCCCATCAGAAACTGCTGCCGTTAAAAGCGATGAAAATGTTGATGTCAATAA AGATTAATTTGTTGGCTGTCTCATAAATACTGTTGGGGAAAAAATGAAGAAGATTAATAGCTGCTGAAAACACTAAGCCA ATGTCAGGGCAGGTTTCTTACTTTGTAGTGTGATTTTCATTTATCTAGGTTTCACTTTTCTACCTATGTTTTGAGTACAC TATAGAATGATTGTCCTTTTTTTCCTTGCCGTGTTCGTAATACGGTGGTGGTCCCTCTCAATAAATGACTTTTCTGGGAT TCGATTTTGTGACTCCACTCTTAAGGGGATTTAGCTTGCCTAGTACTGAATCAACACCCGGTTGGTAAAACAATTGTCTT TTAATTAATATAATAAAAATAAATGCAACAAACAAGTTAAAATTTGAAAGTTTCTTAACATTTGTATCACTTTGGAGTAA TTTGCTCCCTAGATCTTGATCTCTTTGAAGCATTAGACTTCACCACACACTGGCATTGCTAGACACACTACAATAGTGAG TGGTTGAGCTTCATGTTGATGGCAATCGGCTCTCAAACTGCAATTGCTGAGCTTGTAGAGGTAGAGATGAGTCTTCTCAA TGTTTAGGAATTAGGGCATAGCGAAGTTACTTGTGTGTCAGATTGTAGGGATGTTGTGGATCCACTTAGAAACAATGTTG ATGTCTGTAATCTCTTGTAGAGGAATGATATTGTGAGGGCCAGGGATCTGGTGAGTTGGGATTAAAGTGTAAGTTTTTTA CATGTTTTCCATGAGCAGAATAGTGTAATTAATTTAACTCGTCAAGCATCATGGAAGGAGTCTCCTATGCTCATTTCAAA CTTTTCCCCTTCTTTTGTTATTTGTAGTTTTTGTTTAGACTTTCTTACATGATTGTTTTGTTTGTCTTTCAGTTTTCAAA GTGTAACAAAAAATTACAATTTAGATTTGTGGTTATTGGGAGTCACAGATAGTAATTTTATTAAAGTTTGTCATATAGTG TGAAACATCAACCTTCATTTTAAACGTCAT
CDS sequence (LotjaGi5g1v0302100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTGCAACAGTGGGAGACCCTAAAGGAGGCCATCGTGGCCTACACCGGCCTATCTCCGGCCACCTTCTTCACAGC CTTAGCACTTGTCTTCGCTATTTACTACGTCGTCTCTGGTCTCTTCGGTTCCTCCCCCGACCACAACCGCCACCAGCACC GCCACATCGAAGAGGAGGAGCTGCCGCCTCTACGCCCGCCGGTTCAGCTCGGAGAGATCACCGAGGAGGAGCTCAAGGCC TACGACGGCTCCGATCCTGCCAAGCCCTTGCTCATGGCCATCAAGGCTCAGATCTATGATGTGTCTCAGAGCAGGATGTT TTATGGACCCGGTGGACCTTATGCTTTATTTGCTGGCAAGGATGCTAGCAGAGCTTTAGCAAAGATGTCTTTTGAAGAGA AAGATCTCACTGGGGATATTTCTGGTCTTGGCCCATTTGAGCTCGAGGCCTTACAGGACTGGGAATACAAATTTTCAGAG AAGTATGTAAAAGTTGGAACTGTCAAATCAAATGTTCCGGTGTCTGAAACAGAATCAACTGGCGAACCATCAGAGTCTAC TCCCCGTGATGTTGATGCTGCTAAGCCTGCTGAAAATGGCCCATCAGAAACTGCTGCCGTTAAAAGCGATGAAAATGTTG ATGTCAATAAAGATTAA
Protein sequence (LotjaGi5g1v0302100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVQQWETLKEAIVAYTGLSPATFFTALALVFAIYYVVSGLFGSSPDHNRHQHRHIEEEELPPLRPPVQLGEITEEELKA YDGSDPAKPLLMAIKAQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFELEALQDWEYKFSE KYVKVGTVKSNVPVSETESTGEPSESTPRDVDAAKPAENGPSETAAVKSDENVDVNKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 6 | 209 | 204 | 3.0E-96 | – | |
| PANTHER | 6 | 209 | 204 | 3.0E-96 | – | |
| Phobius | 12 | 38 | 27 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 39 | 218 | 180 | - | – | |
| SUPERFAMILY | 64 | 169 | 106 | 3.01E-27 | ||
| Gene3D | 71 | 169 | 99 | 2.9E-35 | ||
| SMART | 73 | 169 | 97 | 7.3E-22 | ||
| Pfam | 74 | 168 | 95 | 2.6E-13 | ||
| MobiDBLite | 171 | 218 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0302100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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