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LotjaGi5g1v0316200.4

Overview

Field Value
Gene ID LotjaGi5g1v0316200
Transcript ID LotjaGi5g1v0316200.4
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description ARM repeat protein interacting WITH ABF2 protein; TAIR: AT5G19330.1 ARM repeat protein interacting with ABF2; Swiss-Prot: sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2; TrEMBL-Plants: tr|A0A151U6Z8|A0A151U6Z8_CAJCA Vacuolar protein 8; Found in the gene: LotjaGi5g1v0316200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:63405416..63413164) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGTTTCAGAGGCGCCAAGACCACAGCCTCTCCGAGAGGAAAGGGCAGAAGCGGAAGCTAGATGACCAATTGCACGA CGACCGGCAGATCTCGCTCTCGCCGCCCACCGCCGACGAACGTGCGGCACTGCTCGCAGACGTCGCCGTACAGGTCTCCG TCCTCGACTCTACTTTCACGTGGAACGAATCCGATCGAGCCGCGGCCAAGCGCGCCACTCATGCGCTTGCCGATCTCGCT AAGAACGGTAAATCAATCCATTCCTCCGATCTCGCCGCGTGTTGCTTCCTTCGTTTGAATTCCGTTGTCCGTGCGGCGTT TTCTTCTTCTGTGTTTCTGTATGACGGTTGCATGTAGCGTTTTTGAATCTGTTTGTGGTTGTGTTTGCAGAGGAAGTTGT GAACGTGATTGTTGAAGGAGGTGCGATTCCGGCGTTGGTTAAGCATCTTCAGGCGCCACCTCTGAGTGATTTTGCTCAGA AGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGCGCGTTCGCTCTAGGACTTCTTGCCGTTAAGGTAATTTGATTT TTCTGTGACTATTAGTTTGGTATTGTTCCATATTTCATTATCTTCTTAGATTTTCCTTAGTCTTCTGCAAGTTCTGATGT ATATACTGGTTTTTTGTATGATTCTGCCAACTGAGATTAAGACTATAGTTCCATACCAATTCTAGATTTATGCAGTGTGT TGGTGGAAGATTTATTTTATGCTAAATCTGCTTATCGAGTTTTAAATATCTTCGGAGCATTATGGTAAATGATGCAAATG AATTGTTAGCGTCTGATAGAGATGTTAGTGCATGTTTGGAATTCACATTAGACCTCAAAATCATATTAAACCATGGAGCT TCTGCACTAACGTGCTTTGGAGTGTGTGTTTAACACATCCAAACACACTCAGTAGAGAACAGAAGTAGGCATATTAGAAA TGGACGGAATATAATATATACGTTCCGTTTTATGTTTGATGTATTTTAAATTTAGAACACAACGAGACATGAAGTTAAAG AAGTGGTATATTTTGATTTACTAGGGGCCAAGGAGAATAGAATGTAATTTTCCATTATGTTCTGTTTGCGCGCCAAATAC TACCTTAAGAATGAACGGAGGCTTCATAAATGAAGTGTGAGGATGCGTATTGTCGATCTGCCTGCTAAAGACTGTGTTAT GTGAATTATGTGGAATCATGAGCGTGATTATTGTCTTGAATGGAGTTCTTTATGGGCCCACAGTTAGCTGTGTATTTCAA GGAGGTGGATGGAAATGTGGTGGTTTATATCATCATCCACTTCCGGTTTCAGTTCTGTTATGTTTTGATTGTACCATTAC TTCCTCCTATCCTATTCCAGAGATGGGGGAAATATTAGATCACGGAGGAGAGTTGAGCCATATACTGGCATGATGAAATA CAGGGCTTTAGAATTGTTTGAAATTACAGAAATATTGTTAGTGGTAATTATGCATATGGTTTGTTCTCTTGTATTAATTC CATAAGGTGGATTGCATCAAGAACCTGCTGGTTGCTTGGAATCGTTTACTGAATGATTAGAATTCGTATGAATGCAACCT TTTGTCTCAAAGCTGGATGAGGCATGTAGTCTCCCTTAAATTTTATCTTTTCAATTTATCTATTAGTAACCAGCGATGGT GGAAATTATAGGGTTTAGGTGGTTAAATTAGAAAAAAAAAAAAGCGATGGGGTGACTCTTGAAAATGATGATAGTTATCC