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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0306300 |
| Transcript ID | LotjaGi5g1v0306300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0306300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62424415..62428269) extracted from Lotus japonicus Gifu genome v1.2.
AGCAAAAAATAAAAAGAAAAAGAAAAAGGGGTGGATACAATTACAAGCTAAGAAAAAACACACCACAACCACATAACAAA ACACCAAGTCACAGGAAAGAAACAACAGCCACAGCCACAGCCACAGCCACAGCCACCACCCAATTGAATTGATGATTAAC AAACTGAAGGCTCAGACTCGCTCGCTCGCTCCCTCCCTCCCCTGCAACGCTGCGTTTTGCGTCCGCCGCCGTTCCTCCAG TTCTCTCCCCCGGCACATGGAGGTAAATCGGACCCTCTTCTTCAGTTGTTAGTAATTATTTGATCACACTCGTAAACCTA AACCTAAGAATTGCTTTGAATTTTCTGTTGTATTTACTTATTTTAGAAGCAAATGGGTGATGATTTGATTACTGAAATCC TGTTGAGGTTGCCGGTGAAGTCTCTTGTACGCTTCAAGGCTGTGTGTAAGTTTTGGCGGTCTCTCATATCCGATCCCCAG TTTGCAACATCACATTTTGAACGTGCTGCTCTTGCTCCGAGACTCGTGTTCATTACCCCTCATGGCATTCGAACCGTGGA GTTAGAGGAATCACTTCACCCTGATCATATTTCTGAACCAATAGATTATGACTTTTCATCTCCCCATGATGATTATAATT TTAAGAATCCCTGCCCTTCGATTCTAGGTTCGTGTAGAGGCTTTCTGCTAATGAGATGTGATCGAGGTACAAGTCTCTAT CTGTGGAATCCATCCACACATGTCCACAAACCGATACCTTTATCTCTTGTTGACGACACCAATGTTATTAATCATGCATA TGGATTTGGTTACCATTCATCAAAAGATGACTACTTGGTGGTCAGAGTGTCTATTACAGAAACATCCTTATCAGATGTGC AGTTTTTCTCATTCAGAGCTAATATGTGGAAATATGCTGAGAGTGTTGATTTTCCTTCTTCCTTTACCTCTACCTCTACT CAGGGTGTTGATTTACCTACCTTTACCAATATTGAACTTTGTGTTGGGTTGCTCTTCAACGAGGCCATTCACTGGGTGGG TAGCAACTGGGTGGCTGGTAGAACAACGTTTTTTATCATTGCCTTTGATTTAATGGAAAAGAGACTTTTAGAGATACCCC GGCCTGTTGATCTTTATGCCCATGATTTTTTGTGTTTTACTTTGTGGGTGCATCGAGGATTTTTTAGTCTATCGGTTGTG CGGAGAGATACAATTGAAATATGGGTTATGAAGAAATACAAAGTACAATCATCTTGGGCTAAGACTCTTGTTATATCTTT GAACCACCTTTACCCATTATGCTCTACAAAAGGGGGTGATATTGTTATGTTATCTGGACTAAAACTGACAAAGTATAGTG ATGAAGGAGTACAAGGAGAACAACAACTAGAGTGCATCAATTTTGGTACTCTAAATTCAGCAGTGCCCTTGTATACAGAG TCTATGCTTTCACTCCCTGATGTATGTTACTGAGTGAAATTATGTTTAATGAAACTGCCAGCAAACATAATGAGAGTCTG TATGAAAGTATGTTTGAGGGCACTAGTTATGATATCCTAATAGTATGTGCTTTCACTCCTTGCTCCTGGCATGGCAGGAA CAAAGTTCAGAGGAAGGGCGAAATAGCTATTTGGTTAGATGCATTTAGACATTGTGGCTGGTGAGAAATGCTCTTGTGTT TCAAAATGGCGAGTTCTACACGGTAAGGAACCGGTTATGGAGTTGATCCAGCTTCGATCTTGGAACTGGGCCGGAGTAAA ATTGGATGGATTCTGCAGCTCACTATTGGAATGTAGAATGGATCCTATTCCATGTATTCATTCATTGCAAGAGTAGAAGG