Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0316600 |
| Transcript ID | LotjaGi5g1v0316600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAN GTPase-activating protein 2; TAIR: AT5G19320.1 RAN GTPase activating protein 2; Swiss-Prot: sp|Q9M651|RAGP2_ARATH RAN GTPase-activating protein 2; TrEMBL-Plants: tr|I1NGB7|I1NGB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63434476..63437717) extracted from Lotus japonicus Gifu genome v1.2.
ATATCTTCTTGTTCCCTTTTCAAAAAGGTGACATTTTTAGGGTAGTGGCCATAATAACCACCAATCACAAGCCGTTGGTA CATTTTCAAAAACCATCACTTTTTCAATTTTCATCATCATCTCAATTCTGATTCATTTCAAGGTTGATTTTCCCTCCATT CTCTCACTAATCACTCACTCTCAATTCTTAAACGCCACTCCCTTCATCCCTTTCGGATCAATTTCAACTGCAACTGCAAC TGCAGCAGAATACTCACTCTTTCTCAGATCAACACAAGAGGTACCTACCCATTTCTCATTTCTAGGGTTTTTGTTTCCCA CATTTCAATTTCATTGCGCTCTCTCTAATTGCTTTCAAATTCGTGATTCAAGTTTGAATTTTTCCGCAGTCTCAGATCTG TTGCACTTTGAGTTCAAAGCTTAGGTTTTTTTTTTGTTATGATGGGTTTGATTTTTGTGGGTGAAATTGTTTTTCGGTTA TTTACTGTTAATTATTTTGTGGGTGTTCTTTTCTCTTCCGAGGAAACAATCTCGTACTTTGACGACACGCTTTGCCATTT TTTTCAATCATATTTTGTAGTTTTACTTAGTTTTATGTAGCCTGTTGTCGCATGAATAGCAACAGAACATGCCCTACTTC ATTATTGCTCTCAATTTAGCCTATACATTGTGATATTCTTGCTGTTGCAATGATTTCTTTGATGGAGTTTTTATTGCTGC AATTCCTACTTCCTGATCTGCTTTTCAAGCTGTGTTATTTAATGGACTATGATTCTCTAATATGTATATGATAGTGTCCA GTGAAACACTATATCTATACCTCTCTTCATAAATATATAGAGGTCTCGCCAATTCAATTCATCATTACAATGTCATGCGG AATTTCCACATGATGGGATCCTAATCTTTGTTGTAAGTTCTTAACACTAATCTCCAATAGACTAACTGCATTGGGAATGC GGGACATCTAATAATGATGACATTAACAAGTGATTTAACTGGTGTATCTTTTTAGATGCGTTTTAATTTTTACATTTTCC GCTTACAAGGGCTTGGAGAATGTTTTACTCTATGATTTCCATTGTTCTACTTCTACAACTCTTTTCTGAATACTTTATTC TTATCCTGTCTCCTATAATATTCCATGTATAGGATCTACTTCGTACTTACATGAGTATTTCTTGTAGGTTTCATTGCTAT GGAGCTGAATTCGCAGAACAGGCCATTTTCAATCAAATTATGGCCTCCTAGTCAGAACACTAGGCAGACACTTGTGGAGA GGATGACCAATAATCTGACTACTAAATCTATCTTCACTCAGAAGTATGGAACTTTGGACAAGGAAGAGGCTGAAGAGAAT GCAAAAAAAATCGAAGATGCGGCTTTTGTCACAGCAAACTTACATTATGAGAAAGAGCCAGATGGTGATGGAGGTTCTGC TGTCCAACTTTATGCCAAAGAATGTAGCAAGCTCCTCCTAGATGTGCTTAAAAGAGGACCTAGTGAAAAGGATAGCAAAG AAGTGGTAGCGGCTGATATTACCACCCCTGAAAAGGATAGCAAAGAAGTGGAAGGGGCTGATATTACCACCACTGAAAAG GATAGCAAAGAAGTGGTAGCGGATGATATTACCACCACTGCATCTACCAAATCTGTTTTTGATATATCTAAAGGCCAAAG GGCCTTCATTGAAGCAGAAGAGGCTCAGGAACTTTTGAGGCCATTACAGGTTCCTGGAAATTCTTTCACCAAAATATGCT TCAGCAACAGAAGTTTTGGATTAGGAGCCGCGAAAGTTGCCCAACCTATTCTTATTTCCCTCAGGGACCAGTTGAAAGAA GTAGATCTGTCAGATTTTATTGCCGGAAGACCTGAAACTGAAGCACTAGATGTCATGAAGATTTTCTCAGCTGCTCTAGA