ACTTCAAAATTTCCAAACTTATGGACTCTGTTAGATTACAATTTAACTTCTAGCAAGATTCGAACACCTTCGAATGAATA ATTGTTTGAAAACAACTTGTTTACAGTTTTTTAGATGCCCACAAATTTAGAGTTATATTATATGCATAGGACAAAGACAA GAAAAAATAAAAGGAAATGTCCATAAGCATTCAATTTGGTGAAAAAAACATCTTGATTTAATGGATAGTCAAAAGCGAGA TGATGATGAAATGCATAATTAAAACAAATGTCTCTCATAGGTCTAAGAAAAAAGTTGGGGGCTTGGGGAGCTGTCTCCCT TTGTCCTAATGAAGATATACCATTGCAAGCCAGTCTGCTCTACTAGGTCCCTAATTTTTGCCTGGAACTTGGGGAGCATG TCTGTTACTATTGATTTCTGAATTCTAAGCATCCATTCATGTTCCCTGTTATGTCAATTACAGGATTGATTTTAGCCTTG CTTATGCGATGTGAATAGAGTAGCATCATTTCCTTCTTTGTAATGTCATATGCCAATCATCCATGATTTGGACCGAGTCA CTTTTTACCAGACTTTGTATTATATTATATGTGACAAATATCATAAACTTGCTATGTAACTTCTTTTCTTTTGGACAAAT TTCTTCATCAATAAAACAAAAAACATATACTTGCTAAAGTACTAGTTGAAATGCTTTCTACAGCCAGAACATCAGCAGCT CATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTCTTAAAGAGGCAGAAAAATGGTTTAACTTCTCGTGCCATTA ACAGTCTCATACGTAGGGCTGCGGACGCCATTACTAATCTTGCTCATGAGAATAGTAGCATTAAAACCAGTGTCAGGTTT GCTTCTTCAAGCACTACCTTATATTTAAACTTAGTTTGGATATTGTTCTCAATATGATCTGGACATATTGTGTAGGATGG AAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCCGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCACTTCGA ACCCTAGCTTTTAAAAATGATGAAAATAAAAACCAGGTAAGTGCCATTGCTTAAAATTGGATTTTCAATATGATACCAGT AGTCACACAATGTCATGACCTGCCAGATTGTTGAATGCAATGCTCTTCCGACTCTAATTCTAATGCTGCGTTCTGAAGAT GCTGCTATCCATTATGAAGCGGTATGACTAGGGAAACTTTAATTATAAATGCTAGGTTTTGTAATAATATTGAGATGTCT TTGCATATCTATAATCTGGCACATGCAATGCATTGGATTGTATTACAGGTTGGTGTGATTGGAAACCTAGTCCATTCTTC TCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTCATTAGATTACTTAGGTATATTATCAGGCCAT GCCCCTTCCTCTTCCCCTCAACCTCACCCTTAATTTGTATTGGTATTATTATATCCTCAATTTTATTTTATGTTTCCTGG CAACAATGTAAGATATTCCTAAAATAGTATTCTTGAATTAATGCATTCTAATAATGTTCTATTTAACAGCTCCTGCTGCT CAGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGTCAGTTTGCAGCAACTGATTCAGACTGCAAGGTATGTTTAAACTTC AGGGATGGAAAGGACAAGACATAACTTTAGTTGACATCACATGTAGTATAAATCCAAATCCAATTTTCATGTTTGGATTG CTTCATTTTTAGTATATGTATTTTTACTCGTACTGACTACTGATGGAAAAGAAGGCGAGGTTAACAGGGAAGAGACCCTT ACTCCACTATTGTGGTTGTTGCTTGAGCAGTGAAGAGGGGCAGAAAAGACAGAATTAACAACTGAATTTCAGTTGGGAGC AAATGTTTAATAACTCTTGTATCCAAGTTTGATCGTTTTATTTTACTTGTTAAATAAAGATTCCATAAGTCGTAAAATAG TGGATAGTAGAGGTAATACTATTGTCATGGTGCATCATATATTATATCTCCTTATCCTTTGTTTTTACCATCTGTTCCAC TTGGTTTTTTTAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAAC TCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCACAGGTATTTCTATTCTATTCTGTTTTTTATAATTTACTTGTG TAAGTTGGGAATGTAAAGTAACTGTTATTTTCACGGAAATGTGTTAACTGTTAAGTGTTTTGTTTCCCTCTGTTATAGTT