ACAAGAGGTTGGAGGAAGGCCTATGCAAAGTGTGGCTGTGTAGCAGGGCCTGAACATGGTTTAATTGCTGGGATATAACC TTTAATTAGCAGTGCTGCCATACTGATTTATGTTGATTTATGTAGTGTCTTGTGTTCGTGATGTTGTTAGTACATGACAA AGGTTTCCCTTAAGCTTGGCAGCATCTGACTTCATACACACGGTGTTGGGTTTCATTACTTCTTGGAGATTAGAGCCTAT ATGCAGCATATTGACTTGTCCCTAAAGGTCCTCTGTAGGAGCATGTGTGCTGTTGATGTGGGACTTGAATGTTGATATCC AATTTCTGGTTTTTCTTTGTGTGCAACTAGAATTTAGCATTTATCTTGGTAGACTAATCTTTCATTTGATTAGCTTCTTC CTCGTTGGGGCACAGCCTTGTGCTCCCATTAATTCATTTCATCTTATAAAATAAAAAAATAGGAGTTAGTACATGGACTT AGCATATTTTCTTCTATAACTTAACATCATCATTAGGTTTTCCCCTTTTTATTACGAGTATTCCCCATGATGCTATCATT GTGTTAGTGAATCTGATTCTTCAATTGTTTTAGCTTGAATTTGTGCAAGATATATAGATCCACATGTTTTGTGGAAATTT TCTATCTCGAGAACTAGTTTCCGCCCCGGAATGTAATTTTAAAAAATAGATTCCTAAAGGTTTAATTGCAACTTTGGTCC CTAACGTTTATCAATTCCATGATTTTAGTCTCCCACCTAATTTAATTACACAGATGGTCCTTGACTTTGCTGGCCGTCTG CAACGTTGGTCCTACCGTTTATTTGTTAATGGATGAGGTTTACGTGGATGGTCACTTAGCTAATTTGGAAGTCGAATTGG AGAGAGAAAGAGACCAGCAACTGATTCAACCTTCTTCCTCGCCTCCAGGGACTCGTTCTTTATCTCTTCCCTTTTCGCTC AATCTCAAGCTTCGAAACATCTTCCTCACGGTGCTTTGTTTTTTAAGGAGGAAGAAGGTAGAAGATGACCGTTGCAGGTC TCACGTGCAACTCACATGCTTCCCTCTCTCTTCAGTCCTTCTTTCTCTCTCCAATTGGACATCCATGTAAGCCTTCTCCG TTAACAAATAAACGACAGGACCAACGTTGCAGACAATCAGCAAAGTTAGTGACCATCAGTGTAATTAAATTAGGTGGGGG ACTAAAATCGTAGAATTGGTAAACGTCAGGACCAAAGTTGTAATTAAGCCATTCCTAAATCTAACTCATGAATGAAAAAT TTACATCCCTAGTTTCTGGAATATATTTTTCTAATTCCTGAAATCATGAACATGAAAAATTTCGAGGCAAATTGCTACTT GAAATTTTATTCAAGTTATATAATTTATAAACAAATTGTTACATGAAATTAGATTCAGAAATGAACTTGTTGCTTGAAAT TAGTAGATTCAGAAAAGAACTTGTTGCTTGAAATTAGTTTCAGGTTCATAACTTCAAAACATATAGTTACCTGAAATTAT AATCGGTGAGGTCATTGTTAAGTGAAATTAGATTATTCAGGAAGCTAGTACTAATGTTTATACTAATACTTACCTGAATC AAATTTTTAGAATCGTAACTTCGCACGAGTATTTTAGTAACACGGTGCAGGGATGTTGAAAACAGGTTAAGGGGATGATA ATATTAGTTTTATCCTTTATAATTTAACTAGTAGATTTATTTACCTATGCGATGCACACGTCATATTGAGTTTGTAACTA GCTGGACATTTAGATATAGTGGTGACACCTGAGCAAATGGGCCTAGCTAGGTGAAGGAAAATTCTAACTTAGCCCAACAT GAGACTCCATGACTACCACCACTCTAATTGGGCCAATACACAAGTCAATATTCTATCCTATCCAGTTACTGAAAACAGAG TTCAAAAAAAAAATGTTACTGAAAACTAGTTTACCAAATGATGTCAAAGTTTAGTTGGAATACTAAAATGTGAAGAGTAT ATTCCGGTTTCAAAA
