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LotjaGi5g1v0305100.2

Overview

Field Value
Gene ID LotjaGi5g1v0305100
Transcript ID LotjaGi5g1v0305100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Kinase family protein; TAIR: AT1G12580.1 phosphoenolpyruvate carboxylase-related kinase 1; Swiss-Prot: sp|Q06850|CDPK1_ARATH Calcium-dependent protein kinase 1; TrEMBL-Plants: tr|A0A151U6K5|A0A151U6K5_CAJCA Calcium-dependent protein kinase 4; Found in the gene: LotjaGi5g1v0305100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:62327490..62328551) extracted from Lotus japonicus Gifu genome v1.2.

AAAATTGTTATGGCTGTTGCTGGCAACAGCAGTGGCGAACCTTCAACTTCATACACTTGTTACAAAGAAGCAAGGTTGAC TGAAACCATATTAGACACGAAACAAACTTCTAATTTAAAAGATCGGTATGTTCTTGGGGAGCAGCTGGGTTGGGGGCAGT TTGGTGTCATAAGAGTATGTTCTGACAAACTGACCGGAGAGGTCTTCGCGTGCAAATCAATTGCTAAAGATAGGTTGGTT ACTTCGGATGATATGCAGAGTGTTAAACTTGAGATTGAGATAATGGCCAAGTTATCCGGGCACCCAAATGTTGTAGATCT CAAGGCTGTTTATGAAGAGGAACATCATGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGAGAGCTATTTCACCTGTTAG AGAAGCAAGGAAGGTTTTCTGAATATGAAGGCAAGATTCTCTTTAGGCATCTCATGCAGATGGTTTCGTATTGTCATGAA AATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGTTACTAGATCCTCCTCATCTCCAATTAAACTGGC AGACTTTGGGCTTGCAACCTACATCAAGCCTGGTACTTCCTTTCTTTGATTCCTTTAATCTTCTTTGCAATTTCCATTTC TCCACTGAAAAATGACTGGTTTTGATCTTCAAATATTGGGTTTGTTTAAGCAGGACAGAGTTTGCATGGATTAGTTGGGA GTCCATTTTATATAGCTCCAGAGGTACTGAGAGGTGCATATAACCAGGCTGCTGATATTTGGAGTGCAGGGGTTATTCTT TACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAGTCACGAATTTTTGAAGCTGTCAAGGCTGCTGATTT GAGGTTCCCGTCTGAACCTTGGGATCACATTAGTGAATCTGCTAAGGATTTGATTAGGGGAATGCTCTGCACAGAACCTT CTCTAAGGCTAACTGCTCAGGAGGTCTTGAGTAAGTTCACTCACTTCACTGTGTTTTTCTTTTGCTGTTAATGTGTATCT ACTGAAGTCTGAAGCCATTTGA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0305100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTGTTGCTGGCAACAGCAGTGGCGAACCTTCAACTTCATACACTTGTTACAAAGAAGCAAGGTTGACTGAAACCAT ATTAGACACGAAACAAACTTCTAATTTAAAAGATCGGTATGTTCTTGGGGAGCAGCTGGGTTGGGGGCAGTTTGGTGTCA TAAGAGTATGTTCTGACAAACTGACCGGAGAGGTCTTCGCGTGCAAATCAATTGCTAAAGATAGGTTGGTTACTTCGGAT GATATGCAGAGTGTTAAACTTGAGATTGAGATAATGGCCAAGTTATCCGGGCACCCAAATGTTGTAGATCTCAAGGCTGT TTATGAAGAGGAACATCATGTTCATTTGGTGATGGAGCTTTGTGCTGGAGGAGAGCTATTTCACCTGTTAGAGAAGCAAG GAAGGTTTTCTGAATATGAAGGCAAGATTCTCTTTAGGCATCTCATGCAGATGGTTTCGTATTGTCATGAAAATGGGGTT GTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGTTACTAGATCCTCCTCATCTCCAATTAAACTGGCAGACTTTGG GCTTGCAACCTACATCAAGCCTGGACAGAGTTTGCATGGATTAGTTGGGAGTCCATTTTATATAGCTCCAGAGGTACTGA GAGGTGCATATAACCAGGCTGCTGATATTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTT TGGGGAAAGACAAAGTCACGAATTTTTGAAGCTGTCAAGGCTGCTGATTTGAGGTTCCCGTCTGAACCTTGGGATCACAT TAGTGAATCTGCTAAGGATTTGATTAGGGGAATGCTCTGCACAGAACCTTCTCTAAGGCTAACTGCTCAGGAGGTCTTGA GTAAGTTCACTCACTTCACTGTGTTTTTCTTTTGCTGTTAA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0305100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAVAGNSSGEPSTSYTCYKEARLTETILDTKQTSNLKDRYVLGEQLGWGQFGVIRVCSDKLTGEVFACKSIAKDRLVTSD DMQSVKLEIEIMAKLSGHPNVVDLKAVYEEEHHVHLVMELCAGGELFHLLEKQGRFSEYEGKILFRHLMQMVSYCHENGV VHRDLKPENILLVTRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLRGAYNQAADIWSAGVILYILLSGMPPF WGKTKSRIFEAVKAADLRFPSEPWDHISESAKDLIRGMLCTEPSLRLTAQEVLSKFTHFTVFFFCC
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
NON_CYTOPLASMIC_DOMAIN
1 222 222 - –
PANTHER
PTHR24349
6 294 289 2.4E-185 –
PANTHER
PTHR24349:SF290
6 294 289 2.4E-185 –
SUPERFAMILY
SSF56112
37 294 258 8.09E-85
IPR011009
CDD
cd05117
39 294 256 4.69144E-134 –
Pfam
PF00069
40 294 255 7.0E-71
IPR000719
ProSiteProfiles
PS50011
40 301 262 49.686
IPR000719
SMART
SM00220
40 300 261 1.5E-93
IPR000719
Gene3D
G3DSA:3.30.200.20
40 123 84 2.4E-100 –
ProSitePatterns
PS00107
46 73 28 -
IPR017441
Gene3D
G3DSA:1.10.510.10
124 294 171 2.4E-100 –
ProSitePatterns
PS00108
160 172 13 -
IPR008271
Phobius
TRANSMEMBRANE
223 241 19 - –
Phobius
CYTOPLASMIC_DOMAIN
242 306 65 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004672
Molecular function Protein kinase activity Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006468
Biological process Protein phosphorylation The process of introducing a phosphate group on to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0305100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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