TTTGGATTTATAACTCATCTTATACATCTCCATTCTCGATCTCTTTGTTAATCCCCATATTTATTGGGCTTATAACTAAT GACAGAACTCATCTTAGTAATATATTACAACATTTTGCTTATGTGCTGTTTCCATCTATAGTTGAACTGTAGGTTCTTTT TAACACACCCATTCCCTTTGGCCTGACATATATTACATATTTCAATTTCAGGACACACATAACCAAGCGGGTATTGCACA CAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCAGCTTTTGCTCTTT ATGGCCTTGCAGATAATGAGGTATGAGCAACTGAAAACTCAAATGAAGTGAACATCTTCTGTCTTGATTGCTTTAGAAAC TGGTTACTTCGAAAGAAATGTAATTAACTATTCCCTTCTTTGTTCTTTATTTTATTTTTTCCTTTAGGATAATGTGTCCG ATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAGGAAGGAGAGTTTATTGTTCAAGTAAGTTTCCTCTTTACTACCTAT TTTAGCTTTAATTTCAGGGTTTCTGCTTTTATCCATGGATGCCTGTAGTAAGGGGCCTTAGAATAATTAATGGTTGCATG TGAGTGTTTGTAACTTAAGACTGGAGGAATACATATTTTTTTTGGATCTATACTGACCTCATTGGATATGGTTTCTATTG CAGGCAACTAAAGATTGTGTAGCAAAGACATTGAAAAGATTAGAGGAGAAGATTCACGACCGTGTATGATGTCATATTCA TATTATTTTCTGCATTTTATTGTAATTAGTAGAGGAAATAATGGGGGTGCTACAGTATATTGGTTGTCAGTTCTTTAATT CTTGTATTCAAATTTGTAATATGTCAATTTTCTTCTTGTAGGTGCTGAGCCATTTGTTATACCTCATGAGAGTTTCAGAA AAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGCTCTGCAGATGATCAAAGAAGAATTTTTATTGATAA TCATGGTATGCATCTTCTTAGTAAAATACTTTTATGGGTTTGATACTTTAATTCATGTTTTTTTTTTTGTATAAACTCCT TTTGTGCTTTTTCTATTTTGAAAATGAGCATCTGTCCATGTAGGTCTTGAGTTGCTTATTGGCCTTCTTGGCTCATCTAG CTCTAAGCAGCAACTTGACGGTGCTGTGGCTTTATGCAAGCTAGCCAATAAAGCCTCGACTCTGTCTCCTGTGGATGCTG CTCCTCCTTCTCCAACACCACAGGTAGGCATCCAGTTGGATTGTCCTTGGTTTTTCACAATCCCTTTGACTAGAGTTCAA TTATAAAAGACAAGTGTTCTTCTTGATGTCCATGGGCTTCATGTACTTTGATATCATAAGTTTTTATTTTTTCTAATAAT TTTGACGACATAGGAAAATGCTGTAGCCTCTTTGCATATCACCTCTTTGCGCTGATAATATCTTTGTACACACTACACAC ATTCAGAAAGTTAAGAAATGTGAGGCTGTTTGCTATTTTGCTTATATAAATCCTACCATTTGTTTAAAATACTTTGGTAT TAAATTTTCTTCTCATACTTAGTGTCCTATATAATAGTGAGTGGCCAAAACAATGAATTTAATGGATTTACATTAGTTGT GTATGATGTATGTCATGACTGCTGGCATTTAAAGTGTATTTGAATATCTGATTGATGGTTTCTAGTTATAAACATAAAGT CCATTTAAACAATGACCATCCAATGATATAGTAATCAGCTGTCATTATGATCAATGTCTTGCTCTTTTACATTGCCTGCC CTTTACATAAGAATCTTGGTGCTGAGCTCTCTTTTCACTCTGTATTGTCAAAATGATTCTGGAATGAGGTGTTCCTTAAG GCTGGATTATCTATGTTCATAAACCATTCTTCTTGCAGGTCTATTTAGGAGAGCAGTACGTAAACAATGCTACATTGTCC GACGTTACATTTTTGGTTGAAGGTTGATATTTTTTGTCCACATTGTTTCGTTATTAAAAGTTAAAACTGTTGCTTGAAAT GTGTTATCAGTTGACATGGATGATTAACTGGGTAACCTCTGTTCTTCGTTGCAGGCAAACGATTTTATGCTCATAGAATT TGTTTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGTGAGTATATATGGAGCTCTGCCACT GTTCCATCTTATTTCTCCATCCCCACCCCTTTCTCTTCCAGATGCTCCTCCAAGAAATAAGGATACTACAAGAAGCAACT