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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0310300 |
| Transcript ID | LotjaGi5g1v0310300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock transcription factor; TAIR: AT3G22830.1 heat shock transcription factor A6B; Swiss-Prot: sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b; TrEMBL-Plants: tr|I1NGK0|I1NGK0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0310300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62843551..62846893) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGTCATAATATGAATGTTTTTTGCTCAAATAAGATTATGCTTCTAAAGGAGAATACCTAAGAAAAAAAAAAGACTAA TCAACACTTAATGAAAAATATGTCTACATTAAGTTTGTTATTGTATGTAAGTGAAAAAAGAAAAGGAGAACATAGATAGG CATTAGACAGATAATAAATTGAACAAAGCTCATGGTGCACCTGCTTGTGCTTCCTCCATATCCTTCATTCCTAACACTCC ATCCTTCTCCATACCATAATAATAATAATCACAACCCTCTAAGCTCACCCTTCATCTACCTCTCTCTTCAAGTTCTTTTC CATGAACTATTACTTCTTTAGAGGAAGGAACTGGATCAGATCTTCATTTGAACTCATCAACCTACACAGTTTCACCTGAC ATTATTCAAATATCCTCTACCAAAACAGTTGAGATCAGGAAAGCCTCACAACCTCAAAGTCAAAGCCACCACCTCCCAGA TCAAAGCTCCATATGAATCCTCAGGCTCAGGGACGAATGAAGAAAGAGGAGTTTGTAGGACAAAGTTCTTCCTATTCTGG TGGCGTTCCTCCCCAACCAATGGAGTGTCTTCAAGAAACTGGTCCTCCACCTTTCCTCACAAAAACATACGACATAGTTG ATGACCCTTCCACAAATCATATAATTTCATGGAGCACAGGGAATAACAGCTTCGTAGTGTGGAACCCACAGGCCTTTTCC ATAAGCCTTCTCCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGTATGTCAGTA ACTTCTGATCTGTGCTGTTTTCTTTATATATGGATTGCATCTTGATGTTGTCATGAGTAATGATAACCTTATCTTCATTG AAGTTCATGAAGCTGCTGGAGTGTGTTAGTATTCTTTTACTTATCATAGTTGGTTGGTCGAATTTTATCCTATAGTAATG GGTTTCCCTATTGACATTTTGTTAATCTGATGTCTTGAGTAGGAAATAGTAGAAAATTTAGAATATAAATTGAATTTAGA ATATAAATTGATACATGGTTCAGTGTTGATTTGATCTAATTTTTTATCGAGCTTAATAGCGTAGGGTGATCCATATAGTC AACCTCACTTAGTGGGATAAGACTTGTTTTGTTGTTGTTCAGTGTTGATTTGCGCTTCTATATCATCTGCAATGATGCTA TATATGCAAATTGTTGTTGTTAAGTGTTGAGATCAGTTTCTCTTTCCTCAGAATCAATTATGTACTATGAAGCTACAACT TCCTCTTATAGTTGATTTTGGCTTTAGAATCAATTGTAAAACTAATTCCAAACATGCATTAAGACTTGTATGTATATGTA AACAAGATGTGTATCCTTTATTCTGGTTTATCCTTTCTCAAACCATTACCACATTGGGATTTTATGGACTTGGAAATGAA GGAGGAATTTGATATTGTAGGGGTTTAAGAAGGTTGATCCAGATAGGTGGGAGTTTGCCAATGAGATGTTTCTTAGAGGA CAGAAAGATCTTTTGAAGAATATTAGAAGGAGGAAAGCCAATCAATCTCAGGCAATGCAGCAAGCTCTAGACCCTTGTGT TGAGGTGGGGTGGTTCGGATTAGACGGAGAAGTTGATCGGTTAAGGCGTGACCGGCAAGTTCTCATGGTGGAGTTGGTGA AACTCAGACAACAGCAACAGAGTACTAGAGCTCACATTCAAGCAATGGAAGGAAGGATTAAAAGGACAGAGCAGAAACAG CAACAGATGATGAGTTTCTTGGCAAGAGCAGTGCAAAATCCCAATTTCTTGCAGCAATTAGCTCAACAAAAGGAATGGAG AAAGGAATCGGAGGAGGCAGTTTCCAAGAAGAGAAGGCGACCTATTGATCAAGGGCCATGTGAATTAGAACATGCTGAAG ATAGCTCTGAATTTGTTAAACTTGAACAATCACATGAATACAGTGACAAATTAGTAGAGTTTGAGGTATCTGACTTGGAT TATGCTTTGAATATTGAGGGACAATGTGGAAGCCAGAACATGATGAACGTGGAGCAAGATCATGTTCATCTTAGAAGAAG TAGTGATCAAAACATTGATGAAGTGTTTTGGCAAGATTTGCTTGATGAGGGTATTGGTGATCAACATGTGCTAGATGTTG AAGATGTAGATGTATTGGCTGAGCAACTTGGTTATTTGGCCTCTGGTCCAAATAGGAGGCTGTCATAGGCTGCAATTTTT CTACCTTGAGAAGGATGAAAATTTCCGGTCTTGATTTGGTGTCTCATTTCCTATCTCACCAATTAACCTGTACCATGTAA GTGTGTTATAGTCTTACATGGATAATTTTTAAATGATATGGTATAATTTGATTGGTGGAACAGGTAAGAGAATATCAAAT GGGGATTGAAGATTTCAGTCAAATATTTAGTTGGGTGGTGGTTGTACTTGTATCTCCTTCCTTCGTTATACTTTTGTGAC