CDS sequence (LotjaGi5g1v0306300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAACAAACTGAAGGCTCAGACTCGCTCGCTCGCTCCCTCCCTCCCCTGCAACGCTGCGTTTTGCGTCCGCCGCCG TTCCTCCAGTTCTCTCCCCCGGCACATGGAGAAGCAAATGGGTGATGATTTGATTACTGAAATCCTGTTGAGGTTGCCGG TGAAGTCTCTTGTACGCTTCAAGGCTGTGTGTAAGTTTTGGCGGTCTCTCATATCCGATCCCCAGTTTGCAACATCACAT TTTGAACGTGCTGCTCTTGCTCCGAGACTCGTGTTCATTACCCCTCATGGCATTCGAACCGTGGAGTTAGAGGAATCACT TCACCCTGATCATATTTCTGAACCAATAGATTATGACTTTTCATCTCCCCATGATGATTATAATTTTAAGAATCCCTGCC CTTCGATTCTAGGTTCGTGTAGAGGCTTTCTGCTAATGAGATGTGATCGAGGTACAAGTCTCTATCTGTGGAATCCATCC ACACATGTCCACAAACCGATACCTTTATCTCTTGTTGACGACACCAATGTTATTAATCATGCATATGGATTTGGTTACCA TTCATCAAAAGATGACTACTTGGTGGTCAGAGTGTCTATTACAGAAACATCCTTATCAGATGTGCAGTTTTTCTCATTCA GAGCTAATATGTGGAAATATGCTGAGAGTGTTGATTTTCCTTCTTCCTTTACCTCTACCTCTACTCAGGGTGTTGATTTA CCTACCTTTACCAATATTGAACTTTGTGTTGGGTTGCTCTTCAACGAGGCCATTCACTGGGTGGGTAGCAACTGGGTGGC TGGTAGAACAACGTTTTTTATCATTGCCTTTGATTTAATGGAAAAGAGACTTTTAGAGATACCCCGGCCTGTTGATCTTT ATGCCCATGATTTTTTGTGTTTTACTTTGTGGGTGCATCGAGGATTTTTTAGTCTATCGGTTGTGCGGAGAGATACAATT GAAATATGGGTTATGAAGAAATACAAAGTACAATCATCTTGGGCTAAGACTCTTGTTATATCTTTGAACCACCTTTACCC ATTATGCTCTACAAAAGGGGGTGATATTGTTATGTTATCTGGACTAAAACTGACAAAGTATAGTGATGAAGGAGTACAAG GAGAACAACAACTAGAGTGCATCAATTTTGGTACTCTAAATTCAGCAGTGCCCTTGTATACAGAGTCTATGCTTTCACTC CCTGATGTATGTTACTGA
Protein sequence (LotjaGi5g1v0306300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINKLKAQTRSLAPSLPCNAAFCVRRRSSSSLPRHMEKQMGDDLITEILLRLPVKSLVRFKAVCKFWRSLISDPQFATSH FERAALAPRLVFITPHGIRTVELEESLHPDHISEPIDYDFSSPHDDYNFKNPCPSILGSCRGFLLMRCDRGTSLYLWNPS THVHKPIPLSLVDDTNVINHAYGFGYHSSKDDYLVVRVSITETSLSDVQFFSFRANMWKYAESVDFPSSFTSTSTQGVDL PTFTNIELCVGLLFNEAIHWVGSNWVAGRTTFFIIAFDLMEKRLLEIPRPVDLYAHDFLCFTLWVHRGFFSLSVVRRDTI EIWVMKKYKVQSSWAKTLVISLNHLYPLCSTKGGDIVMLSGLKLTKYSDEGVQGEQQLECINFGTLNSAVPLYTESMLSL PDVCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 398 | 363 | 7.4E-84 | – | |
| PANTHER | 36 | 398 | 363 | 7.4E-84 | – | |
| Gene3D | 38 | 76 | 39 | 5.5E-9 | – | |
| SMART | 40 | 80 | 41 | 1.4E-5 | ||
| SUPERFAMILY | 40 | 99 | 60 | 2.75E-14 | ||
| Pfam | 42 | 76 | 35 | 1.9E-7 | ||
| TIGRFAM | 139 | 347 | 209 | 3.9E-19 | ||
| Pfam | 253 | 351 | 99 | 7.1E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0306300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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