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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0316600 |
| Transcript ID | LotjaGi5g1v0316600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RAN GTPase-activating protein 2; TAIR: AT5G19320.1 RAN GTPase activating protein 2; Swiss-Prot: sp|Q9M651|RAGP2_ARATH RAN GTPase-activating protein 2; TrEMBL-Plants: tr|I1NGB7|I1NGB7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0316600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:63435674..63437365) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGCTGAATTCGCAGAACAGGCCATTTTCAATCAAATTATGGCCTCCTAGTCAGAACACTAGGCAGACACTTGTGGA GAGGATGACCAATAATCTGACTACTAAATCTATCTTCACTCAGAAGTATGGAACTTTGGACAAGGAAGAGGCTGAAGAGA ATGCAAAAAAAATCGAAGATGCGGCTTTTGTCACAGCAAACTTACATTATGAGAAAGAGCCAGATGGTGATGGAGGTTCT GCTGTCCAACTTTATGCCAAAGAATGTAGCAAGCTCCTCCTAGATGTGCTTAAAAGAGGACCTAGTGAAAAGGATAGCAA AGAAGTGGTAGCGGCTGATATTACCACCCCTGAAAAGGATAGCAAAGAAGTGGAAGGGGCTGATATTACCACCACTGAAA AGGATAGCAAAGAAGTGGTAGCGGATGATATTACCACCACTGCATCTACCAAATCTGTTTTTGATATATCTAAAGGCCAA AGGGCCTTCATTGAAGCAGAAGAGGCTCAGGAACTTTTGAGGCCATTACAGGTTCCTGGAAATTCTTTCACCAAAATATG CTTCAGCAACAGAAGTTTTGGATTAGGAGCCGCGAAAGTTGCCCAACCTATTCTTATTTCCCTCAGGGACCAGTTGAAAG AAGTAGATCTGTCAGATTTTATTGCCGGAAGACCTGAAACTGAAGCACTAGATGTCATGAAGATTTTCTCAGCTGCTCTA GAGGGCAGTGTCCTGAAGTCTTTGAACCTATCTGACAATGCTTTAGGCGAGAAAGGTGTAAGAGCATTTGAAGCTCTCTT GCAATCACAGAACTTCTTGGAGGAGCTTTATCTGATGAATGATGGAATCTCGGAGGAAGCTGCTCAAGCAGTTTGTGAGT TGATTCCTTCCACAGAGAAGCTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGGGCACTATCTATAGCT GAGATTGTGAAGCGTTCTCCTTCATTGGAGGATTTTCGCTGTTCCTCCACAAGGATAGGCACTGAAGGTGGAGTTGCCTT AGCTGAAGCTTTAGGGAATTGTACCCATCTGCAAAGGATTGATTTGCGAGACAACATGTTAGGTGTAGAAGGCGGGGTTT CTCTGAGCAAAGCTCTTATCAAGCATCCAGAGTTAAGAGAGATATACCTGAGCTACCTGAACTTGGAAAATGATGGTGCA ATTGCTGTACTCGATGCTCTGAAGGAATCAGCTCCTCATCTTGAAGTTCTCGAGATGAGTGGAAATGAAATTTCAGTTGA GGCTGCTCCTGCAATAGCAGCCTTCATAGCAGGAAAACAGTGTCTTGCCAAGTTGAACTTCTCTGAGAATGAACTCAAGG ATGAAGGTGCCATCAAAATAAGTAAGGCACTGGAAGGCCTTGTCCAGTTAAAGGAAATTGATCTGAGTAGCAACCAAATA ACTGGGGCTGGGGCCCGAGAATTGGCTCTGACTGTGGTGCAGAAGGCTGATTTCAAATCTCTGAACATCAATGGAAACTT CATTTCCAATGAAGGCATTGATGAGTTGACGGATATATTAAAAAATTCTCCTGACGTTCTTGGTCCATTAAATGACAATG ATCCTGATGGAGAAGACAATGATGAAGAATCTGATGAAGAAGACGGTGAGGATGAACTGGAATCCAAAATGAAAAGCCTT TCAGTTGACTGA
CDS sequence (LotjaGi5g1v0316600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTGAATTCGCAGAACAGGCCATTTTCAATCAAATTATGGCCTCCTAGTCAGAACACTAGGCAGACACTTGTGGA GAGGATGACCAATAATCTGACTACTAAATCTATCTTCACTCAGAAGTATGGAACTTTGGACAAGGAAGAGGCTGAAGAGA ATGCAAAAAAAATCGAAGATGCGGCTTTTGTCACAGCAAACTTACATTATGAGAAAGAGCCAGATGGTGATGGAGGTTCT GCTGTCCAACTTTATGCCAAAGAATGTAGCAAGCTCCTCCTAGATGTGCTTAAAAGAGGACCTAGTGAAAAGGATAGCAA AGAAGTGGTAGCGGATATTACCACCACTGCATCTACCAAATCTGTTTTTGATATATCTAAAGGCCAAAGGGCCTTCATTG AAGCAGAAGAGGCTCAGGAACTTTTGAGGCCATTACAGGTTCCTGGAAATTCTTTCACCAAAATATGCTTCAGCAACAGA