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LotjaGi5g1v0316200.5

Overview

Field Value
Gene ID LotjaGi5g1v0316200
Transcript ID LotjaGi5g1v0316200.5
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description ARM repeat protein interacting WITH ABF2 protein; TAIR: AT5G19330.1 ARM repeat protein interacting with ABF2; Swiss-Prot: sp|B9DHT4|ARIA_ARATH ARM REPEAT PROTEIN INTERACTING WITH ABF2; TrEMBL-Plants: tr|A0A151U6Z8|A0A151U6Z8_CAJCA Vacuolar protein 8; Found in the gene: LotjaGi5g1v0316200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:63405416..63413164) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGTTTCAGAGGCGCCAAGACCACAGCCTCTCCGAGAGGAAAGGGCAGAAGCGGAAGCTAGATGACCAATTGCACGA CGACCGGCAGATCTCGCTCTCGCCGCCCACCGCCGACGAACGTGCGGCACTGCTCGCAGACGTCGCCGTACAGGTCTCCG TCCTCGACTCTACTTTCACGTGGAACGAATCCGATCGAGCCGCGGCCAAGCGCGCCACTCATGCGCTTGCCGATCTCGCT AAGAACGGTAAATCAATCCATTCCTCCGATCTCGCCGCGTGTTGCTTCCTTCGTTTGAATTCCGTTGTCCGTGCGGCGTT TTCTTCTTCTGTGTTTCTGTATGACGGTTGCATGTAGCGTTTTTGAATCTGTTTGTGGTTGTGTTTGCAGAGGAAGTTGT GAACGTGATTGTTGAAGGAGGTGCGATTCCGGCGTTGGTTAAGCATCTTCAGGCGCCACCTCTGAGTGATTTTGCTCAGA AGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGCGCGTTCGCTCTAGGACTTCTTGCCGTTAAGGTAATTTGATTT TTCTGTGACTATTAGTTTGGTATTGTTCCATATTTCATTATCTTCTTAGATTTTCCTTAGTCTTCTGCAAGTTCTGATGT ATATACTGGTTTTTTGTATGATTCTGCCAACTGAGATTAAGACTATAGTTCCATACCAATTCTAGATTTATGCAGTGTGT TGGTGGAAGATTTATTTTATGCTAAATCTGCTTATCGAGTTTTAAATATCTTCGGAGCATTATGGTAAATGATGCAAATG AATTGTTAGCGTCTGATAGAGATGTTAGTGCATGTTTGGAATTCACATTAGACCTCAAAATCATATTAAACCATGGAGCT TCTGCACTAACGTGCTTTGGAGTGTGTGTTTAACACATCCAAACACACTCAGTAGAGAACAGAAGTAGGCATATTAGAAA TGGACGGAATATAATATATACGTTCCGTTTTATGTTTGATGTATTTTAAATTTAGAACACAACGAGACATGAAGTTAAAG AAGTGGTATATTTTGATTTACTAGGGGCCAAGGAGAATAGAATGTAATTTTCCATTATGTTCTGTTTGCGCGCCAAATAC TACCTTAAGAATGAACGGAGGCTTCATAAATGAAGTGTGAGGATGCGTATTGTCGATCTGCCTGCTAAAGACTGTGTTAT GTGAATTATGTGGAATCATGAGCGTGATTATTGTCTTGAATGGAGTTCTTTATGGGCCCACAGTTAGCTGTGTATTTCAA GGAGGTGGATGGAAATGTGGTGGTTTATATCATCATCCACTTCCGGTTTCAGTTCTGTTATGTTTTGATTGTACCATTAC TTCCTCCTATCCTATTCCAGAGATGGGGGAAATATTAGATCACGGAGGAGAGTTGAGCCATATACTGGCATGATGAAATA CAGGGCTTTAGAATTGTTTGAAATTACAGAAATATTGTTAGTGGTAATTATGCATATGGTTTGTTCTCTTGTATTAATTC CATAAGGTGGATTGCATCAAGAACCTGCTGGTTGCTTGGAATCGTTTACTGAATGATTAGAATTCGTATGAATGCAACCT TTTGTCTCAAAGCTGGATGAGGCATGTAGTCTCCCTTAAATTTTATCTTTTCAATTTATCTATTAGTAACCAGCGATGGT GGAAATTATAGGGTTTAGGTGGTTAAATTAGAAAAAAAAAAAAGCGATGGGGTGACTCTTGAAAATGATGATAGTTATCC