Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi5g1v0310400 |
Transcript ID | LotjaGi5g1v0310400.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; TAIR: AT4G14710.1 RmlC-like cupins superfamily protein; Swiss-Prot: sp|F6HDT7|MTND2_VITVI 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2; TrEMBL-Plants: tr|I3SYE6|I3SYE6_LOTJA 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase; Found in the gene: LotjaGi5g1v0310400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62849745..62851300) extracted from Lotus japonicus Gifu genome v1.2.
AAATGTCATTTTTCACAGGATCCCCGAGAGGAAGTCATTCAAGCCTGGTACATGGATGACAGTAATGAAGATCAAAGACT TCCCCATCACAGAGAACCCAAGGAGTTTGTCTCATTGGCTAAACTTGATGGTAATTTTCTCGTTGCATGTGTCAGTTATG TTTCTGATATGTACAAATTGTGACATTTATTCTCGCATCTGATCTTGGGCTTATCTTCACATTGCAGAAATCGGAGTCCT TAGTTGGAAATTAGATGCTGATAACCATGAAACAGATCCAGATCTGAAAAAGATCTGTGAAGAACGTGGTTACACCTACA AGGTTTGTTATACTAATGTTTCATTATTAGCAATTTAGCATTTATACTTAACTTCCCCTCTACTCAGTAAATAAATTTGT GTACAGAAAAATTAACAATATGCAAAAGTATGACTGTGTTCAGTTTTGTGTAACAATCAGAATCTTGTCATTCTGTCTGC ATTTATGTTTGTTTAACATTTTGACCTGAGGCTCTCTTTCTGCAGGATGTTTGTGAGATCTGCCCTGAAAAGATGCCAAA CTATGAAGCGAAGATCAAAAGCTTCTTTGAAGAGCATCTTCACATTGATGAGGAGATCCGCTATGCTGTTGCTGGAAGTG GTATGAGCAATTTTTTCCCCTTACTTTTATTTTCTTGCTATCTTGTAATGTGTGTTTGTTTTGGCGTTTATAGTCTTTAC ATAAGTTCATTTGCGTCCTTCCAATGCAATCACACCAAAGCATCTATGAGGACAACCCCAAATCAACCACACGCTAAATA CTTCCTGTCTTTCTTTAGGTTATTTTGATGTCAGGGATCGCAATGATGCTTGGATTCGTGTATGGGTGAAGAAAGGAGGA ATGATCATTTTACCTGCTGGAATGTATCATCGCTTTACACTAGATGAGACCAATTATATTAAGGTATTGATGCCATCTTT ACAAAAGCATTATATCAATGAACTTCTCATTTTCCTGTCAGTTTGTCCCTTTTTGGGGAACTTTGACTCTTTAGGCCTTG AACTTGGTCATACTTTACTGCATTTCCCTGTGCCCCTTTTGAAAGGCTTTCTTGTGAGTCATATTTTTGTATTTTTTGAG TGACCGAAGCATCTGATTGCAAATTTTTTTGTTAGTTGTATTCTTGTATATGTGTTATGATGAAGGTGTATCTTGAGATA TGACATATTTTATGCTTGTGTTTGTCATCTTTCAGCAATTGGATGTGCATTTTGCCATTTTCAATGTTTCTTTTTATCTT AAATAGAAGATTAGTCTAACTCATAAGTGCGGTCTTACATGATTGTAAATATGCAGGCTTTGCGTTTCTTTGTTGGTGAA CCAGTTTGGACTCCATACAACCGTCCACATGATCATCTCCCTGCAAGGTATAATTTAACAAGTTCAGTAGCCTATGGGAC AATCAGATAGGCTTTTTGTTGTGGTTCATATTGTGTTTTCAATGTGCAGAGAGGAATATATCAAGGCTTTTCTGGAAAAG GATGTTGCCAACAATGCTGTTGATGCTGCTGCATGA
CDS sequence (LotjaGi5g1v0310400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGACAGTAATGAAGATCAAAGACTTCCCCATCACAGAGAACCCAAGGAGTTTGTCTCATTGGCTAAACTTGATGA AATCGGAGTCCTTAGTTGGAAATTAGATGCTGATAACCATGAAACAGATCCAGATCTGAAAAAGATCTGTGAAGAACGTG GTTACACCTACAAGGATGTTTGTGAGATCTGCCCTGAAAAGATGCCAAACTATGAAGCGAAGATCAAAAGCTTCTTTGAA GAGCATCTTCACATTGATGAGGAGATCCGCTATGCTGTTGCTGGAAGTGGTTATTTTGATGTCAGGGATCGCAATGATGC TTGGATTCGTGTATGGGTGAAGAAAGGAGGAATGATCATTTTACCTGCTGGAATGTATCATCGCTTTACACTAGATGAGA CCAATTATATTAAGGCTTTGCGTTTCTTTGTTGGTGAACCAGTTTGGACTCCATACAACCGTCCACATGATCATCTCCCT GCAAGAGAGGAATATATCAAGGCTTTTCTGGAAAAGGATGTTGCCAACAATGCTGTTGATGCTGCTGCATGA
Protein sequence (LotjaGi5g1v0310400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDSNEDQRLPHHREPKEFVSLAKLDEIGVLSWKLDADNHETDPDLKKICEERGYTYKDVCEICPEKMPNYEAKIKSFFE EHLHIDEEIRYAVAGSGYFDVRDRNDAWIRVWVKKGGMIILPAGMYHRFTLDETNYIKALRFFVGEPVWTPYNRPHDHLP AREEYIKAFLEKDVANNAVDAAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 181 | 181 | 9.0E-99 | – | |
PANTHER | 1 | 181 | 181 | 9.0E-99 | ||
Pfam | 1 | 151 | 151 | 5.4E-60 | ||
SUPERFAMILY | 1 | 169 | 169 | 6.68E-50 | ||
Gene3D | 1 | 172 | 172 | 9.9E-84 | ||
Hamap | 1 | 159 | 159 | 34.294 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Acireductone dioxygenase [iron(II)-requiring] activity | Catalysis of the reaction: 1,2-dihydroxy-5-(methylthio)pent-1-en-3-one + O(2) = 4-methylthio-2-oxobutanoate + formate + H(+). | ||
Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
Biological process | L-methionine salvage from methylthioadenosine | The generation of L-methionine (2-amino-4-(methylthio)butanoic acid) from methylthioadenosine. | ||
Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi5g1v0310400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…