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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0310400 |
| Transcript ID | LotjaGi5g1v0310400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; TAIR: AT4G14710.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|F6HDT7|MTND2_VITVI 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2; TrEMBL-Plants: tr|I3SYE6|I3SYE6_LOTJA 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Found in the gene: LotjaGi5g1v0310400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62848457..62852560) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATCATTCTATCAAACACAATATTACTTCTTCTACAATCTTTGACAAATTTTTTTATCTTAAAAACAGAATCTAAAA AATATTTTTAAATTAAAAAAAGTGATAGGGAAAATGAAGGTCCAAGAAATATTTTTGACTTTTTGTGGTCAAAGGTGATG ATGAGGTTGAGAGGTTTATATAAATCGCGTGGACAATAAGCACAAGTCACAGATATCCGATCAAAAGAACCACCAACTGC ACCACCGAACCAACCTATCATCATGGTTTCTTCCGACAAGGTATTCCTCGTACTTTCTCGATTCTCATCATCGGAGCAAT TTTTGTTTTGTTCCAAAAAAACATGATTCCTTGTTCTGTTAATTGCATAGATTTTGTTGTGAATTAACAATTTGAATGAT CGTAGCCTAAGCTATTTGAATTCAACTGTGACCAATTTGTATGCATGTGGATGTGGATGTGGATGTGGATGAAGTTATTG ATCTTTTCATGATTTGTTTCTAATGAATTTGTTTAAGGATGAATCAGTAAGTTGGAAATTTGACTTCTGAGTTCTGACCC CTTGCTTGAGAATCTAATTGACCAAACAAGGGTTTTGAATTGATCCGGTCGCAGGTTTTTGATTCGTGGTAATGGTATAG CAACCGCTATTGCGGCCGCATCAACCTATCAACCTGCATTTCTGCAACATAACCGCGACCGCTTCCCCAATTTAAAACCC TAGGGAAAACAATTCAATTTTTTGGTTTTATAGGAATTTACCTGAGTCTGCATTGTTGTGTGATCAAAACCTGTCTCGTT ACTCTTCAGGACTCAGGAGAGACAGAACATGTTGCATCTATCAAATTTTGAATTCGGAGTCTATTGAAGAACTTGAAAGT TGTTGCATCTCATGTGTGAAATAGTGAATTCTTGATCATCTCGCATTGATAAATAGGTTGTGATGTTTTTTGCGAGAACT GGATGCTAACTGTCATTGTTCCTACTCGTAGATAACTTGTTTCTTTTTGCTAAATGTCCTATTGCAAGTGGGTATAAATT GAATGTTCCTGTTATGTTATTATTGCTGTTGTATGATGATATCTCTAGAGCCAATCATCTATCTGAAACAGATTATTTGT TTCCCAATTACTACTACATTCTTAATCATGGTAATGTGCTCAAATTGTTCTGTACTATTCCTATTGTTACTTTTTGGTTG TTGGGAGGTTGTATGAGCTCTCATTCAAAATTGAGCAGAAATAAGAGGAATCATTCTTTCAAATGTCATTTTTCACAGGA TCCCCGAGAGGAAGTCATTCAAGCCTGGTACATGGATGACAGTAATGAAGATCAAAGACTTCCCCATCACAGAGAACCCA AGGAGTTTGTCTCATTGGCTAAACTTGATGGTAATTTTCTCGTTGCATGTGTCAGTTATGTTTCTGATATGTACAAATTG TGACATTTATTCTCGCATCTGATCTTGGGCTTATCTTCACATTGCAGAAATCGGAGTCCTTAGTTGGAAATTAGATGCTG