ACTTCAAAATTTCCAAACTTATGGACTCTGTTAGATTACAATTTAACTTCTAGCAAGATTCGAACACCTTCGAATGAATA ATTGTTTGAAAACAACTTGTTTACAGTTTTTTAGATGCCCACAAATTTAGAGTTATATTATATGCATAGGACAAAGACAA GAAAAAATAAAAGGAAATGTCCATAAGCATTCAATTTGGTGAAAAAAACATCTTGATTTAATGGATAGTCAAAAGCGAGA TGATGATGAAATGCATAATTAAAACAAATGTCTCTCATAGGTCTAAGAAAAAAGTTGGGGGCTTGGGGAGCTGTCTCCCT TTGTCCTAATGAAGATATACCATTGCAAGCCAGTCTGCTCTACTAGGTCCCTAATTTTTGCCTGGAACTTGGGGAGCATG TCTGTTACTATTGATTTCTGAATTCTAAGCATCCATTCATGTTCCCTGTTATGTCAATTACAGGATTGATTTTAGCCTTG CTTATGCGATGTGAATAGAGTAGCATCATTTCCTTCTTTGTAATGTCATATGCCAATCATCCATGATTTGGACCGAGTCA CTTTTTACCAGACTTTGTATTATATTATATGTGACAAATATCATAAACTTGCTATGTAACTTCTTTTCTTTTGGACAAAT TTCTTCATCAATAAAACAAAAAACATATACTTGCTAAAGTACTAGTTGAAATGCTTTCTACAGCCAGAACATCAGCAGCT CATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTCTTAAAGAGGCAGAAAAATGGTTTAACTTCTCGTGCCATTA ACAGTCTCATACGTAGGGCTGCGGACGCCATTACTAATCTTGCTCATGAGAATAGTAGCATTAAAACCAGTGTCAGGTTT GCTTCTTCAAGCACTACCTTATATTTAAACTTAGTTTGGATATTGTTCTCAATATGATCTGGACATATTGTGTAGGATGG AAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCCGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCACTTCGA ACCCTAGCTTTTAAAAATGATGAAAATAAAAACCAGGTAAGTGCCATTGCTTAAAATTGGATTTTCAATATGATACCAGT AGTCACACAATGTCATGACCTGCCAGATTGTTGAATGCAATGCTCTTCCGACTCTAATTCTAATGCTGCGTTCTGAAGAT GCTGCTATCCATTATGAAGCGGTATGACTAGGGAAACTTTAATTATAAATGCTAGGTTTTGTAATAATATTGAGATGTCT TTGCATATCTATAATCTGGCACATGCAATGCATTGGATTGTATTACAGGTTGGTGTGATTGGAAACCTAGTCCATTCTTC TCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTCATTAGATTACTTAGGTATATTATCAGGCCAT GCCCCTTCCTCTTCCCCTCAACCTCACCCTTAATTTGTATTGGTATTATTATATCCTCAATTTTATTTTATGTTTCCTGG CAACAATGTAAGATATTCCTAAAATAGTATTCTTGAATTAATGCATTCTAATAATGTTCTATTTAACAGCTCCTGCTGCT CAGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGTCAGTTTGCAGCAACTGATTCAGACTGCAAGGTATGTTTAAACTTC AGGGATGGAAAGGACAAGACATAACTTTAGTTGACATCACATGTAGTATAAATCCAAATCCAATTTTCATGTTTGGATTG CTTCATTTTTAGTATATGTATTTTTACTCGTACTGACTACTGATGGAAAAGAAGGCGAGGTTAACAGGGAAGAGACCCTT ACTCCACTATTGTGGTTGTTGCTTGAGCAGTGAAGAGGGGCAGAAAAGACAGAATTAACAACTGAATTTCAGTTGGGAGC AAATGTTTAATAACTCTTGTATCCAAGTTTGATCGTTTTATTTTACTTGTTAAATAAAGATTCCATAAGTCGTAAAATAG TGGATAGTAGAGGTAATACTATTGTCATGGTGCATCATATATTATATCTCCTTATCCTTTGTTTTTACCATCTGTTCCAC TTGGTTTTTTTAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAAC TCAGAGAAATGTCTGCCTTTGCATTAGGGAGATTGGCACAGGTATTTCTATTCTATTCTGTTTTTTATAATTTACTTGTG TAAGTTGGGAATGTAAAGTAACTGTTATTTTCACGGAAATGTGTTAACTGTTAAGTGTTTTGTTTCCCTCTGTTATAGTT TTTGGATTTATAACTCATCTTATACATCTCCATTCTCGATCTCTTTGTTAATCCCCATATTTATTGGGCTTATAACTAAT