GGGCAGTGTCCTGAAGTCTTTGAACCTATCTGACAATGCTTTAGGCGAGAAAGGTGTAAGAGCATTTGAAGCTCTCTTGC AATCACAGAACTTCTTGGAGGAGCTTTATCTGATGAATGATGGAATCTCGGAGGAAGCTGCTCAAGCAGTTTGTGAGTTG ATTCCTTCCACAGAGAAGCTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGGGCACTATCTATAGCTGA GATTGTGAAGCGTTCTCCTTCATTGGAGGATTTTCGCTGTTCCTCCACAAGGATAGGCACTGAAGGTGGAGTTGCCTTAG CTGAAGCTTTAGGGAATTGTACCCATCTGCAAAGGATTGATTTGCGAGACAACATGTTAGGTGTAGAAGGCGGGGTTTCT CTGAGCAAAGCTCTTATCAAGCATCCAGAGTTAAGAGAGATATACCTGAGCTACCTGAACTTGGAAAATGATGGTGCAAT TGCTGTACTCGATGCTCTGAAGGAATCAGCTCCTCATCTTGAAGTTCTCGAGATGAGTGGAAATGAAATTTCAGTTGAGG CTGCTCCTGCAATAGCAGCCTTCATAGCAGGAAAACAGTGTCTTGCCAAGTTGAACTTCTCTGAGAATGAACTCAAGGAT GAAGGTGCCATCAAAATAAGTAAGGCACTGGAAGGCCTTGTCCAGTTAAAGGAAATTGATCTGAGTAGCAACCAAATAAC TGGGGCTGGGGCCCGAGAATTGGCTCTGACTGTGGTGCAGAAGGCTGATTTCAAATCTCTGAACATCAATGGAAACTTCA TTTCCAATGAAGGCATTGATGAGTTGACGGATATATTAAAAAATTCTCCTGACGTTCTTGGTCCATTAAATGACAATGAT CCTGATGGAGAAGACAATGATGAAGAATCTGATGAAGAAGACGGTGAGGATGAACTGGAATCCAAAATGAAAAGCCTTTC AGTTGACTGAACTGGCGCATTTGTTATCTCCTTTCATGTTCTGCTGCTGAAATAACTCTTACGACGGTAGCTAGATCATT TTATTCCATGTTGTTTATGTAGGCATCAGTTACAGACAGCAGTTAATCTTGTTTTCAATGTTTCATTTCTCTTCGTAGCA CGAGAACGAGAATGTATTATTTGCAGTTGCAACACTGTAGTCTATAGTCTTATTGTTTTTCAAACATGGTTCTGCTTGTA GAAGTTTTCTTTGGGGTACAATTAGTACTGAGATTTGAAGTTATTCTTTTTTCTGGTCAAATCTTTTGAGTATTTCATAC AGTGGTTTCTCAGCTAATGGATCTTTACTTTTTTCAATTCAT
CDS sequence (LotjaGi5g1v0316600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGAATTCGCAGAACAGGCCATTTTCAATCAAATTATGGCCTCCTAGTCAGAACACTAGGCAGACACTTGTGGA GAGGATGACCAATAATCTGACTACTAAATCTATCTTCACTCAGAAGTATGGAACTTTGGACAAGGAAGAGGCTGAAGAGA ATGCAAAAAAAATCGAAGATGCGGCTTTTGTCACAGCAAACTTACATTATGAGAAAGAGCCAGATGGTGATGGAGGTTCT GCTGTCCAACTTTATGCCAAAGAATGTAGCAAGCTCCTCCTAGATGTGCTTAAAAGAGGACCTAGTGAAAAGGATAGCAA AGAAGTGGTAGCGGCTGATATTACCACCCCTGAAAAGGATAGCAAAGAAGTGGAAGGGGCTGATATTACCACCACTGAAA AGGATAGCAAAGAAGTGGTAGCGGATGATATTACCACCACTGCATCTACCAAATCTGTTTTTGATATATCTAAAGGCCAA AGGGCCTTCATTGAAGCAGAAGAGGCTCAGGAACTTTTGAGGCCATTACAGGTTCCTGGAAATTCTTTCACCAAAATATG CTTCAGCAACAGAAGTTTTGGATTAGGAGCCGCGAAAGTTGCCCAACCTATTCTTATTTCCCTCAGGGACCAGTTGAAAG AAGTAGATCTGTCAGATTTTATTGCCGGAAGACCTGAAACTGAAGCACTAGATGTCATGAAGATTTTCTCAGCTGCTCTA GAGGGCAGTGTCCTGAAGTCTTTGAACCTATCTGACAATGCTTTAGGCGAGAAAGGTGTAAGAGCATTTGAAGCTCTCTT GCAATCACAGAACTTCTTGGAGGAGCTTTATCTGATGAATGATGGAATCTCGGAGGAAGCTGCTCAAGCAGTTTGTGAGT TGATTCCTTCCACAGAGAAGCTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGGGCACTATCTATAGCT GAGATTGTGAAGCGTTCTCCTTCATTGGAGGATTTTCGCTGTTCCTCCACAAGGATAGGCACTGAAGGTGGAGTTGCCTT