ATAACCATGAAACAGATCCAGATCTGAAAAAGATCTGTGAAGAACGTGGTTACACCTACAAGGTTTGTTATACTAATGTT TCATTATTAGCAATTTAGCATTTATACTTAACTTCCCCTCTACTCAGTAAATAAATTTGTGTACAGAAAAATTAACAATA TGCAAAAGTATGACTGTGTTCAGTTTTGTGTAACAATCAGAATCTTGTCATTCTGTCTGCATTTATGTTTGTTTAACATT TTGACCTGAGGCTCTCTTTCTGCAGGATGTTTGTGAGATCTGCCCTGAAAAGATGCCAAACTATGAAGCGAAGATCAAAA GCTTCTTTGAAGAGCATCTTCACATTGATGAGGAGATCCGCTATGCTGTTGCTGGAAGTGGTATGAGCAATTTTTTCCCC TTACTTTTATTTTCTTGCTATCTTGTAATGTGTGTTTGTTTTGGCGTTTATAGTCTTTACATAAGTTCATTTGCGTCCTT CCAATGCAATCACACCAAAGCATCTATGAGGACAACCCCAAATCAACCACACGCTAAATACTTCCTGTCTTTCTTTAGGT TATTTTGATGTCAGGGATCGCAATGATGCTTGGATTCGTGTATGGGTGAAGAAAGGAGGAATGATCATTTTACCTGCTGG AATGTATCATCGCTTTACACTAGATGAGACCAATTATATTAAGGTATTGATGCCATCTTTACAAAAGCATTATATCAATG AACTTCTCATTTTCCTGTCAGTTTGTCCCTTTTTGGGGAACTTTGACTCTTTAGGCCTTGAACTTGGTCATACTTTACTG CATTTCCCTGTGCCCCTTTTGAAAGGCTTTCTTGTGAGTCATATTTTTGTATTTTTTGAGTGACCGAAGCATCTGATTGC AAATTTTTTTGTTAGTTGTATTCTTGTATATGTGTTATGATGAAGGTGTATCTTGAGATATGACATATTTTATGCTTGTG TTTGTCATCTTTCAGCAATTGGATGTGCATTTTGCCATTTTCAATGTTTCTTTTTATCTTAAATAGAAGATTAGTCTAAC TCATAAGTGCGGTCTTACATGATTGTAAATATGCAGGCTTTGCGTTTCTTTGTTGGTGAACCAGTTTGGACTCCATACAA CCGTCCACATGATCATCTCCCTGCAAGGTATAATTTAACAAGTTCAGTAGCCTATGGGACAATCAGATAGGCTTTTTGTT GTGGTTCATATTGTGTTTTCAATGTGCAGAGAGGAATATATCAAGGCTTTTCTGGAAAAGGATGTTGCCAACAATGCTGT TGATGCTGCTGCATGAGAGTGAGATCTGGTTCTGCCTGATCGATAGTAGTGTGGGTTGAAAAGGACTAAGGTTTAAAAAC AATAATGGTCTGTTCAAATAAAATGACCGGCTTTATATGTTATGGTTTGTGTGTAATTAACCCCATAGCTGATGTTGTAT TCTATTTTGTCCGGTACTGTTTAAGGATCTGACTTAGAGGTATTATTATTGGAACTGGGTACAGCATAAACATATACTTT GCAAATAGTATAGAGATTAATTTCTATGTACTGACAGTGTAAAAAGTTTTACACAATCATTCAATCACAACTTTCCATTT CATATTTAAAATTTATTAAATTCAAAATTAACTATGAGCTAGCAAAATAGAGGGTTGTGATTGATTGATTGTGTAAAACT TATTTACACTGTCAATGCATAGAAATTAATCTCAATAGCATATTGATGTAGCACCTAAAATATCGATCATACTTGTAGCC TAGTTGTGAGTTTAGACTATTAGAATGTCGGATTTATAGGGGGCGAAAATTTAAGACAAACTAAAATTAATAATAACTAA TTGAAATAGACACTAAAACTTAAGGGGAGAATACAACATTTAAATACTATTATATGAAAATAAAATTCTCTTTGCGACTG CCCCATTTGTGGAGCACTTGGGTCCATCCCTGCACTCATGCAAGGTTGCAGTTCTTCCTTCTCGCTCAGCCGCCTTTGTG ATTGCTCATTTTGCTGTTAGTGAGATGAGACCAAGGTTGTACTTTTATCCTCCATGATGGCCACTCGAGATTGTGTCCTT CATCCCCTGCTCAGACAACGTGCGAAGCCGATTTTTCTAGCGGTGCCGCTCAACGCCGATTTTTCTAGCCGCGCCGAAGT