GACAGAACTCATCTTAGTAATATATTACAACATTTTGCTTATGTGCTGTTTCCATCTATAGTTGAACTGTAGGTTCTTTT TAACACACCCATTCCCTTTGGCCTGACATATATTACATATTTCAATTTCAGGACACACATAACCAAGCGGGTATTGCACA CAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCAGCTTTTGCTCTTT ATGGCCTTGCAGATAATGAGGTATGAGCAACTGAAAACTCAAATGAAGTGAACATCTTCTGTCTTGATTGCTTTAGAAAC TGGTTACTTCGAAAGAAATGTAATTAACTATTCCCTTCTTTGTTCTTTATTTTATTTTTTCCTTTAGGATAATGTGTCCG ATTTCATTAGGGTAGGTGGAGTTCAGAGACTGCAGGAAGGAGAGTTTATTGTTCAAGTAAGTTTCCTCTTTACTACCTAT TTTAGCTTTAATTTCAGGGTTTCTGCTTTTATCCATGGATGCCTGTAGTAAGGGGCCTTAGAATAATTAATGGTTGCATG TGAGTGTTTGTAACTTAAGACTGGAGGAATACATATTTTTTTTGGATCTATACTGACCTCATTGGATATGGTTTCTATTG CAGGCAACTAAAGATTGTGTAGCAAAGACATTGAAAAGATTAGAGGAGAAGATTCACGACCGTGTATGATGTCATATTCA TATTATTTTCTGCATTTTATTGTAATTAGTAGAGGAAATAATGGGGGTGCTACAGTATATTGGTTGTCAGTTCTTTAATT CTTGTATTCAAATTTGTAATATGTCAATTTTCTTCTTGTAGGTGCTGAGCCATTTGTTATACCTCATGAGAGTTTCAGAA AAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGCTCTGCAGATGATCAAAGAAGAATTTTTATTGATAA TCATGGTATGCATCTTCTTAGTAAAATACTTTTATGGGTTTGATACTTTAATTCATGTTTTTTTTTTTGTATAAACTCCT TTTGTGCTTTTTCTATTTTGAAAATGAGCATCTGTCCATGTAGGTCTTGAGTTGCTTATTGGCCTTCTTGGCTCATCTAG CTCTAAGCAGCAACTTGACGGTGCTGTGGCTTTATGCAAGCTAGCCAATAAAGCCTCGACTCTGTCTCCTGTGGATGCTG CTCCTCCTTCTCCAACACCACAGGTAGGCATCCAGTTGGATTGTCCTTGGTTTTTCACAATCCCTTTGACTAGAGTTCAA TTATAAAAGACAAGTGTTCTTCTTGATGTCCATGGGCTTCATGTACTTTGATATCATAAGTTTTTATTTTTTCTAATAAT TTTGACGACATAGGAAAATGCTGTAGCCTCTTTGCATATCACCTCTTTGCGCTGATAATATCTTTGTACACACTACACAC ATTCAGAAAGTTAAGAAATGTGAGGCTGTTTGCTATTTTGCTTATATAAATCCTACCATTTGTTTAAAATACTTTGGTAT TAAATTTTCTTCTCATACTTAGTGTCCTATATAATAGTGAGTGGCCAAAACAATGAATTTAATGGATTTACATTAGTTGT GTATGATGTATGTCATGACTGCTGGCATTTAAAGTGTATTTGAATATCTGATTGATGGTTTCTAGTTATAAACATAAAGT CCATTTAAACAATGACCATCCAATGATATAGTAATCAGCTGTCATTATGATCAATGTCTTGCTCTTTTACATTGCCTGCC CTTTACATAAGAATCTTGGTGCTGAGCTCTCTTTTCACTCTGTATTGTCAAAATGATTCTGGAATGAGGTGTTCCTTAAG GCTGGATTATCTATGTTCATAAACCATTCTTCTTGCAGGTCTATTTAGGAGAGCAGTACGTAAACAATGCTACATTGTCC GACGTTACATTTTTGGTTGAAGGTTGATATTTTTTGTCCACATTGTTTCGTTATTAAAAGTTAAAACTGTTGCTTGAAAT GTGTTATCAGTTGACATGGATGATTAACTGGGTAACCTCTGTTCTTCGTTGCAGGCAAACGATTTTATGCTCATAGAATT TGTTTACTTGCATCTTCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGTGAGTATATATGGAGCTCTGCCACT GTTCCATCTTATTTCTCCATCCCCACCCCTTTCTCTTCCAGATGCTCCTCCAAGAAATAAGGATACTACAAGAAGCAACT TTTTGACTATCCTTAATAGAAAAAATATGTGCTGTCCAAAAGAGGAAAAGCTCCACTAAGATTCCGCTTGGTTTCATGAG CTACATTATTTATCACATATGGTTTTGGTTTTTATGCTCCGCTAAGACTCCACTTGGTTTCATAAGCTACATTATTTATC