AGTTTTGGATTAGGAGCCGCGAAAGTTGCCCAACCTATTCTTATTTCCCTCAGGGACCAGTTGAAAGAAGTAGATCTGTC AGATTTTATTGCCGGAAGACCTGAAACTGAAGCACTAGATGTCATGAAGATTTTCTCAGCTGCTCTAGAGGGCAGTGTCC TGAAGTCTTTGAACCTATCTGACAATGCTTTAGGCGAGAAAGGTGTAAGAGCATTTGAAGCTCTCTTGCAATCACAGAAC TTCTTGGAGGAGCTTTATCTGATGAATGATGGAATCTCGGAGGAAGCTGCTCAAGCAGTTTGTGAGTTGATTCCTTCCAC AGAGAAGCTCAAAGTTCTTCATTTTCATAATAATATGACTGGAGATGAAGGGGCACTATCTATAGCTGAGATTGTGAAGC GTTCTCCTTCATTGGAGGATTTTCGCTGTTCCTCCACAAGGATAGGCACTGAAGGTGGAGTTGCCTTAGCTGAAGCTTTA GGGAATTGTACCCATCTGCAAAGGATTGATTTGCGAGACAACATGTTAGGTGTAGAAGGCGGGGTTTCTCTGAGCAAAGC TCTTATCAAGCATCCAGAGTTAAGAGAGATATACCTGAGCTACCTGAACTTGGAAAATGATGGTGCAATTGCTGTACTCG ATGCTCTGAAGGAATCAGCTCCTCATCTTGAAGTTCTCGAGATGAGTGGAAATGAAATTTCAGTTGAGGCTGCTCCTGCA ATAGCAGCCTTCATAGCAGGAAAACAGTGTCTTGCCAAGTTGAACTTCTCTGAGAATGAACTCAAGGATGAAGGTGCCAT CAAAATAAGTAAGGCACTGGAAGGCCTTGTCCAGTTAAAGGAAATTGATCTGAGTAGCAACCAAATAACTGGGGCTGGGG CCCGAGAATTGGCTCTGACTGTGGTGCAGAAGGCTGATTTCAAATCTCTGAACATCAATGGAAACTTCATTTCCAATGAA GGCATTGATGAGTTGACGGATATATTAAAAAATTCTCCTGACGTTCTTGGTCCATTAAATGACAATGATCCTGATGGAGA AGACAATGATGAAGAATCTGATGAAGAAGACGGTGAGGATGAACTGGAATCCAAAATGAAAAGCCTTTCAGTTGACTGA
Protein sequence (LotjaGi5g1v0316600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELNSQNRPFSIKLWPPSQNTRQTLVERMTNNLTTKSIFTQKYGTLDKEEAEENAKKIEDAAFVTANLHYEKEPDGDGGS AVQLYAKECSKLLLDVLKRGPSEKDSKEVVADITTTASTKSVFDISKGQRAFIEAEEAQELLRPLQVPGNSFTKICFSNR SFGLGAAKVAQPILISLRDQLKEVDLSDFIAGRPETEALDVMKIFSAALEGSVLKSLNLSDNALGEKGVRAFEALLQSQN FLEELYLMNDGISEEAAQAVCELIPSTEKLKVLHFHNNMTGDEGALSIAEIVKRSPSLEDFRCSSTRIGTEGGVALAEAL GNCTHLQRIDLRDNMLGVEGGVSLSKALIKHPELREIYLSYLNLENDGAIAVLDALKESAPHLEVLEMSGNEISVEAAPA IAAFIAGKQCLAKLNFSENELKDEGAIKISKALEGLVQLKEIDLSSNQITGAGARELALTVVQKADFKSLNINGNFISNE GIDELTDILKNSPDVLGPLNDNDPDGEDNDEESDEEDGEDELESKMKSLSVD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 532 | 530 | 5.3E-288 | – | |
| PANTHER | 3 | 532 | 530 | 5.3E-288 | – | |
| Gene3D | 11 | 110 | 100 | 3.7E-37 | ||
| Pfam | 11 | 105 | 95 | 1.2E-35 | ||
| SUPERFAMILY | 123 | 508 | 386 | 2.2E-67 | – | |
| Gene3D | 126 | 407 | 282 | 5.1E-60 | ||
| SMART | 211 | 238 | 28 | 0.0062 | – | |
| Pfam | 214 | 232 | 19 | 0.081 | ||
| SMART | 239 | 266 | 28 | 8.4 | – | |
| SMART | 267 | 294 | 28 | 26.0 | – | |
| SMART | 295 | 322 | 28 | 3.3 | – | |
| Pfam | 322 | 345 | 24 | 0.044 | ||
| SMART | 323 | 350 | 28 | 0.21 | – | |
| SMART | 351 | 378 | 28 | 6.4 | – | |
| SMART | 380 | 407 | 28 | 3.0 | – | |
| Pfam | 381 | 398 | 18 | 1.1 | ||
| Gene3D | 408 | 520 | 113 | 1.8E-13 | ||
| SMART | 408 | 435 | 28 | 1.3 | – | |
| Pfam | 409 | 430 | 22 | 0.041 | ||
| SMART | 436 | 463 | 28 | 1.6 | – | |
| Pfam | 439 | 458 | 20 | 0.0043 | ||
| SMART | 464 | 491 | 28 | 18.0 | – | |
| MobiDBLite | 493 | 532 | 40 | - | – | |
| MobiDBLite | 501 | 521 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0316600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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