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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0311000 |
| Transcript ID | LotjaGi5g1v0311000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT2G15580.1 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1; TrEMBL-Plants: tr|I3SCZ1|I3SCZ1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0311000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:62902493..62904433) extracted from Lotus japonicus Gifu genome v1.2.
ATAGCTAGCTGTCACATATGCACATGATGAACATCCCACATAATTATTATCATTAGAAACCGCTTGCTAGCTTCACTCAT GAAAATTCCCCCTTCTAACTTACTTTTGATATTTACCAAGAGGTGAACAAACAAATGACAATAATTGATCACCCAACACA TCACGTAATCATCATGATTGGGTGGGTCTCAGATATACATAGATTGAAATCATGACAATAATAATAATTGTACTGCTGAT GAAGAGTTGTGACTAATGGCTGGTAGTGGTAGACTCCCTGGTGTTGGTGTTCCACCAAGGAGGAGATCAGAGCATCATCC TAGATATCATCATGAACACCACCGTAACTCTAATTACCTCGCCGATTCATCAGTCACTGCTTTGGATGAAACTGCTATTC AGGCGAGGCAACGGTTGCAGAAGAAGCTTGGACACTTCTTTTCCTCTTTCAGGTATATATATTTATGTTTTTCCCCACTT CCATTCAAATTAAGCTATATCCACTTTTGTACATGGATTTATATACATCAATATCCCAAACAACTTAATTAATTAAAGAA TTAATGTTGGAAATTAGAGAAACATGGAATTAGTTGTAGCTATATTTTCCTGTCAATGCTTTGTTATCATTTTCCTCTAG CTTCTTATATATATGCACAAGCTCTCAATTGAGGAATTTAATTACTTTCTTAATTCTTTTCCCCCCTGCTCCAGAGTGAA GATTCACATGAATATATTTGTTTGATTCAGTTTGGTACTTCTCCAACTCTTATTATATTGATTACATCTGGTTTTTATCG ATATTAATATATAAAAAAAAATATATATATATATATATATATATAGACATATATCTCATATGCCCGCTAGCTGTCCAAAT AAACTACTAGTCTATATATATGCACGTGATAATTCTATGACATATGAACATGAGGCTTGACCAATTTTACCAAAAAATAG AATCTCATTTGACTATCTATTTCTATATATGGTGTCAACTGTCAAGAAATATTGTTGTTATACACCCAATTCGAATCCTT TTCAGTCTAATTGATTAATTAATTTTCCGTGTCTTCTTTTGTTCTTGCTCCAATGTATATACAACTATGCTTATTTGAGT ATTGATTTACTAACTAATGAAGAATTGTGCCACTTTGTTATTACATTTACAGGTCAGATGATAATCCTAACAAAGAAGTT AGTTTACAGAAGAAGGATGCAGGGTTAGGTCGGAAGTTATTAGAAAGCTCATGGTTGTTGCGTGGCACCAAGTTTAAGAA AGAGAGAAAAGTTTGTGCAGTTTGCTTAGAAGATTTCCAGCAAAAGCAGCAGGTTATGAACCTTTCTTGCTCCCACAAGT ACCATTCAGCATGTCTTCTTCCCTGGCTTGAAGCTCACCCCCATTGTCCCTGCTGTAGAACCTCAGTTCAGTAAAGCCCT GATATATATGTTCTTGTTCTGTTGCGATTCAAATTCAACGCATGTTGATTGCAAAATCAGTTGTTTGCAAAAGTTTATTT ATTTTCTTCTAATGTTTAGCACATTGGTAATTTCATCACTACATGAAATTGTTGTTGTTAGCGTTCAAAACACGAAGTGT GGAATTCAAATTTTGAACCACTCAACTATTGAGTCGATTAGGCCAACACTAATAAACGTTGGCTTATCGTCAACTAATGT CGCTCACAACTTACACCAATATTACTTGCCAATTTACCGTCCATTTGGTATTCACAAGAGGCGATTTCGAGCTAACGATA ATATTATCGGTCAACTTAGCGTCAGCTTGAGCAGACACAAACGTGATATAGGCTGACGATGTCAATACTAACCTTCAATG GTTACATCGCTTGATTGTCATTTTAAGTCTCTCACACCCTGACTCCAACCCCGTCGCCCGGCCGCCCCAAGCGTCCCCCC TAAAATCTTCATACTTTCGAA
CDS sequence (LotjaGi5g1v0311000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGTAGTGGTAGACTCCCTGGTGTTGGTGTTCCACCAAGGAGGAGATCAGAGCATCATCCTAGATATCATCATGA ACACCACCGTAACTCTAATTACCTCGCCGATTCATCAGTCACTGCTTTGGATGAAACTGCTATTCAGGCGAGGCAACGGT TGCAGAAGAAGCTTGGACACTTCTTTTCCTCTTTCAGGTCAGATGATAATCCTAACAAAGAAGTTAGTTTACAGAAGAAG GATGCAGGGTTAGGTCGGAAGTTATTAGAAAGCTCATGGTTGTTGCGTGGCACCAAGTTTAAGAAAGAGAGAAAAGTTTG TGCAGTTTGCTTAGAAGATTTCCAGCAAAAGCAGCAGGTTATGAACCTTTCTTGCTCCCACAAGTACCATTCAGCATGTC TTCTTCCCTGGCTTGAAGCTCACCCCCATTGTCCCTGCTGTAGAACCTCAGTTCAGTAA
Protein sequence (LotjaGi5g1v0311000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGSGRLPGVGVPPRRRSEHHPRYHHEHHRNSNYLADSSVTALDETAIQARQRLQKKLGHFFSSFRSDDNPNKEVSLQKK DAGLGRKLLESSWLLRGTKFKKERKVCAVCLEDFQQKQQVMNLSCSHKYHSACLLPWLEAHPHCPCCRTSVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 57 | 149 | 93 | 3.3E-18 | – | |
| PANTHER | 57 | 149 | 93 | 3.3E-18 | – | |
| Gene3D | 65 | 152 | 88 | 1.8E-17 | ||
| CDD | 106 | 148 | 43 | 5.31771E-19 | – | |
| SUPERFAMILY | 106 | 151 | 46 | 1.16E-18 | – | |
| Pfam | 106 | 148 | 43 | 1.1E-10 | ||
| ProSiteProfiles | 107 | 148 | 42 | 11.914 | ||
| SMART | 107 | 147 | 41 | 5.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0311000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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