TTTTGACTATCCTTAATAGAAAAAATATGTGCTGTCCAAAAGAGGAAAAGCTCCACTAAGATTCCGCTTGGTTTCATGAG CTACATTATTTATCACATATGGTTTTGGTTTTTATGCTCCGCTAAGACTCCACTTGGTTTCATAAGCTACATTATTTATC ACCTATGGTGTTGGTTTTCATGCTCTTCAAACCTCCTAACAACTTTTGCTTTTATCCATGAATCTTGGTTGTTGATTGGA ATGGTGACTTTAAATTTGAAGTATAAACTATCAAAACTTGCATATTAATTTAGCAGAAAGTGATAGATCTATTCACTAAT GTACATATTTGTTCTATTGCATGACAGGAAAAGGATGCAAGAGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGA GATGATGATGAGGTCTAATAAATTCTGCAGTCTTGTTTTATAGAAGTTCTAATGTGAAAGCTTCTGATAATTTGTGAACA ACTTATATCTCATTGTTAACCTCATTTTTGTCCAGATTTATATATACTGGTTCAGTTGATATCACTGTGGATATTGCTCA AGATCTACTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGTGAGCT AGGAAAATTGGTTTCCTCTCTCCCTTCTCTCACTATTCCCACTATTTGTGTGTGTATGTATATGTGTATATATATATAAT AATATATATTGTTGGAAGATATGGTGTCTCCTAATATATTATTTCTTTATTTGTTCTGTAGTAAATCTGTATCTGAATAA GACTAATATACATCTCTCTCTCTCTCTCTCGCTACTCTATATAGTAAAATATTTTGCTTGTTTTCGTGCACATGGTATTA TACTGGAAAGTGGGTGCCTCATAACCTGATGTTTTTGTCACAGGATATATCACTAGAGAATGTGTCATGTATGTACGAAC TTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATCCTCTTTATCTTGGAGCAATTTCATAAGTTGAGCGAA AGGCCAGGGTATTAATCTGATTCCCTTCAATTCCCTGTTTGATGTTTATACTGATCTTATAGATTGGCACCTTGTTTAGT AGTGCTCTCTGTCTGTCTGTATGTATATTATAGTTTTGGTGAATCATGTTCTTGACCTAATGGGAATTCAGATATTGAGA TTTAATGACCTTCTGTCACGGGTCTAAATCATAATTATAAAGCCTACTGTTTTGTGATAGTAGGCTTTATAATTAAGAAT GTAGTGAATTTGTTTTCATTTTTAGTATAAATACCCTTTTCTTTAAAGATAAAGCAGAAACTGGGAATG 

CDS sequence (LotjaGi5g1v0316200.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTTCAGAGGCGCCAAGACCACAGCCTCTCCGAGAGGAAAGGGCAGAAGCGGAAGCTAGATGACCAATTGCACGA CGACCGGCAGATCTCGCTCTCGCCGCCCACCGCCGACGAACGTGCGGCACTGCTCGCAGACGTCGCCGTACAGGTCTCCG TCCTCGACTCTACTTTCACGTGGAACGAATCCGATCGAGCCGCGGCCAAGCGCGCCACTCATGCGCTTGCCGATCTCGCT AAGAACGAGGAAGTTGTGAACGTGATTGTTGAAGGAGGTGCGATTCCGGCGTTGGTTAAGCATCTTCAGGCGCCACCTCT GAGTGATTTTGCTCAGAAGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGCGCGTTCGCTCTAGGACTTCTTGCCG TTAAGAGGCAGAAAAATGGTTTAACTTCTCGTGCCATTAACAGTCTCATACGTAGGGCTGCGGACGCCATTACTAATCTT GCTCATGAGAATAGTAGCATTAAAACCAGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGC CGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCACTTCGAACCCTAGCTTTTAAAAATGATGAAAATAAAAACCAGATTG TTGAATGCAATGCTCTTCCGACTCTAATTCTAATGCTGCGTTCTGAAGATGCTGCTATCCATTATGAAGCGGTTGGTGTG ATTGGAAACCTAGTCCATTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTCATTAGATT ACTTAGCTCCTGCTGCTCAGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGTCAGTTTGCAGCAACTGATTCAGACTGCA AGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGAGAAATG TCTGCCTTTGCATTAGGGAGATTGGCACAGGACACACATAACCAAGCGGGTATTGCACACAATGGTGGCTTAGTGCCATT GCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCAGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGG ATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGAT TGTGTAGCAAAGACATTGAAAAGATTAGAGGAGAAGATTCACGACCGTGTGCTGAGCCATTTGTTATACCTCATGAGAGT TTCAGAAAAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGCTCTGCAGATGATCAAAGAAGAATTTTTA TTGATAATCATGGTCTTGAGTTGCTTATTGGCCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGACGGTGCTGTGGCT TTATGCAAGCTAGCCAATAAAGCCTCGACTCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTT AGGAGAGCAGTACGTAAACAATGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAA TTTGTTTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGTGAGAAAAGGATGCAAGAGACAT AGAGATCCCAAATATTAG 

Protein sequence (LotjaGi5g1v0316200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEFQRRQDHSLSERKGQKRKLDDQLHDDRQISLSPPTADERAALLADVAVQVSVLDSTFTWNESDRAAAKRATHALADLA KNEEVVNVIVEGGAIPALVKHLQAPPLSDFAQKPLPFEHEVEKGSAFALGLLAVKRQKNGLTSRAINSLIRRAADAITNL AHENSSIKTSVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGV IGNLVHSSPNIKKEVLLAGALQPVIRLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREM SAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQEGEFIVQATKD CVAKTLKRLEEKIHDRVLSHLLYLMRVSEKGFQRRVALALAHLCSADDQRRIFIDNHGLELLIGLLGSSSSKQQLDGAVA LCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYRVRKGCKRH RDPKY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 29 29 -
PANTHER 1 555 555 1.3E-299
MobiDBLite 1 33 33 -
PANTHER 1 555 555 1.3E-299
Gene3D 32 113 82 2.6E-5
SMART 82 162 81 9.8
Gene3D 139 251 113 2.4E-30
SUPERFAMILY 149 487 339 7.92E-55
SMART 164 204 41 9.1E-8
Pfam 171 203 33 1.2E-7
ProSiteProfiles 175 210 36 12.512
Pfam 206 245 40 2.9E-7
SMART 206 246 41 4.6E-6
ProSiteProfiles 217 259 43 9.537
SMART 248 288 41 0.45
Gene3D 252 410 159 7.4E-27
SMART 290 330 41 0.014
Pfam 290 329 40 4.1E-5
ProSiteProfiles 301 343 43 10.482
SMART 331 371 41 8.5
ProSiteProfiles 342 384 43 9.887
Gene3D 411 494 84 1.9E-9
SMART 446 486 41 37.0
Gene3D 497 561 65 3.7E-10
CDD 505 554 50 5.13459E-30
SUPERFAMILY 510 552 43 5.18E-10
Pfam 511 550 40 7.4E-9
ProSiteProfiles 518 547 30 11.027

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0316200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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