AGCTGAAGCTTTAGGGAATTGTACCCATCTGCAAAGGATTGATTTGCGAGACAACATGTTAGGTGTAGAAGGCGGGGTTT CTCTGAGCAAAGCTCTTATCAAGCATCCAGAGTTAAGAGAGATATACCTGAGCTACCTGAACTTGGAAAATGATGGTGCA ATTGCTGTACTCGATGCTCTGAAGGAATCAGCTCCTCATCTTGAAGTTCTCGAGATGAGTGGAAATGAAATTTCAGTTGA GGCTGCTCCTGCAATAGCAGCCTTCATAGCAGGAAAACAGTGTCTTGCCAAGTTGAACTTCTCTGAGAATGAACTCAAGG ATGAAGGTGCCATCAAAATAAGTAAGGCACTGGAAGGCCTTGTCCAGTTAAAGGAAATTGATCTGAGTAGCAACCAAATA ACTGGGGCTGGGGCCCGAGAATTGGCTCTGACTGTGGTGCAGAAGGCTGATTTCAAATCTCTGAACATCAATGGAAACTT CATTTCCAATGAAGGCATTGATGAGTTGACGGATATATTAAAAAATTCTCCTGACGTTCTTGGTCCATTAAATGACAATG ATCCTGATGGAGAAGACAATGATGAAGAATCTGATGAAGAAGACGGTGAGGATGAACTGGAATCCAAAATGAAAAGCCTT TCAGTTGACTGA
Protein sequence (LotjaGi5g1v0316600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNSQNRPFSIKLWPPSQNTRQTLVERMTNNLTTKSIFTQKYGTLDKEEAEENAKKIEDAAFVTANLHYEKEPDGDGGS AVQLYAKECSKLLLDVLKRGPSEKDSKEVVAADITTPEKDSKEVEGADITTTEKDSKEVVADDITTTASTKSVFDISKGQ RAFIEAEEAQELLRPLQVPGNSFTKICFSNRSFGLGAAKVAQPILISLRDQLKEVDLSDFIAGRPETEALDVMKIFSAAL EGSVLKSLNLSDNALGEKGVRAFEALLQSQNFLEELYLMNDGISEEAAQAVCELIPSTEKLKVLHFHNNMTGDEGALSIA EIVKRSPSLEDFRCSSTRIGTEGGVALAEALGNCTHLQRIDLRDNMLGVEGGVSLSKALIKHPELREIYLSYLNLENDGA IAVLDALKESAPHLEVLEMSGNEISVEAAPAIAAFIAGKQCLAKLNFSENELKDEGAIKISKALEGLVQLKEIDLSSNQI TGAGARELALTVVQKADFKSLNINGNFISNEGIDELTDILKNSPDVLGPLNDNDPDGEDNDEESDEEDGEDELESKMKSL SVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 563 | 561 | 1.5E-282 | – | |
| PANTHER | 3 | 563 | 561 | 1.5E-282 | – | |
| Pfam | 11 | 105 | 95 | 1.3E-35 | ||
| Gene3D | 11 | 109 | 99 | 4.4E-37 | ||
| Gene3D | 157 | 438 | 282 | 5.9E-60 | ||
| SUPERFAMILY | 163 | 539 | 377 | 3.61E-67 | – | |
| SMART | 242 | 269 | 28 | 0.0062 | – | |
| Pfam | 245 | 263 | 19 | 0.086 | ||
| SMART | 270 | 297 | 28 | 8.4 | – | |
| SMART | 298 | 325 | 28 | 26.0 | – | |
| SMART | 326 | 353 | 28 | 3.3 | – | |
| Pfam | 353 | 376 | 24 | 0.047 | ||
| SMART | 354 | 381 | 28 | 0.21 | – | |
| SMART | 382 | 409 | 28 | 6.4 | – | |
| SMART | 411 | 438 | 28 | 3.0 | – | |
| Pfam | 412 | 429 | 18 | 1.2 | ||
| Gene3D | 439 | 551 | 113 | 2.9E-13 | ||
| SMART | 439 | 466 | 28 | 1.3 | – | |
| Pfam | 440 | 461 | 22 | 0.044 | ||
| SMART | 467 | 494 | 28 | 1.6 | – | |
| Pfam | 470 | 489 | 20 | 0.0046 | ||
| SMART | 495 | 522 | 28 | 18.0 | – | |
| MobiDBLite | 524 | 563 | 40 | - | – | |
| MobiDBLite | 532 | 552 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0316600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…