TGAACCATTTTTCCTCATTTGTCAATGGTGACAAAGGACAGGGGTGAAGGCAAGAACCTAGTCAACCTATGTTGGGGTTA TTTTTAGCTAGGAGCAAGATTGATTATCTCCTCATACTTCTGCTTTCTTCTTTAGCTTAGTCTTGTCTTCATTTTATTCA TCCCTGTTATTAGTATGCGGTTCTGGAATTTGTGAACAGAGTAGAACATAGCATCACTATGTGGTTGTATCTATACTCTT AGCATATTTTACTTTCTTTGGTTTGGATTAAAAGTGTTCACAATCACCAAGTTAGAAGATAATTCAACATTCACATAGAA AGGGAAATAAAACGAGAGAGGCGAGGGTTTGACAGTGCTGGGGTGGTGGGAGGGTTTGAAGGCTGTTGTTTCATGGCTGC CTAATAATGTTACGGTGGCTGGAG
CDS sequence (LotjaGi5g1v0310400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTCTTCCGACAAGGATCCCCGAGAGGAAGTCATTCAAGCCTGGTACATGGATGACAGTAATGAAGATCAAAGACT TCCCCATCACAGAGAACCCAAGGAGTTTGTCTCATTGGCTAAACTTGATGAAATCGGAGTCCTTAGTTGGAAATTAGATG CTGATAACCATGAAACAGATCCAGATCTGAAAAAGATCTGTGAAGAACGTGGTTACACCTACAAGGATGTTTGTGAGATC TGCCCTGAAAAGATGCCAAACTATGAAGCGAAGATCAAAAGCTTCTTTGAAGAGCATCTTCACATTGATGAGGAGATCCG CTATGCTGTTGCTGGAAGTGGTTATTTTGATGTCAGGGATCGCAATGATGCTTGGATTCGTGTATGGGTGAAGAAAGGAG GAATGATCATTTTACCTGCTGGAATGTATCATCGCTTTACACTAGATGAGACCAATTATATTAAGGCTTTGCGTTTCTTT GTTGGTGAACCAGTTTGGACTCCATACAACCGTCCACATGATCATCTCCCTGCAAGAGAGGAATATATCAAGGCTTTTCT GGAAAAGGATGTTGCCAACAATGCTGTTGATGCTGCTGCATGA
Protein sequence (LotjaGi5g1v0310400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSSDKDPREEVIQAWYMDDSNEDQRLPHHREPKEFVSLAKLDEIGVLSWKLDADNHETDPDLKKICEERGYTYKDVCEI CPEKMPNYEAKIKSFFEEHLHIDEEIRYAVAGSGYFDVRDRNDAWIRVWVKKGGMIILPAGMYHRFTLDETNYIKALRFF VGEPVWTPYNRPHDHLPAREEYIKAFLEKDVANNAVDAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 2 | 189 | 188 | 6.6E-89 | ||
| PANTHER | 6 | 198 | 193 | 7.8E-104 | – | |
| PANTHER | 6 | 198 | 193 | 7.8E-104 | ||
| Hamap | 13 | 176 | 164 | 37.016 | ||
| Pfam | 14 | 168 | 155 | 4.1E-62 | ||
| SUPERFAMILY | 14 | 186 | 173 | 3.06E-52 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Acireductone dioxygenase [iron(II)-requiring] activity | Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O(2) = 4-methylthio-2-oxobutanoate + formate + H(+). | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Biological process | L-methionine salvage from methylthioadenosine | The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0310400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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