ACCTATGGTGTTGGTTTTCATGCTCTTCAAACCTCCTAACAACTTTTGCTTTTATCCATGAATCTTGGTTGTTGATTGGA ATGGTGACTTTAAATTTGAAGTATAAACTATCAAAACTTGCATATTAATTTAGCAGAAAGTGATAGATCTATTCACTAAT GTACATATTTGTTCTATTGCATGACAGGAAAAGGATGCAAGAGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGA GATGATGATGAGGTCTAATAAATTCTGCAGTCTTGTTTTATAGAAGTTCTAATGTGAAAGCTTCTGATAATTTGTGAACA ACTTATATCTCATTGTTAACCTCATTTTTGTCCAGATTTATATATACTGGTTCAGTTGATATCACTGTGGATATTGCTCA AGATCTACTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACGATTGCACAGGTGAGCT AGGAAAATTGGTTTCCTCTCTCCCTTCTCTCACTATTCCCACTATTTGTGTGTGTATGTATATGTGTATATATATATAAT AATATATATTGTTGGAAGATATGGTGTCTCCTAATATATTATTTCTTTATTTGTTCTGTAGTAAATCTGTATCTGAATAA GACTAATATACATCTCTCTCTCTCTCTCTCGCTACTCTATATAGTAAAATATTTTGCTTGTTTTCGTGCACATGGTATTA TACTGGAAAGTGGGTGCCTCATAACCTGATGTTTTTGTCACAGGATATATCACTAGAGAATGTGTCATGTATGTACGAAC TTTCAGAAGCCTTCAATGCAATATCATTGAGGCATGCATGCATCCTCTTTATCTTGGAGCAATTTCATAAGTTGAGCGAA AGGCCAGGGTATTAATCTGATTCCCTTCAATTCCCTGTTTGATGTTTATACTGATCTTATAGATTGGCACCTTGTTTAGT AGTGCTCTCTGTCTGTCTGTATGTATATTATAGTTTTGGTGAATCATGTTCTTGACCTAATGGGAATTCAGATATTGAGA TTTAATGACCTTCTGTCACGGGTCTAAATCATAATTATAAAGCCTACTGTTTTGTGATAGTAGGCTTTATAATTAAGAAT GTAGTGAATTTGTTTTCATTTTTAGTATAAATACCCTTTTCTTTAAAGATAAAGCAGAAACTGGGAATG 

CDS sequence (LotjaGi5g1v0316200.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGTTTCAGAGGCGCCAAGACCACAGCCTCTCCGAGAGGAAAGGGCAGAAGCGGAAGCTAGATGACCAATTGCACGA CGACCGGCAGATCTCGCTCTCGCCGCCCACCGCCGACGAACGTGCGGCACTGCTCGCAGACGTCGCCGTACAGGTCTCCG TCCTCGACTCTACTTTCACGTGGAACGAATCCGATCGAGCCGCGGCCAAGCGCGCCACTCATGCGCTTGCCGATCTCGCT AAGAACGAGGAAGTTGTGAACGTGATTGTTGAAGGAGGTGCGATTCCGGCGTTGGTTAAGCATCTTCAGGCGCCACCTCT GAGTGATTTTGCTCAGAAGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGCGCGTTCGCTCTAGGACTTCTTGCCG TTAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTCTTAAAGAGGCAGAAAAAT GGTTTAACTTCTCGTGCCATTAACAGTCTCATACGTAGGGCTGCGGACGCCATTACTAATCTTGCTCATGAGAATAGTAG CATTAAAACCAGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCCGATACAAAAGTGCAAA GAGCAGCTGCTGGTGCACTTCGAACCCTAGCTTTTAAAAATGATGAAAATAAAAACCAGATTGTTGAATGCAATGCTCTT CCGACTCTAATTCTAATGCTGCGTTCTGAAGATGCTGCTATCCATTATGAAGCGGTTGGTGTGATTGGAAACCTAGTCCA TTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAACCAGTCATTAGATTACTTAGCTCCTGCTGCT CAGAAAGCCAGAGGGAAGCAGCCTTGTTACTTGGTCAGTTTGCAGCAACTGATTCAGACTGCAAGGTTCACATTGTACAG AGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGTACAACTCAGAGAAATGTCTGCCTTTGCATTAGG