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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0321900 |
| Transcript ID | LotjaGi5g1v0321900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Octanoyltransferase; TAIR: AT1G04640.1 lipoyltransferase 2; Swiss-Prot: sp|Q9SXP7|LIPB_ARATH Octanoyltransferase; TrEMBL-Plants: tr|A0A072VQE6|A0A072VQE6_MEDTR Biotin/lipoate A/B protein ligase family protein; Found in the gene: LotjaGi5g1v0321900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:64068246..64068953) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGTTGTGCGAACTCTTGAGGTCTGGAAACTGGGAGTTGTCAACTATATGAAAGCATTGAAACTGCAGGAAAAGCT GGTTGTGGATAGAAAATGTCATAGGAGATGTGATACTCTTGTGTCTCTGCAACATCCACCTACATACACTGTTGGCAAAA GACAAACGGTTCATAATTTATTAATCCCTCACTCGGACTTGGAACGGATTGGAGCTGAACTTTACCACACACAACGGGGG GGAGACATTACATTTCATGGTCCGCACCAAGCCGTTTTATATCCTATTATATCACTTCGCGACTTGGGACTTGGTGCTCG AAGTTTTGTGGAAAAAATTGAGTTAACTATGATTGAATTGGCGGGTCTATATGGTGTGAAAGCTTGTCCTGGACAAGCTG GTGAGACAGGGGTATGGGTTGGTGAAAGGAAGATAGGTGCAGTTGGTGTTCGGATATCTAATGGAATCACTTCTCATGGG ATGGCATTTAACATTGATCCTGATTTGAGCTATTTTAGCCACATTGTTCCCTGTGGAATCACAGATAAAGGAGTGACATC TTTGAGAAGGGAGACAGATTGTGATCTTCCTGCTGAAGATATAATACAGGAGCAATTGATCTCATGTTTTGCAAGAATCT TTGGCTATAGCAACCTGATTTGGAAGGATGAGGCTTCAATATTTTCTGATAAAAATGAAACTGAATGA
CDS sequence (LotjaGi5g1v0321900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTTGTGCGAACTCTTGAGGTCTGGAAACTGGGAGTTGTCAACTATATGAAAGCATTGAAACTGCAGGAAAAGCT GGTTGTGGATAGAAAATGTCATAGGAGATGTGATACTCTTGTGTCTCTGCAACATCCACCTACATACACTGTTGGCAAAA GACAAACGGTTCATAATTTATTAATCCCTCACTCGGACTTGGAACGGATTGGAGCTGAACTTTACCACACACAACGGGGG GGAGACATTACATTTCATGGTCCGCACCAAGCCGTTTTATATCCTATTATATCACTTCGCGACTTGGGACTTGGTGCTCG AAGTTTTGTGGAAAAAATTGAGTTAACTATGATTGAATTGGCGGGTCTATATGGTGTGAAAGCTTGTCCTGGACAAGCTG GTGAGACAGGGGTATGGGTTGGTGAAAGGAAGATAGGTGCAGTTGGTGTTCGGATATCTAATGGAATCACTTCTCATGGG ATGGCATTTAACATTGATCCTGATTTGAGCTATTTTAGCCACATTGTTCCCTGTGGAATCACAGATAAAGGAGTGACATC TTTGAGAAGGGAGACAGATTGTGATCTTCCTGCTGAAGATATAATACAGGAGCAATTGATCTCATGTTTTGCAAGAATCT TTGGCTATAGCAACCTGATTTGGAAGGATGAGGCTTCAATATTTTCTGATAAAAATGAAACTGAATGA
Protein sequence (LotjaGi5g1v0321900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVVRTLEVWKLGVVNYMKALKLQEKLVVDRKCHRRCDTLVSLQHPPTYTVGKRQTVHNLLIPHSDLERIGAELYHTQRG GDITFHGPHQAVLYPIISLRDLGLGARSFVEKIELTMIELAGLYGVKACPGQAGETGVWVGERKIGAVGVRISNGITSHG MAFNIDPDLSYFSHIVPCGITDKGVTSLRRETDCDLPAEDIIQEQLISCFARIFGYSNLIWKDEASIFSDKNETE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 2 | 223 | 222 | 1.6E-61 | ||
| PANTHER | 3 | 229 | 227 | 2.4E-88 | – | |
| PANTHER | 3 | 229 | 227 | 2.4E-88 | – | |
| Gene3D | 5 | 215 | 211 | 2.2E-69 | – | |
| SUPERFAMILY | 6 | 216 | 211 | 4.31E-54 | – | |
| Hamap | 6 | 217 | 212 | 29.711 | ||
| CDD | 8 | 214 | 207 | 5.5221E-89 | ||
| ProSiteProfiles | 34 | 218 | 185 | 58.94 | ||
| TIGRFAM | 34 | 215 | 182 | 6.5E-44 | ||
| Pfam | 53 | 168 | 116 | 4.2E-8 | ||
| ProSitePatterns | 79 | 94 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Cellular protein modification process | The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). | ||
| Biological process | Protein lipoylation | The lipoylation of peptidyl-lysine to form peptidyl-N6-lipoyl-L-lysine. | ||
| Molecular function | Lipoyl(octanoyl) transferase activity | Catalysis of the reaction: octanoyl-[acyl-carrier protein] + protein = protein N6-(octanoyl)lysine + acyl-carrier protein. |
Expression pattern of LotjaGi5g1v0321900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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