CAGTTTCATGTTGATATATACTTGATTCTCTAGATACTAAACTCCAACTCTTGTGATAGTGTCATGGCCCATTTTTAAAG CATGAATAGATGCAAGTACACTGGTGGTTTGTTCTCATGGTTTTCTCCATTATTCAATTTCAAAATTAACTTCATATCCA AATTTCAATATAATATCCCATGATCTCTCTGAAAGTTCTACATTGTTACATGCCATTTGTGTTTTCAATTTCAACACTTG AGAAGGTGTCAAACAATCTTTCAGAAGGGTCTCTTGGTAGGGCATTCTACCACAGACCACCAAATTGGTGGTATACTTGT ACAATGTTTGTAATTTTTTGAGTTTATTTATAAGTACGTGTAACAAATAGGTGGTTAGCAACTTAGGATAGTTATAGCAT ACAGTTAGTGAAAGTCTAGTTTAACTTTTTTTTATGAGCAATTGCATTCAAAGCTAGCACACGGGTGCTAGAATTCGAAT AAAAAATAAAAGTAAAATGACATTAAATGGAAAGATAGAGATGCCTCAACTCAATACAAGAGAAAATTAAATGAGAACAA CAGCTATATTTCAAATAAAGAGAAAGAAAATTAGTAGAAGGAAGGGTAGAAATTAACCCAAAAAACCATGAGCTGAGCAA CCTCCTAAACCACTAGTTTGGAGGTGAGTATTGTTTTATTATATGTAGAATGTTTTGACTTTATTTTTATTTAAAGTGAG ATTTATCAACACATCCTTTTAATATGTCCACGACTAGACATATGGAGCCTGGGATTTGAAGGAATGAATATTTGTGGGTG ATTTATGTATGAGTAATATTAGAATTTGGTAGAGTTAACTCTAGTTAACTTAAAAAGTGTTAA
CDS sequence (LotjaGi5g1v0310300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCCTCAGGCTCAGGGACGAATGAAGAAAGAGGAGTTTGTAGGACAAAGTTCTTCCTATTCTGGTGGCGTTCCTCC CCAACCAATGGAGTGTCTTCAAGAAACTGGTCCTCCACCTTTCCTCACAAAAACATACGACATAGTTGATGACCCTTCCA CAAATCATATAATTTCATGGAGCACAGGGAATAACAGCTTCGTAGTGTGGAACCCACAGGCCTTTTCCATAAGCCTTCTC CCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAGAAGGTTGATCCAGA TAGGTGGGAGTTTGCCAATGAGATGTTTCTTAGAGGACAGAAAGATCTTTTGAAGAATATTAGAAGGAGGAAAGCCAATC AATCTCAGGCAATGCAGCAAGCTCTAGACCCTTGTGTTGAGGTGGGGTGGTTCGGATTAGACGGAGAAGTTGATCGGTTA AGGCGTGACCGGCAAGTTCTCATGGTGGAGTTGGTGAAACTCAGACAACAGCAACAGAGTACTAGAGCTCACATTCAAGC AATGGAAGGAAGGATTAAAAGGACAGAGCAGAAACAGCAACAGATGATGAGTTTCTTGGCAAGAGCAGTGCAAAATCCCA ATTTCTTGCAGCAATTAGCTCAACAAAAGGAATGGAGAAAGGAATCGGAGGAGGCAGTTTCCAAGAAGAGAAGGCGACCT ATTGATCAAGGGCCATGTGAATTAGAACATGCTGAAGATAGCTCTGAATTTGTTAAACTTGAACAATCACATGAATACAG TGACAAATTAGTAGAGTTTGAGGTATCTGACTTGGATTATGCTTTGAATATTGAGGGACAATGTGGAAGCCAGAACATGA TGAACGTGGAGCAAGATCATGTTCATCTTAGAAGAAGTAGTGATCAAAACATTGATGAAGTGTTTTGGCAAGATTTGCTT GATGAGGGTATTGGTGATCAACATGTGCTAGATGTTGAAGATGTAGATGTATTGGCTGAGCAACTTGGTTATTTGGCCTC TGGTCCAAATAGGAGGCTGTCATAG
Protein sequence (LotjaGi5g1v0310300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPQAQGRMKKEEFVGQSSSYSGGVPPQPMECLQETGPPPFLTKTYDIVDDPSTNHIISWSTGNNSFVVWNPQAFSISLL PRFFKHNNFSSFVRQLNTYGFKKVDPDRWEFANEMFLRGQKDLLKNIRRRKANQSQAMQQALDPCVEVGWFGLDGEVDRL RRDRQVLMVELVKLRQQQQSTRAHIQAMEGRIKRTEQKQQQMMSFLARAVQNPNFLQQLAQQKEWRKESEEAVSKKRRRP IDQGPCELEHAEDSSEFVKLEQSHEYSDKLVEFEVSDLDYALNIEGQCGSQNMMNVEQDHVHLRRSSDQNIDEVFWQDLL DEGIGDQHVLDVEDVDVLAEQLGYLASGPNRRLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| PANTHER | 8 | 335 | 328 | 7.1E-155 | – | |
| PANTHER | 8 | 335 | 328 | 7.1E-155 | ||
| Gene3D | 33 | 132 | 100 | 2.8E-38 | ||
| SUPERFAMILY | 37 | 130 | 94 | 1.5E-36 | ||
| SMART | 37 | 130 | 94 | 1.2E-60 | ||
| Pfam | 41 | 130 | 90 | 9.0E-30 | ||
| PRINTS | 41 | 64 | 24 | 4.6E-19 | ||
| PRINTS | 79 | 91 | 13 | 4.6E-19 | ||
| ProSitePatterns | 80 | 104 | 25 | - | ||
| PRINTS | 92 | 104 | 13 | 4.6E-19 | ||
| Coils | 157 | 177 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi5g1v0310300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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