GAGATTGGCACAGGACACACATAACCAAGCGGGTATTGCACACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACT CAAAAAATGGGTCTTTGCAACATAATGCAGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTC ATTAGGGTAGGTGGAGTTCAGAGACTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTAGCAAAGACATT GAAAAGATTAGAGGAGAAGATTCACGACCGTGTGCTGAGCCATTTGTTATACCTCATGAGAGTTTCAGAAAAGGGTTTTC AAAGACGAGTTGCTTTGGCTCTTGCACATCTTTGCTCTGCAGATGATCAAAGAAGAATTTTTATTGATAATCATGGTCTT GAGTTGCTTATTGGCCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGACGGTGCTGTGGCTTTATGCAAGCTAGCCAA TAAAGCCTCGACTCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCACAGGTCTATTTAGGAGAGCAGTACGTAA ACAATGCTACATTGTCCGACGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTTTACTTGCATCT TCAGATGCATTTCGTGCAATGTTTGATGGTGGTTATAGGGTGAGAAAAGGATGCAAGAGACATAGAGATCCCAAATATTA G 

Protein sequence (LotjaGi5g1v0316200.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEFQRRQDHSLSERKGQKRKLDDQLHDDRQISLSPPTADERAALLADVAVQVSVLDSTFTWNESDRAAAKRATHALADLA KNEEVVNVIVEGGAIPALVKHLQAPPLSDFAQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRQKN GLTSRAINSLIRRAADAITNLAHENSSIKTSVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNAL PTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIRLLSSCCSESQREAALLLGQFAATDSDCKVHIVQ RGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDF IRVGGVQRLQEGEFIVQATKDCVAKTLKRLEEKIHDRVLSHLLYLMRVSEKGFQRRVALALAHLCSADDQRRIFIDNHGL ELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLAS SDAFRAMFDGGYRVRKGCKRHRDPKY 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 29 29 -
PANTHER 1 576 576 0.0
MobiDBLite 1 33 33 -
PANTHER 1 576 576 0.0
Gene3D 29 229 201 6.1E-34
SUPERFAMILY 63 411 349 2.88E-56
SMART 82 134 53 10.0
ProSiteProfiles 93 147 55 9.187
SMART 135 183 49 6.0E-5
ProSiteProfiles 146 196 51 10.132
SMART 185 225 41 9.1E-8
Pfam 192 224 33 1.3E-7
ProSiteProfiles 196 231 36 12.512
SMART 227 267 41 4.6E-6
Pfam 227 266 40 3.1E-7
Gene3D 230 435 206 2.6E-43
ProSiteProfiles 238 280 43 9.537
SMART 269 309 41 0.45
Pfam 311 350 40 4.3E-5
SMART 311 351 41 0.014
ProSiteProfiles 322 364 43 10.482
SMART 352 392 41 8.5
ProSiteProfiles 363 405 43 9.887
Gene3D 436 515 80 2.0E-9
SUPERFAMILY 437 506 70 1.44E-7
SMART 467 507 41 37.0
Gene3D 518 582 65 3.9E-10
CDD 526 575 50 4.87249E-30
SUPERFAMILY 531 573 43 5.41E-10
Pfam 532 571 40 7.8E-9
ProSiteProfiles 539 568 30 11.027

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0316200.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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